Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Forward (+)

28541993 .. 28542773

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1155400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGTCATCGTCGACAACAAGCGTTCACGTCATGGCCCTGGACGGCCTGGTCAACGTGAACTCACTCTTCACCATTGCCGTCTTCGTGGGGCTTTCTCTGGCGACTCCGGGACAGAGGAGCCTCGAGAACCGGACATCCTGCGACGCTGGGATCGACGTGGCGAAGAAGCTGCTGGTGTTCGAGGTTGTCTCGTTCAGCTTCTTCCTGTTCTCATCGCTTGTGGCGCAGGGACTGAAGCTGGCGATCAACCTGCTCAACAGCAAGAAAGGAGAGGACCCGTTACAGGCCCACATCAATAAGAAGGTGTTGAGATTCGGGATGTTGGGGTCGGCTTTCGGGTCGGTCATGGGTTGCGTGTTTCTGATGCTGTCGATGGTGAATGTGATCCAGATCAGGCTGGGGATGCTGTCGTGTGGCAGCAAATCCTCCGTCCATGCTGTGGCGGCGCTTGTTGTTTTGGTCACGACGGCTCTTTTGGTTTATATTTCTACTGCTGTTTATGCTTTTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.23

Weight (kDa)

9.37

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	14
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	161, 382
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	286, 442
AjiI	CACGTC	2 cut(s)	31, 160
AjnI	CCWGG	2 cut(s)	39, 48
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	172, 201, 241
AluI	AGCT	3 cut(s)	172, 201, 241
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	161, 382
AlwNI	CAGNNNCTG	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	36, 46, 288
ApeKI	GCWGC	2 cut(s)	172, 420
ArsI	GACNNNNNNTTYG	4 cut(s)	417, 449, 460, 492
AspLEI	GCGC	2 cut(s)	229, 451
AspS9I	GGNCC	3 cut(s)	37, 277, 289
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	64, 391
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	159, 432
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	61, 65, 486
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 235, 269
BciT130I	CCWGG	2 cut(s)	41, 50
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	517
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	173, 421, 447
BlsI	GCNGC	3 cut(s)	174, 422, 448
Bme1390I	CCNGG	3 cut(s)	41, 50, 111
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	2 cut(s)	31, 160
BmgT120I	GGNCC	3 cut(s)	37, 277, 289
BmiI	GGNNCC	2 cut(s)	122, 279
BmrFI	CCNGG	3 cut(s)	41, 50, 111
BmsI	GCATC	2 cut(s)	357, 396
BpiI	GAAGAC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuMI	CCSGG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 442
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	41, 50
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	3 cut(s)	137, 327, 411
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	2 cut(s)	286, 442
BseMI	GCAATG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	159, 432
BseYI	CCCAGC	2 cut(s)	149, 400
BshFI	GGCC	3 cut(s)	38, 48, 290
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	110, 133
BslFI	GGGAC	2 cut(s)	126, 246
BslI	CCNNNNNNNGG	2 cut(s)	286, 442
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	126, 246
BsnI	GGCC	3 cut(s)	38, 48, 290
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	153, 246, 387, 393
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	3 cut(s)	38, 48, 290
BspLI	GGNNCC	2 cut(s)	122, 279
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	161, 382
BsrDI	GCAATG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	153, 246, 387, 393
Bst2UI	CCWGG	2 cut(s)	41, 50
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	137, 327, 411
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	229, 451
BstKTI	GATC	4 cut(s)	156, 249, 390, 396
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	4 cut(s)	153, 246, 387, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 406, 446, 503
BstNI	CCWGG	2 cut(s)	41, 50
