AT2G01710

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011428
Physical Location & Seq
Forward (+)
315648 .. 316993
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01710.2

Sequence Viewer

Length: 936 bp
ATGGGAGACAACAACCCTAACCGATCAGAAGCAGAACGTCTTCTCGGAATCGCGGAGAAGCTTCTCGAGTCACGAGATCTAAACGGTTCAAAAGAGTTTGCAATCTTAGCTCAAGAGACAGAGCCACTCCTCGAAGGCACCGATCAAATCCTCGCCGTCGTCGATGTCTTACTCTCATCAGCACCAGAGAATCGTATCAAAAACCAACCAAACTGGTACAAAATCCTTCAGATCGAAGATCTAACTGAATCATCAACAGACAACGATCTAATCAAGAAACAATACCGTCGTCTTGCTCTTCTTCTCCACCCTGACAAAAACCGTTTCCCTTTCGCCGATCAAGCTTTCAGATTCGTGCTTGATGCATGGGAAGTTCTATCAACACCTACGAAGAAATCTCAATTCGATGGAGATTTGAATCTCATCTTCACTAAAGTAAATCTCAACACTCAGAAATCGAAGAAGAAAACAACAACGAATGAGAAGATGTCTACGTTTTGGACGGCGTGTCCGTACTGTTACAGTCTTCATGAGTATCCTAGGGTTTATCAAGAGTATTGTATTAGATGTCAAAACTGTCAAAGAGCGTTTCACGCTGCGAGTATTCCTCAGTTGCCTCCGTTGATACCTGGTAAAGATGAGTATTATTGTTGTTGGGGTTTTTTTCCGATGGGGTTTGTTGGTGGTAAAGGAGGAGAAGCTGCCATTGCTAATGGAGTAGATGCAGCTAAGTTCCCTAATTGGATGCCTCCGGTTTTCTCATCCGGCGGCGTTGCAGCTCCTCCAAGTGGTAATGGTGTTAGTTTTGATGGATGGTCAGGTGGTGCGGCGAAGAGAGATAATGAGGCTGTGAGGAGTAATAATGGTGTTGGAGTTAATTCAGATGGAACACCGAAGAAGAGAGGAAGAGGAAGGCCGAAGAAGAATCCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

311

Amino Acids

34.56

Weight (kDa)

