Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Forward (+)

28602583 .. 28603524

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1156100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATGAATCAGACGACTACCCAAGGGAGTGCAACACCCGAGACTGCCGGGAAGTGATGTCATCATCGTCGACAACAAGCGTCCACGTCACGGCCCTGGACGGCCTGGTCAACGTGAACTCACTCTTCACCATCGCCGTCTTCGTGGGGCTTTCTCTGGCGACTCCAGGGCAGAGGAGCCTCGCAAACCGGAGATCCTGCGACGCCGGGAACGACGTGGCGAAGAAGCTGCTGGTGTTCGAGGTTGTCTCCTTCAGCTTCTTCCTGTTCTCATCGCTGGTGGCGCAGGGACTGAAGTTGGCGATCAACCTGCTCAACAGCAAGAATGTAGAGGACGCGTTCCGGGGTCACATCAATCTGAAGGTGTTGAGATTCGGGATGTTGGGGTCGGCTTTTGGGTCGGTCTTGGGTTGCGTGTTTCTGGTGCTGTCGATGGTGAATGTGATCCAGATCAGGCTGGGGCTGCTGTCGTGTGGCAGCAAATCCGCCATCCATGCTGTGGCGGTGCTTGTTGTTTTGGTCACGACGGCTCTTTTGGTTTATATTTCTACTGCTGTTTATGCTTTTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.51

Weight (kDa)

