Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005697.1

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Reverse (-)

38228 .. 39037

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005697.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggatgaatctgacgagtacccaaaagagcattacggcggccaaacatccatgtcgtcctcatcaaccacaagcgtccacgtcaccgccctggacggtctggtcaacgtcaactccctcttcaccatcgcggtcttcgtgggcctgtccctgaccgtaccgggacaaaagagcctcgagaaccggacagcctgcgacgccggcaatgacgtggcgaagaagcttctggtgttcgaggttgtctccttcagcttcttcctcttctcgtccctggtcgcccagggcctcaagctcgccatcaacttgcttaacagcaaggaagtcgacgaggccttccgggcccacatcaacatcaaggtgctgaggttcgggatgttggggtcggcctgggatggtgtgctccaacatatttggaacccgaatttgtgccctttggattctccggcaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.25

Weight (kDa)

5.21

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	39, 87, 131
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	20, 159
AjiI	CACGTC	2 cut(s)	82, 211
AjnI	CCWGG	4 cut(s)	90, 270, 279, 386
AluBI	AGCT	3 cut(s)	223, 252, 292
AluI	AGCT	3 cut(s)	223, 252, 292
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	6 cut(s)	40, 142, 283, 330, 339, 384
ApaI	GGGCCC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	421
AspS9I	GGNCC	4 cut(s)	142, 283, 339, 340
AsuC2I	CCSGG	2 cut(s)	162, 338
AsuHPI	GGTGA	2 cut(s)	76, 115
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	2 cut(s)	343, 431
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	134, 305, 386
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	4 cut(s)	92, 272, 281, 388
BcnI	CCSGG	2 cut(s)	162, 338
BcoDI	GTCTC	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	6 cut(s)	92, 162, 272, 281, 338, 388
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	82, 211
BmgT120I	GGNCC	4 cut(s)	142, 283, 339, 340
BmiI	GGNNCC	3 cut(s)	341, 416, 447
BmrFI	CCNGG	6 cut(s)	92, 162, 272, 281, 338, 388
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	162, 338
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	5 cut(s)	90, 270, 279, 280, 387
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	4 cut(s)	92, 272, 281, 388
BseDI	CCNNGG	5 cut(s)	90, 270, 279, 280, 387
BseGI	GGATG	4 cut(s)	10, 47, 378, 397
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	353
BseSI	GKGCMC	2 cut(s)	343, 431
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	6 cut(s)	42, 144, 285, 332, 341, 386
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	161, 184, 201, 337, 443
BslFI	GGGAC	3 cut(s)	133, 177, 253
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	3 cut(s)	133, 177, 253
BsnI	GGCC	6 cut(s)	42, 144, 285, 332, 341, 386
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	339
Bsp1286I	GDGCHC	3 cut(s)	343, 402, 431
BspACI	CCGC	3 cut(s)	39, 87, 131
BspANI	GGCC	6 cut(s)	42, 144, 285, 332, 341, 386
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	341, 416, 447
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	90, 270, 279, 280, 387
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	4 cut(s)	92, 272, 281, 388
Bst4CI	ACNGT	2 cut(s)	98, 157
Bst6I	CTCTTC	2 cut(s)	125, 266
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	193, 202, 294
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	4 cut(s)	10, 47, 378, 397
BstFNI	CGCG	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 201, 338
BstNI	CCWGG	4 cut(s)	92, 272, 281, 388
BstSCI	CCNGG	6 cut(s)	90, 160, 270, 279, 336, 386
BstSLI	GKGCMC	2 cut(s)	343, 431
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	42, 144, 285, 332, 341, 386
BtgZI	GCGATG	1 cut(s)	112
BtrI	CACGTC	2 cut(s)	82, 211
BtsCI	GGATG	4 cut(s)	10, 47, 378, 397
Cac8I	GCNNGC	3 cut(s)	193, 202, 294
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	142, 283, 339, 340
CseI	GACGC	2 cut(s)	64, 206
Csp6I	GTAC	2 cut(s)	19, 158
CviAII	CATG	1 cut(s)	52
CviQI	GTAC	2 cut(s)	19, 158
DdeI	CTNAG	1 cut(s)	362
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	125, 266
EarI	CTCTTC	2 cut(s)	125, 266
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	4 cut(s)	90, 270, 279, 386
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	1 cut(s)	55
FaiI	YATR	2 cut(s)	53, 408
FaqI	GGGAC	3 cut(s)	133, 177, 253
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	4 cut(s)	17, 34, 385, 404
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	6 cut(s)	42, 144, 285, 332, 341, 386
HapII	CCGG	5 cut(s)	161, 184, 201, 337, 443
HgaI	GACGC	2 cut(s)	64, 206
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	3 cut(s)	106, 112, 325
HindII	GTYRAC	3 cut(s)	106, 112, 325
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	8, 437
HpaII	CCGG	5 cut(s)	161, 184, 201, 337, 443
HphI	GGTGA	2 cut(s)	76, 115
Hpy166II	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	178, 370
Hpy8I	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy99I	CGWCG	2 cut(s)	200, 329
HpyAV	CCTTC	2 cut(s)	256, 343
HpyCH4III	ACNGT	2 cut(s)	98, 157
HpyCH4IV	ACGT	3 cut(s)	81, 108, 210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 201, 338
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	3 cut(s)	81, 108, 210
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	405
MaeII	ACGT	3 cut(s)	81, 108, 210
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	5 cut(s)	112, 127, 229, 247, 253
MhlI	GDGCHC	3 cut(s)	343, 402, 431
MluCI	AATT	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	70, 128, 185, 229, 269, 296, 322, 357
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	2 cut(s)	309, 451
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	5 cut(s)	161, 184, 201, 337, 443
MspR9I	CCNGG	6 cut(s)	92, 162, 272, 281, 338, 388
MvaI	CCWGG	4 cut(s)	92, 272, 281, 388
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	197, 201, 338
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	2 cut(s)	162, 338
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	3 cut(s)	341, 416, 447
NmuCI	GTSAC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	8, 437
PkrI	GCNGC	1 cut(s)	41
Psp6I	CCWGG	4 cut(s)	90, 270, 279, 386
PspGI	CCWGG	4 cut(s)	90, 270, 279, 386
PspN4I	GGNNCC	3 cut(s)	341, 416, 447
PspOMI	GGGCCC	1 cut(s)	339
PspPI	GGNCC	4 cut(s)	142, 283, 339, 340
RsaI	GTAC	2 cut(s)	20, 159
RsaNI	GTAC	2 cut(s)	19, 158
RseI	CAYNNNNRTG	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	309, 451
SatI	GCNGC	1 cut(s)	40
Sau96I	GGNCC	4 cut(s)	142, 283, 339, 340
ScrFI	CCNGG	6 cut(s)	92, 162, 272, 281, 338, 388
SduI	GDGCHC	3 cut(s)	343, 402, 431
SfiI	GGCCNNNNNGGCC	1 cut(s)	338
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	176, 287
SmoI	CTYRAG	2 cut(s)	176, 287
Sse9I	AATT	1 cut(s)	421
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	3 cut(s)	39, 87, 131
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	6 cut(s)	90, 160, 270, 279, 336, 386
TaaI	ACNGT	2 cut(s)	98, 157
TaiI	ACGT	3 cut(s)	84, 111, 213
TaqI	TCGA	3 cut(s)	177, 234, 324
TasI	AATT	1 cut(s)	421
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	8, 437
Tru1I	TTAA	2 cut(s)	309, 451
Tru9I	TTAA	2 cut(s)	309, 451
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	21
XapI	RAATTY	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.