8.57

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 115 - 180 1.9e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01710 AT2G01710
fragaria_vesca FvH4_5g35420
malus_domestica MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica Prupe.1G531000_v2.0.a1
pyrus_communis pycom08g16900 pycom15g34460
rosa_chinensis RchiOBHm_Chr7g0236821
rosa_laevigata RLG00000001059
rosa_multiflora Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii Rroxscaffold_3G00224800
rosa_rugosa Rorug07G0299600
rosa_samantha Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana Rw7G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 53
AciI CCGC 3 cut(s) 53, 768, 827
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 2 cut(s) 218, 515
AfiI CCNNNNNNNGG 1 cut(s) 788
AgsI TTSAA 2 cut(s) 90, 418
AhdI GACNNNNNGTC 1 cut(s) 507
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 6 cut(s) 61, 110, 344, 701, 728, 779
AluI AGCT 6 cut(s) 61, 110, 344, 701, 728, 779
Alw26I GTCTC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 4 cut(s) 596, 701, 725, 776
Asp700I GAANNNNTTC 1 cut(s) 39
AspA2I CCTAGG 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 65
AvrII CCTAGG 1 cut(s) 539
BanI GGYRCC 1 cut(s) 137
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 32, 518
BbvI GCAGC 4 cut(s) 583, 688, 737, 788
BccI CCATC 5 cut(s) 401, 664, 803, 807, 878
BceAI ACGGC 2 cut(s) 140, 519
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 540
BfuI GTATCC 1 cut(s) 546
BglII AGATCT 2 cut(s) 76, 238
BisI GCNGC 6 cut(s) 597, 702, 726, 769, 777, 828
BlnI CCTAGG 1 cut(s) 539
BlsI GCNGC 6 cut(s) 598, 703, 727, 770, 778, 829
Bme1390I CCNGG 1 cut(s) 630
BmeRI GACNNNNNGTC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 3 cut(s) 352, 712, 735
BpiI GAAGAC 2 cut(s) 32, 518
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpuEI CTTGAG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 539
BsaWI WCCGGW 2 cut(s) 751, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 705
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 539
BseGI GGATG 3 cut(s) 750, 761, 818
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 2 cut(s) 464, 623
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 4 cut(s) 119, 708, 771, 868
BseXI GCAGC 4 cut(s) 583, 688, 737, 788
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 916
BshNI GGYRCC 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 3 cut(s) 752, 765, 929
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 916
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
BspACI CCGC 3 cut(s) 53, 768, 827
BspANI GGCC 1 cut(s) 916
BspCNI CTCAG 2 cut(s) 463, 622
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 6 cut(s) 86, 287, 323, 518, 524, 578
Bst6I CTCTTC 4 cut(s) 303, 827, 893, 901
BstDEI CTNAG 4 cut(s) 106, 450, 609, 729
BstF5I GGATG 3 cut(s) 750, 761, 818
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 7 cut(s) 26, 79, 145, 234, 241, 268, 340
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
BstMWI GCNNNNNNNGC 4 cut(s) 107, 341, 593, 707
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 4 cut(s) 583, 688, 737, 788
BstV2I GAAGAC 2 cut(s) 32, 518
BstX2I RGATCY 2 cut(s) 76, 238
BstYI RGATCY 2 cut(s) 76, 238
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 916
BtsCI GGATG 3 cut(s) 750, 761, 818
CciI TCATGA 1 cut(s) 529
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 2 cut(s) 217, 514
CviAII CATG 2 cut(s) 366, 530
CviJI RGCY 9 cut(s) 61, 110, 124, 344, 701, 728, 779, 848, 916
CviKI_1 RGCY 9 cut(s) 61, 110, 124, 344, 701, 728, 779, 848, 916
CviQI GTAC 2 cut(s) 217, 514
DdeI CTNAG 4 cut(s) 106, 450, 609, 729
DpnI GATC 7 cut(s) 25, 78, 144, 233, 240, 267, 339
DpnII GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
DriI GACNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 4 cut(s) 303, 827, 893, 901
Eam1105I GACNNNNNGTC 1 cut(s) 507
EarI CTCTTC 4 cut(s) 303, 827, 893, 901
Eco130I CCWWGG 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 2 cut(s) 369, 533
FaiI YATR 2 cut(s) 367, 531
FatI CATG 2 cut(s) 365, 529
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 6 cut(s) 597, 702, 726, 769, 777, 828
FokI GGATG 3 cut(s) 748, 757, 825
Fsp4HI GCNGC 6 cut(s) 597, 702, 726, 769, 777, 828
FspBI CTAG 1 cut(s) 540
GluI GCNGC 6 cut(s) 597, 702, 726, 769, 777, 828
HaeIII GGCC 1 cut(s) 916
HapII CCGG 3 cut(s) 752, 765, 929
Hin1II CATG 2 cut(s) 369, 533
HindIII AAGCTT 2 cut(s) 59, 342
HinfI GANTC 7 cut(s) 48, 68, 190, 248, 351, 418, 925
HpaII CCGG 3 cut(s) 752, 765, 929
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 7 cut(s) 28, 47, 231, 350, 453, 669, 883
Hpy188III TCNNGA 6 cut(s) 65, 72, 113, 274, 530, 551
Hpy8I GTNNAC 1 cut(s) 492
Hpy99I CGWCG 3 cut(s) 161, 164, 291
HpyAV CCTTC 3 cut(s) 128, 236, 906
HpyCH4III ACNGT 6 cut(s) 86, 287, 323, 518, 524, 578
HpyCH4IV ACGT 2 cut(s) 37, 494
HpyCH4V TGCA 4 cut(s) 101, 365, 725, 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 341, 593, 707
HpyF3I CTNAG 4 cut(s) 106, 450, 609, 729
HpySE526I ACGT 2 cut(s) 37, 494
Hsp92II CATG 2 cut(s) 369, 533
Kzo9I GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 784
LpnPI CCDG 8 cut(s) 198, 199, 324, 615, 642, 765, 778, 804
Lsp1109I GCAGC 4 cut(s) 583, 688, 737, 788
LweI GCATC 3 cut(s) 352, 712, 735
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 1 cut(s) 540
MaeII ACGT 2 cut(s) 37, 494
MaeIII GTNAC 2 cut(s) 69, 518
MalI GATC 7 cut(s) 25, 78, 144, 233, 240, 267, 339
MboI GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
MflI RGATCY 2 cut(s) 76, 238
MluCI AATT 3 cut(s) 401, 739, 877
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 850
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 1 cut(s) 876
MspI CCGG 3 cut(s) 752, 765, 929
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 4 cut(s) 107, 341, 593, 707
NdeII GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
NlaIII CATG 2 cut(s) 369, 533
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 65
PagI TCATGA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 159, 509
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 6 cut(s) 48, 190, 248, 351, 418, 925
PkrI GCNGC 6 cut(s) 598, 703, 727, 770, 778, 829
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 2 cut(s) 76, 238
RsaI GTAC 2 cut(s) 218, 515
RsaNI GTAC 2 cut(s) 217, 514
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 876
SatI GCNGC 6 cut(s) 597, 702, 726, 769, 777, 828
Sau3AI GATC 7 cut(s) 23, 76, 142, 231, 238, 265, 337
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 630
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 3 cut(s) 352, 712, 735
Sfr274I CTCGAG 1 cut(s) 65
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 65, 111
SmoI CTYRAG 2 cut(s) 65, 111
Sse9I AATT 3 cut(s) 401, 739, 877
SsiI CCGC 3 cut(s) 53, 768, 827
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 6 cut(s) 86, 287, 323, 518, 524, 578
TaiI ACGT 2 cut(s) 40, 497
TaqI TCGA 6 cut(s) 66, 132, 162, 234, 405, 458
TasI AATT 3 cut(s) 401, 739, 877
TauI GCSGC 2 cut(s) 771, 830
TfiI GAWTC 6 cut(s) 48, 190, 248, 351, 418, 925
Tru1I TTAA 1 cut(s) 876
Tru9I TTAA 1 cut(s) 876
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 4 cut(s) 596, 701, 725, 776
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 2 cut(s) 501, 609
XhoI CTCGAG 1 cut(s) 65
XmaJI CCTAGG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.