8.33

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	486, 503
AclWI	GGATC	2 cut(s)	189, 439
AcuI	CTGAAG	3 cut(s)	238, 314, 380
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	91, 499
AflIII	ACRYGT	1 cut(s)	336
AjiI	CACGTC	2 cut(s)	88, 217
AjnI	CCWGG	3 cut(s)	96, 105, 166
AluBI	AGCT	2 cut(s)	229, 258
AluI	AGCT	2 cut(s)	229, 258
Alw26I	GTCTC	2 cut(s)	36, 253
AlwI	GGATC	2 cut(s)	189, 439
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	93, 103
ApeKI	GCWGC	3 cut(s)	229, 463, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	3 cut(s)	50, 208, 344
AsuHPI	GGTGA	2 cut(s)	121, 448
AvaI	CYCGRG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	216, 450, 489
BccI	CCATC	3 cut(s)	140, 427, 497
BceAI	ACGGC	4 cut(s)	108, 118, 122, 543
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 292, 326
BciT130I	CCWGG	3 cut(s)	98, 107, 168
BcnI	CCSGG	3 cut(s)	50, 208, 344
BcoDI	GTCTC	2 cut(s)	36, 253
BfaI	CTAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	230, 464, 478
BlsI	GCNGC	3 cut(s)	231, 465, 479
Bme1390I	CCNGG	6 cut(s)	50, 98, 107, 168, 208, 344
BmeT110I	CYCGRG	1 cut(s)	39
BmgBI	CACGTC	2 cut(s)	88, 217
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	6 cut(s)	50, 98, 107, 168, 208, 344
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	150
BpuMI	CCSGG	3 cut(s)	50, 208, 344
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	4 cut(s)	23, 96, 167, 343
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 499
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	3 cut(s)	98, 107, 168
BseDI	CCNNGG	4 cut(s)	23, 96, 167, 343
BseGI	GGATG	3 cut(s)	10, 384, 489
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	91, 499
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	216, 450, 489
BseYI	CCCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	95, 105
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	49, 190, 207, 343
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	91, 499
BsmAI	GTCTC	2 cut(s)	36, 253
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	95, 105
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	194, 303, 444, 450
BspACI	CCGC	2 cut(s)	486, 503
BspANI	GGCC	2 cut(s)	95, 105
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	189, 439
BssECI	CCNNGG	4 cut(s)	23, 96, 167, 343
BssMI	GATC	4 cut(s)	194, 303, 444, 450
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	3 cut(s)	98, 107, 168
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	10, 384, 489
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	4 cut(s)	197, 306, 447, 453
BstMAI	GTCTC	2 cut(s)	36, 253
BstMBI	GATC	4 cut(s)	194, 303, 444, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 463, 494, 560
BstNI	CCWGG	3 cut(s)	98, 107, 168
BstSCI	CCNGG	6 cut(s)	48, 96, 105, 166, 206, 342
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	216, 450, 489
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	95, 105
BtgZI	GCGATG	2 cut(s)	118, 258
BtrI	CACGTC	2 cut(s)	88, 217
BtsCI	GGATG	3 cut(s)	10, 384, 489
BveI	ACCTGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	3 cut(s)	70, 212, 344
CviAII	CATG	1 cut(s)	494
DpnI	GATC	4 cut(s)	196, 305, 446, 452
DpnII	GATC	4 cut(s)	194, 303, 444, 450
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	23
Eco57I	CTGAAG	3 cut(s)	238, 314, 380
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	3 cut(s)	96, 105, 166
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	497
FaiI	YATR	3 cut(s)	495, 543, 561
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	230, 464, 478
FokI	GGATG	3 cut(s)	17, 391, 476
Fsp4HI	GCNGC	3 cut(s)	230, 464, 478
FspBI	CTAG	1 cut(s)	574
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	230, 464, 478
GsaI	CCCAGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	95, 105
HapII	CCGG	4 cut(s)	49, 190, 207, 343
HgaI	GACGC	3 cut(s)	70, 212, 344
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	2 cut(s)	72, 112
HindII	GTYRAC	2 cut(s)	72, 112
HinfI	GANTC	3 cut(s)	8, 163, 372
HpaII	CCGG	4 cut(s)	49, 190, 207, 343
HphI	GGTGA	2 cut(s)	121, 448
Hpy166II	GTNNAC	4 cut(s)	72, 85, 112, 118
Hpy188I	TCNGA	2 cut(s)	13, 360
Hpy188III	TCNNGA	3 cut(s)	376, 448, 523
Hpy8I	GTNNAC	4 cut(s)	72, 85, 112, 118
Hpy99I	CGWCG	4 cut(s)	73, 206, 218, 529
HpyAV	CCTTC	2 cut(s)	262, 355
HpyCH4IV	ACGT	3 cut(s)	87, 114, 216
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 463, 494, 560
HpySE526I	ACGT	3 cut(s)	87, 114, 216
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	194, 303, 444, 450
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	216, 450, 489
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	3 cut(s)	87, 114, 216
MaeIII	GTNAC	3 cut(s)	88, 347, 520
MalI	GATC	4 cut(s)	196, 305, 446, 452
MboI	GATC	4 cut(s)	194, 303, 444, 450
MboII	GAAGA	5 cut(s)	118, 133, 235, 253, 560
MflI	RGATCY	1 cut(s)	194
MluI	ACGCGT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	168, 191, 235, 325
MspI	CCGG	4 cut(s)	49, 190, 207, 343
MspR9I	CCNGG	6 cut(s)	50, 98, 107, 168, 208, 344
MvaI	CCWGG	3 cut(s)	98, 107, 168
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	4 cut(s)	283, 463, 494, 560
NciI	CCSGG	3 cut(s)	50, 208, 344
NdeII	GATC	4 cut(s)	194, 303, 444, 450
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	3 cut(s)	88, 347, 520
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 210
PfeI	GAWTC	2 cut(s)	8, 372
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	231, 465, 479
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	96, 105, 166
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	3 cut(s)	96, 105, 166
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	70
SatI	GCNGC	3 cut(s)	230, 464, 478
Sau3AI	GATC	4 cut(s)	194, 303, 444, 450
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	6 cut(s)	50, 98, 107, 168, 208, 344
SetI	ASST	8 cut(s)	90, 117, 219, 231, 246, 260, 312, 366
SsiI	CCGC	2 cut(s)	486, 503
SspMI	CTAG	1 cut(s)	574
StyD4I	CCNGG	6 cut(s)	48, 96, 105, 166, 206, 342
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	3 cut(s)	90, 117, 219
TaqI	TCGA	3 cut(s)	71, 240, 431
TaqII	GACCGA	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	8, 372
TseFI	GTSAC	3 cut(s)	88, 347, 520
TseI	GCWGC	3 cut(s)	229, 463, 477
Tsp45I	GTSAC	3 cut(s)	88, 347, 520
TspDTI	ATGAA	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.