Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010105

Physical Location & Seq

Genomic Coordinates Reverse (-)

23480274 .. 23480952

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGAATCTGACGAGTACCCAAAAGAGCATTACGGCGGCCAAACGTCCATGTCGTCCTCATCAACCACAAGCGTCCACGTCACCGCCCTGGACGGCCTGGTCAACGTCAACTCCCTCTTCACCATCGCGGTCTTCGTGGGCCTGTCCCTGACCGTACCAGGACAAAAGAGCCTCGAGAACCGGACAGCCTGCGACGCCGGCGATGACGTGGCGAAGAAGCTTCTGGTGTTCGAGGTTGTCTCCTTCAGCTTCTTCCTCTTCTCGTCTCTGGTCGCCCAGGGCCTCAAGCTCGCCATCAACTTGCTTAACAGCAAGGATGTCGACGAGGCCTTCCGGGCCCACATCAACCTCAAGGTGCTGAGGTTCGGGATGTTGGGGTCGGCCTTCGGATCCGTCATGGGTTGCGTCTTTCTCATGTTGTCGATGGTCAATGTGATCCAGATCCGGTTGGGAATGTTGTCGTGTGGGAGCAAATCTGCTGTCCATTCTGTTGCGGCTCTTGTCGTTTTGGTCTCTTCGGCGCTCTTGGTCTATCTCTCTACTGCTATCTATGCTTTTCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.18

Weight (kDa)