BstSCI	CCNGG	3 cut(s)	39, 48, 109
BstV1I	GCAGC	2 cut(s)	159, 432
BstV2I	GAAGAC	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	38, 48, 290
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	2 cut(s)	31, 160
BtsCI	GGATG	3 cut(s)	137, 327, 411
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	2 cut(s)	229, 451
Cfr13I	GGNCC	3 cut(s)	37, 277, 289
CseI	GACGC	1 cut(s)	155
CviAII	CATG	3 cut(s)	34, 349, 437
DpnI	GATC	4 cut(s)	155, 248, 389, 395
DpnII	GATC	4 cut(s)	153, 246, 387, 393
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	39, 48
FaeI	CATG	3 cut(s)	37, 352, 440
FaiI	YATR	5 cut(s)	35, 350, 438, 486, 504
FaqI	GGGAC	2 cut(s)	126, 246
FatI	CATG	3 cut(s)	33, 348, 436
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	173, 421, 447
FokI	GGATG	3 cut(s)	124, 334, 418
Fsp4HI	GCNGC	3 cut(s)	173, 421, 447
FspBI	CTAG	1 cut(s)	517
GlaI	GCGC	2 cut(s)	228, 450
GluI	GCNGC	3 cut(s)	173, 421, 447
GsaI	CCCAGC	2 cut(s)	153, 404
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	38, 48, 290
HapII	CCGG	2 cut(s)	110, 133
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	229, 451
Hin1II	CATG	3 cut(s)	37, 352, 440
Hin6I	GCGC	2 cut(s)	227, 449
HinP1I	GCGC	2 cut(s)	227, 449
HincII	GTYRAC	2 cut(s)	15, 55
HindII	GTYRAC	2 cut(s)	15, 55
HinfI	GANTC	2 cut(s)	106, 315
HpaII	CCGG	2 cut(s)	110, 133
HphI	GGTGA	2 cut(s)	64, 391
Hpy166II	GTNNAC	4 cut(s)	15, 28, 55, 61
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	4 cut(s)	127, 319, 391, 466
Hpy8I	GTNNAC	4 cut(s)	15, 28, 55, 61
Hpy99I	CGWCG	4 cut(s)	16, 149, 161, 472
HpyAV	CCTTC	1 cut(s)	298
HpyCH4IV	ACGT	3 cut(s)	30, 57, 159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 406, 446, 503
HpySE526I	ACGT	3 cut(s)	30, 57, 159
Hsp92II	CATG	3 cut(s)	37, 352, 440
HspAI	GCGC	2 cut(s)	227, 449
Kzo9I	GATC	4 cut(s)	153, 246, 387, 393
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	159, 432
LweI	GCATC	2 cut(s)	357, 396
MaeI	CTAG	1 cut(s)	517
MaeII	ACGT	3 cut(s)	30, 57, 159
MaeIII	GTNAC	2 cut(s)	282, 463
MalI	GATC	4 cut(s)	155, 248, 389, 395
MboI	GATC	4 cut(s)	153, 246, 387, 393
MboII	GAAGA	5 cut(s)	61, 76, 178, 196, 503
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	111, 134, 178, 268, 439
MspI	CCGG	2 cut(s)	110, 133
MspR9I	CCNGG	3 cut(s)	41, 50, 111
MvaI	CCWGG	2 cut(s)	41, 50
MwoI	GCNNNNNNNGC	4 cut(s)	226, 406, 446, 503
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	4 cut(s)	153, 246, 387, 393
NlaIII	CATG	3 cut(s)	37, 352, 440
NlaIV	GGNNCC	2 cut(s)	122, 279
NmuCI	GTSAC	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 153
PfeI	GAWTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	174, 422, 448
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	39, 48
PspFI	CCCAGC	2 cut(s)	149, 400
PspGI	CCWGG	2 cut(s)	39, 48
PspN4I	GGNNCC	2 cut(s)	122, 279
PspPI	GGNCC	3 cut(s)	37, 277, 289
PspPPI	RGGWCCY	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	13
SatI	GCNGC	3 cut(s)	173, 421, 447
Sau3AI	GATC	4 cut(s)	153, 246, 387, 393
Sau96I	GGNCC	3 cut(s)	37, 277, 289
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	41, 50, 111
SetI	ASST	9 cut(s)	33, 60, 162, 174, 189, 203, 243, 255, 309
SfaNI	GCATC	2 cut(s)	357, 396
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	517
StyD4I	CCNGG	3 cut(s)	39, 48, 109
TaiI	ACGT	3 cut(s)	33, 60, 162
TaqI	TCGA	5 cut(s)	14, 126, 156, 183, 374
TaqII	GACCGA	1 cut(s)	334
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	172, 420
Tsp45I	GTSAC	1 cut(s)	463
TspGWI	ACGGA	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.