Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Forward (+)

18460848 .. 18462216

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAGAATCTGATGGCTACCCAAAAGAGTGTTACACCCAAGACGGCCGGAGAGTGATGTCATCTTCATCCACCACAAGCGTCCACGTCACGGCTCTAGACGGCCTGGTCAACGTCAACTCACTATTCACCATCGCAGTCTTCGTGGGTCTGTCTCTGACAACACCAGGACAGAGAAGCCTCGAGGGCAAGACAGCCTGCGACGCCGGAACCGGCGTAGCCAAGAAGCTCCTGGTCTTTGAGGTTGTCTCCTTCAGCTTCTTCCTCTTCTCTTCTCTGGTGGCGCAGGGCCTCAAGCTGGCAATCAACTTGCTCAACAGCAAGGATGTCGACGAGGCCTTCCGGGCCCACATCAATCTCAAAGTCTTGAGATTTGGGATGATGGGTTCGGCCTTCGGGTCGGTGATGGGCTGTGTGTTTTTGGTGCTGTCAATGGTGGATGTGATTCAGATCAGGTTGGGGATGTTATCTTGTGGAAGCAAATCTGCTGTGCATTCTGTTGCGGCTCTTGTCGTTTTGGTTTCCACGGCTCTTTTGGTCTATATTTCGACTGCTGTTTATGCTTTTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.33

Weight (kDa)

7.7

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AbsI	CCTCGAGG	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	91, 298
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	3 cut(s)	105, 166, 231
AloI	GAACNNNNNNTCC	2 cut(s)	370, 402
AluBI	AGCT	3 cut(s)	229, 258, 298
AluI	AGCT	3 cut(s)	229, 258, 298
Alw26I	GTCTC	2 cut(s)	159, 253
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	6 cut(s)	46, 103, 289, 336, 345, 390
ApaI	GGGCCC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	289, 345, 346
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	121, 415
AvaI	CYCGRG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	133
BccI	CCATC	4 cut(s)	8, 140, 376, 400
BceAI	ACGGC	4 cut(s)	61, 108, 118, 543
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	3 cut(s)	107, 168, 233
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	159, 253
BfaI	CTAG	1 cut(s)	98
BglI	GCCNNNNNGGC	2 cut(s)	186, 344
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	4 cut(s)	107, 168, 233, 344
BmeT110I	CYCGRG	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	289, 345, 346
BmiI	GGNNCC	2 cut(s)	211, 347
BmrFI	CCNGG	4 cut(s)	107, 168, 233, 344
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpuEI	CTTGAG	2 cut(s)	278, 388
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 298
Bse118I	RCCGGY	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	3 cut(s)	107, 168, 233
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	5 cut(s)	68, 331, 384, 445, 468
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	91, 298
BseSI	GKGCMC	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	6 cut(s)	48, 105, 291, 338, 347, 392
BsiEI	CGRYCG	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	49, 207, 213, 343
BslI	CCNNNNNNNGG	2 cut(s)	91, 298
BsmAI	GTCTC	2 cut(s)	159, 253
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	6 cut(s)	48, 105, 291, 338, 347, 392
BsoBI	CYCGRG	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	450
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	6 cut(s)	48, 105, 291, 338, 347, 392
BspLI	GGNNCC	2 cut(s)	211, 347
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	1 cut(s)	450
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	107, 168, 233
Bst6I	CTCTTC	2 cut(s)	272, 277
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	199, 300
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	5 cut(s)	68, 331, 384, 445, 468
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	2 cut(s)	159, 253
BstMBI	GATC	1 cut(s)	450
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 203, 344, 560
BstNI	CCWGG	3 cut(s)	107, 168, 233
BstSCI	CCNGG	4 cut(s)	105, 166, 231, 342
BstSLI	GKGCMC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	48, 105, 291, 338, 347, 392
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	5 cut(s)	68, 331, 384, 445, 468
Cac8I	GCNNGC	2 cut(s)	199, 300
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	289, 345, 346
CseI	GACGC	2 cut(s)	70, 212
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	272, 277
EarI	CTCTTC	2 cut(s)	272, 277
EclXI	CGGCCG	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	3 cut(s)	105, 166, 231
EcoT38I	GRGCYC	1 cut(s)	349
FaiI	YATR	2 cut(s)	543, 561
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	5 cut(s)	55, 338, 391, 452, 475
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	6 cut(s)	48, 105, 291, 338, 347, 392
HapII	CCGG	4 cut(s)	49, 207, 213, 343
HgaI	GACGC	2 cut(s)	70, 212
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	3 cut(s)	112, 118, 331
HindII	GTYRAC	3 cut(s)	112, 118, 331
HinfI	GANTC	2 cut(s)	8, 445
HpaII	CCGG	4 cut(s)	49, 207, 213, 343
HphI	GGTGA	2 cut(s)	121, 415
Hpy166II	GTNNAC	4 cut(s)	85, 112, 118, 331
Hpy188I	TCNGA	3 cut(s)	13, 159, 450
Hpy188III	TCNNGA	2 cut(s)	98, 367
Hpy8I	GTNNAC	4 cut(s)	85, 112, 118, 331
Hpy99I	CGWCG	2 cut(s)	206, 335
HpyAV	CCTTC	3 cut(s)	262, 349, 403
HpyCH4IV	ACGT	2 cut(s)	87, 114
HpyCH4V	TGCA	1 cut(s)	493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 203, 344, 560
HpySE526I	ACGT	2 cut(s)	87, 114
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	87, 114
MaeIII	GTNAC	2 cut(s)	32, 88
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	7 cut(s)	17, 57, 133, 253, 259, 264, 560
MhlI	GDGCHC	1 cut(s)	349
MnlI	CCTC	6 cut(s)	178, 191, 235, 275, 302, 328
MspI	CCGG	4 cut(s)	49, 207, 213, 343
MspR9I	CCNGG	4 cut(s)	107, 168, 233, 344
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	3 cut(s)	107, 168, 233
MwoI	GCNNNNNNNGC	4 cut(s)	186, 203, 344, 560
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	1 cut(s)	450
NlaIV	GGNNCC	2 cut(s)	211, 347
NmuCI	GTSAC	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	8, 445
PkrI	GCNGC	1 cut(s)	505
Psp6I	CCWGG	3 cut(s)	105, 166, 231
PspGI	CCWGG	3 cut(s)	105, 166, 231
PspN4I	GGNNCC	2 cut(s)	211, 347
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	289, 345, 346
PspXI	VCTCGAGB	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	329
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	3 cut(s)	289, 345, 346
ScrFI	CCNGG	4 cut(s)	107, 168, 233, 344
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	7 cut(s)	90, 117, 231, 246, 260, 300, 458
SfiI	GGCCNNNNNGGCC	1 cut(s)	344
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	3 cut(s)	182, 293, 367
SmoI	CTYRAG	3 cut(s)	182, 293, 367
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	4 cut(s)	105, 166, 231, 342
TaiI	ACGT	2 cut(s)	90, 117
TaqI	TCGA	3 cut(s)	183, 330, 548
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	2 cut(s)	8, 445
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	57, 560
XbaI	TCTAGA	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 532
XhoI	CTCGAG	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.