Rh6AG260600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010105
Physical Location & Seq
Forward (+)
45253522 .. 45254200
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG260600.1

Sequence Viewer

Length: 570 bp
ATGAATGAATCTGACGAGTACCCAAAAGAGCATTACGGCGGCCAAACATCCATGTCGTCCTCATCAACCACAAGCGTCCACGTCACCGCCCTGGACGGTCTGGTCAACGTCAACTCCCTCTTCACCATCGCGGTCTTCGTGGGCCTGTCCCTGACCGTACCGGGACAAAAGAGCCTAGAGAACCGGACAGCCTGCGACGCCGGCAATGACGTGGCGAAGAAGCTTCTGGTGTTCGAGGTTGTCTCCTTCAGCTTCTTCCTCTTCTCGTCCCTGGTCGCCCAGGGCCTCAAGCTCGCCATCAACTTGCTTAACAGCAAGGAAGTCGACGAGGCCTTCCGGGCCCACATCAACATCAAGGTGCTGAGGTTCGGGATGTTGGGGTCGGCCTTCGGATCCGTCATGGGTTGCGTCTTTCTCATGCTGTCGATGGTCAATGTGATCCAGATCCGGTTGGGGATGTTGTCGTGTGGGAGCAAATCTGCTGTCCACTCTGTTGCGGCTCTTATCGTTTTGGTCTCTACGGCGCTCTTGGTCTATCTCTCTACTGCTATCTATGCTTTTCTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.22

Weight (kDa)