6.17

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01580 AT3G07510 AT3G07510 AT3G07510
fragaria_vesca	FvH4_2g17600 FvH4_2g17600
malus_domestica	MD05G1155400.v1.1 MD05G1155900.v1.1 MD05G1156100.v1.1 MD10G1149800.v1.1
prunus_persica	Prupe.8G188200_v2.0.a1
pyrus_communis	pycom10g12920
rosa_chinensis	RchiOBHm_Chr6g0282541
rosa_laevigata	RLG00000012886
rosa_multiflora	Rmu_co8275275.1_g000001 Rmu_sc0005697.1_g000012
rosa_roxburghii	Rroxscaffold_7G00186280
rosa_rugosa	Rorug06G0147400
rosa_samantha	Rh6AG260600 Rh6BG263800
rosa_wichuraiana	Rw6G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	131
AciI	CCGC	4 cut(s)	39, 87, 131, 497
AclWI	GGATC	4 cut(s)	387, 400, 433, 439
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	20, 159
AjiI	CACGTC	2 cut(s)	82, 211
AjnI	CCWGG	4 cut(s)	90, 99, 160, 279
AluBI	AGCT	3 cut(s)	223, 252, 292
AluI	AGCT	3 cut(s)	223, 252, 292
Alw26I	GTCTC	3 cut(s)	247, 273, 520
AlwI	GGATC	4 cut(s)	387, 400, 433, 439
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	7 cut(s)	40, 97, 142, 283, 330, 339, 384
ApaI	GGGCCC	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	4 cut(s)	142, 283, 339, 340
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	76, 115
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	134, 305, 421
BceAI	ACGGC	2 cut(s)	52, 112
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	4 cut(s)	92, 101, 162, 281
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	247, 273, 520
BfaI	CTAG	1 cut(s)	568
BfoI	RGCGCY	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	40, 498
BlsI	GCNGC	2 cut(s)	41, 499
Bme1390I	CCNGG	5 cut(s)	92, 101, 162, 281, 338
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	82, 211
BmgT120I	GGNCC	4 cut(s)	142, 283, 339, 340
BmiI	GGNNCC	2 cut(s)	341, 394
BmrFI	CCNGG	5 cut(s)	92, 101, 162, 281, 338
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	272, 338
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	90, 279, 280
BsaWI	WCCGGW	2 cut(s)	183, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	4 cut(s)	92, 101, 162, 281
BseDI	CCNNGG	3 cut(s)	90, 279, 280
BseGI	GGATG	3 cut(s)	10, 325, 378
BseJI	GATNNNNATC	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	7 cut(s)	42, 99, 144, 285, 332, 341, 386
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	184, 201, 337, 448
BslFI	GGGAC	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	247, 273, 520
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	7 cut(s)	42, 99, 144, 285, 332, 341, 386
Bso31I	GGTCTC	1 cut(s)	520
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	392, 438, 444
BspACI	CCGC	4 cut(s)	39, 87, 131, 497
BspANI	GGCC	7 cut(s)	42, 99, 144, 285, 332, 341, 386
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	341, 394
BspPI	GGATC	4 cut(s)	387, 400, 433, 439
BspTNI	GGTCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	90, 279, 280
BssMI	GATC	3 cut(s)	392, 438, 444
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	4 cut(s)	92, 101, 162, 281
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	125, 266, 523
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	193, 202, 294
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	10, 325, 378
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	3 cut(s)	395, 441, 447
BstMAI	GTCTC	3 cut(s)	247, 273, 520
BstMBI	GATC	3 cut(s)	392, 438, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 201, 338, 554
BstNI	CCWGG	4 cut(s)	92, 101, 162, 281
BstSCI	CCNGG	5 cut(s)	90, 99, 160, 279, 336
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	392, 444
BstYI	RGATCY	2 cut(s)	392, 444
BsuRI	GGCC	7 cut(s)	42, 99, 144, 285, 332, 341, 386
BtgZI	GCGATG	2 cut(s)	112, 219
BtrI	CACGTC	2 cut(s)	82, 211
BtsCI	GGATG	3 cut(s)	10, 325, 378
Cac8I	GCNNGC	3 cut(s)	193, 202, 294
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	142, 283, 339, 340
CseI	GACGC	3 cut(s)	64, 206, 397
Csp6I	GTAC	2 cut(s)	19, 158
CviAII	CATG	3 cut(s)	52, 400, 418
CviQI	GTAC	2 cut(s)	19, 158
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	394, 440, 446
DpnII	GATC	3 cut(s)	392, 438, 444
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	3 cut(s)	125, 266, 523
EarI	CTCTTC	3 cut(s)	125, 266, 523
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	4 cut(s)	90, 99, 160, 279
EcoT38I	GRGCYC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	3 cut(s)	55, 403, 421
FaiI	YATR	4 cut(s)	53, 401, 419, 555
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	3 cut(s)	51, 399, 417
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	40, 498
FokI	GGATG	3 cut(s)	17, 332, 385
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	2 cut(s)	40, 498
FspBI	CTAG	1 cut(s)	568
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	2 cut(s)	40, 498
HaeII	RGCGCY	1 cut(s)	527
HaeIII	GGCC	7 cut(s)	42, 99, 144, 285, 332, 341, 386
HapII	CCGG	4 cut(s)	184, 201, 337, 448
HgaI	GACGC	3 cut(s)	64, 206, 397
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	55, 403, 421
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	3 cut(s)	106, 112, 325
HindII	GTYRAC	3 cut(s)	106, 112, 325
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	4 cut(s)	184, 201, 337, 448
HphI	GGTGA	2 cut(s)	76, 115
Hpy166II	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy188I	TCNGA	2 cut(s)	13, 392
Hpy188III	TCNNGA	3 cut(s)	178, 370, 442
Hpy8I	GTNNAC	4 cut(s)	79, 106, 112, 325
Hpy99I	CGWCG	2 cut(s)	200, 329
HpyAV	CCTTC	3 cut(s)	256, 343, 397
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	4 cut(s)	47, 81, 108, 210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 201, 338, 554
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	4 cut(s)	47, 81, 108, 210
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	55, 403, 421
HspAI	GCGC	1 cut(s)	524
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	392, 438, 444
LmnI	GCTCC	1 cut(s)	471
MaeI	CTAG	1 cut(s)	568
MaeII	ACGT	4 cut(s)	47, 81, 108, 210
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	394, 440, 446
MboI	GATC	3 cut(s)	392, 438, 444
MboII	GAAGA	7 cut(s)	112, 127, 229, 247, 253, 510, 554
MflI	RGATCY	2 cut(s)	392, 444
MhlI	GDGCHC	1 cut(s)	343
MnlI	CCTC	9 cut(s)	70, 128, 185, 229, 269, 296, 322, 357, 362
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	1 cut(s)	309
MspI	CCGG	4 cut(s)	184, 201, 337, 448
MspR9I	CCNGG	5 cut(s)	92, 101, 162, 281, 338
MvaI	CCWGG	4 cut(s)	92, 101, 162, 281
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	197, 201, 338, 554
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	392, 438, 444
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	55, 403, 421
NlaIV	GGNNCC	2 cut(s)	341, 394
NmuCI	GTSAC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 135
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	41, 499
Psp6I	CCWGG	4 cut(s)	90, 99, 160, 279
PspGI	CCWGG	4 cut(s)	90, 99, 160, 279
PspN4I	GGNNCC	2 cut(s)	341, 394
PspOMI	GGGCCC	1 cut(s)	339
PspPI	GGNCC	4 cut(s)	142, 283, 339, 340
PsuI	RGATCY	2 cut(s)	392, 444
RsaI	GTAC	2 cut(s)	20, 159
RsaNI	GTAC	2 cut(s)	19, 158
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	40, 498
Sau3AI	GATC	3 cut(s)	392, 438, 444
Sau96I	GGNCC	4 cut(s)	142, 283, 339, 340
ScrFI	CCNGG	5 cut(s)	92, 101, 162, 281, 338
SduI	GDGCHC	1 cut(s)	343
SfiI	GGCCNNNNNGGCC	1 cut(s)	338
Sfr274I	CTCGAG	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	3 cut(s)	176, 287, 353
SmoI	CTYRAG	3 cut(s)	176, 287, 353
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	4 cut(s)	39, 87, 131, 497
SspMI	CTAG	1 cut(s)	568
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	5 cut(s)	90, 99, 160, 279, 336
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	4 cut(s)	50, 84, 111, 213
TaqI	TCGA	4 cut(s)	177, 234, 324, 425
TauI	GCSGC	2 cut(s)	42, 500
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.