6.95

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 131
AciI CCGC 4 cut(s) 39, 87, 131, 497
AclWI GGATC 4 cut(s) 387, 400, 433, 439
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 20, 159
AjiI CACGTC 2 cut(s) 82, 211
AjnI CCWGG 3 cut(s) 90, 270, 279
AluBI AGCT 3 cut(s) 223, 252, 292
AluI AGCT 3 cut(s) 223, 252, 292
Alw26I GTCTC 2 cut(s) 247, 520
AlwI GGATC 4 cut(s) 387, 400, 433, 439
AoxI GGCC 6 cut(s) 40, 142, 283, 330, 339, 384
ApaI GGGCCC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 4 cut(s) 142, 283, 339, 340
AsuC2I CCSGG 2 cut(s) 162, 338
AsuHPI GGTGA 2 cut(s) 76, 115
BaeGI GKGCMC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 134, 305, 421
BceAI ACGGC 2 cut(s) 52, 537
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 3 cut(s) 92, 272, 281
BcnI CCSGG 2 cut(s) 162, 338
BcoDI GTCTC 2 cut(s) 247, 520
BfaI CTAG 2 cut(s) 176, 568
BfoI RGCGCY 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 2 cut(s) 40, 498
BlsI GCNGC 2 cut(s) 41, 499
Bme1390I CCNGG 5 cut(s) 92, 162, 272, 281, 338
BmgBI CACGTC 2 cut(s) 82, 211
BmgT120I GGNCC 4 cut(s) 142, 283, 339, 340
BmiI GGNNCC 2 cut(s) 341, 394
BmrFI CCNGG 5 cut(s) 92, 162, 272, 281, 338
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 162, 338
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 4 cut(s) 90, 270, 279, 280
BsaWI WCCGGW 2 cut(s) 183, 447
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 3 cut(s) 92, 272, 281
BseDI CCNNGG 4 cut(s) 90, 270, 279, 280
BseGI GGATG 3 cut(s) 47, 378, 462
BseJI GATNNNNATC 1 cut(s) 443
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 6 cut(s) 42, 144, 285, 332, 341, 386
BsiSI CCGG 5 cut(s) 161, 184, 201, 337, 448
BslFI GGGAC 3 cut(s) 133, 177, 253
BsmAI GTCTC 2 cut(s) 247, 520
BsmFI GGGAC 3 cut(s) 133, 177, 253
BsnI GGCC 6 cut(s) 42, 144, 285, 332, 341, 386
Bso31I GGTCTC 1 cut(s) 520
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 3 cut(s) 392, 438, 444
BspACI CCGC 4 cut(s) 39, 87, 131, 497
BspANI GGCC 6 cut(s) 42, 144, 285, 332, 341, 386
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 341, 394
BspPI GGATC 4 cut(s) 387, 400, 433, 439
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 90, 270, 279, 280
BssMI GATC 3 cut(s) 392, 438, 444
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 92, 272, 281
Bst4CI ACNGT 2 cut(s) 98, 157
Bst6I CTCTTC 2 cut(s) 125, 266
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 193, 202, 294
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 47, 378, 462
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 3 cut(s) 395, 441, 447
BstMAI GTCTC 2 cut(s) 247, 520
BstMBI GATC 3 cut(s) 392, 438, 444
BstMWI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
BstNI CCWGG 3 cut(s) 92, 272, 281
BstSCI CCNGG 5 cut(s) 90, 160, 270, 279, 336
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 392, 444
BstYI RGATCY 2 cut(s) 392, 444
BsuRI GGCC 6 cut(s) 42, 144, 285, 332, 341, 386
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 2 cut(s) 82, 211
BtsCI GGATG 3 cut(s) 47, 378, 462
Cac8I GCNNGC 3 cut(s) 193, 202, 294
CfoI GCGC 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 142, 283, 339, 340
CseI GACGC 3 cut(s) 64, 206, 397
Csp6I GTAC 2 cut(s) 19, 158
CviAII CATG 3 cut(s) 52, 400, 418
CviQI GTAC 2 cut(s) 19, 158
DdeI CTNAG 1 cut(s) 362
DpnI GATC 3 cut(s) 394, 440, 446
DpnII GATC 3 cut(s) 392, 438, 444
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 125, 266
EarI CTCTTC 2 cut(s) 125, 266
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 90, 270, 279
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 3 cut(s) 55, 403, 421
FaiI YATR 4 cut(s) 53, 401, 419, 555
FaqI GGGAC 3 cut(s) 133, 177, 253
FatI CATG 3 cut(s) 51, 399, 417
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 40, 498
FokI GGATG 3 cut(s) 34, 385, 469
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 40, 498
FspBI CTAG 2 cut(s) 176, 568
GlaI GCGC 1 cut(s) 525
GluI GCNGC 2 cut(s) 40, 498
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 6 cut(s) 42, 144, 285, 332, 341, 386
HapII CCGG 5 cut(s) 161, 184, 201, 337, 448
HgaI GACGC 3 cut(s) 64, 206, 397
HhaI GCGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 3 cut(s) 55, 403, 421
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 3 cut(s) 106, 112, 325
HindII GTYRAC 3 cut(s) 106, 112, 325
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 8
HpaII CCGG 5 cut(s) 161, 184, 201, 337, 448
HphI GGTGA 2 cut(s) 76, 115
Hpy166II GTNNAC 5 cut(s) 79, 106, 112, 325, 487
Hpy188I TCNGA 2 cut(s) 13, 392
Hpy188III TCNNGA 2 cut(s) 370, 442
Hpy8I GTNNAC 5 cut(s) 79, 106, 112, 325, 487
Hpy99I CGWCG 2 cut(s) 200, 329
HpyAV CCTTC 3 cut(s) 256, 343, 397
HpyCH4III ACNGT 2 cut(s) 98, 157
HpyCH4IV ACGT 3 cut(s) 81, 108, 210
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 3 cut(s) 81, 108, 210
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 3 cut(s) 55, 403, 421
HspAI GCGC 1 cut(s) 524
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 392, 438, 444
LmnI GCTCC 1 cut(s) 471
MaeI CTAG 2 cut(s) 176, 568
MaeII ACGT 3 cut(s) 81, 108, 210
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 394, 440, 446
MboI GATC 3 cut(s) 392, 438, 444
MboII GAAGA 6 cut(s) 112, 127, 229, 247, 253, 554
MflI RGATCY 2 cut(s) 392, 444
MhlI GDGCHC 1 cut(s) 343
MnlI CCTC 7 cut(s) 70, 128, 229, 269, 296, 322, 357
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 356
MspI CCGG 5 cut(s) 161, 184, 201, 337, 448
MspR9I CCNGG 5 cut(s) 92, 162, 272, 281, 338
MvaI CCWGG 3 cut(s) 92, 272, 281
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 197, 201, 338, 554
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 162, 338
NdeII GATC 3 cut(s) 392, 438, 444
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 55, 403, 421
NlaIV GGNNCC 2 cut(s) 341, 394
NmuCI GTSAC 1 cut(s) 82
PasI CCCWGGG 1 cut(s) 280
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 41, 499
Psp6I CCWGG 3 cut(s) 90, 270, 279
PspGI CCWGG 3 cut(s) 90, 270, 279
PspN4I GGNNCC 2 cut(s) 341, 394
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 4 cut(s) 142, 283, 339, 340
PsuI RGATCY 2 cut(s) 392, 444
RsaI GTAC 2 cut(s) 20, 159
RsaNI GTAC 2 cut(s) 19, 158
RseI CAYNNNNRTG 1 cut(s) 356
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 40, 498
Sau3AI GATC 3 cut(s) 392, 438, 444
Sau96I GGNCC 4 cut(s) 142, 283, 339, 340
ScrFI CCNGG 5 cut(s) 92, 162, 272, 281, 338
SduI GDGCHC 1 cut(s) 343
SetI ASST 9 cut(s) 84, 111, 213, 225, 240, 254, 294, 360, 368
SfiI GGCCNNNNNGGCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 4 cut(s) 39, 87, 131, 497
SspMI CTAG 2 cut(s) 176, 568
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 5 cut(s) 90, 160, 270, 279, 336
TaaI ACNGT 2 cut(s) 98, 157
TaiI ACGT 3 cut(s) 84, 111, 213
TaqI TCGA 3 cut(s) 234, 324, 425
TauI GCSGC 2 cut(s) 42, 500
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 17, 21
TspGWI ACGGA 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 176, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.