MD15G1301600.v1.1

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011428
Physical Location & Seq
Reverse (-)
29004278 .. 29004966
689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1301600.v1.1.491

Sequence Viewer

Length: 615 bp
ATGGATCCAAACAGGGTAGAAGCCGAGCGATTGCTCGGAATCGCGGAGAAGCTTCTACACAGCCGGGATCTCAGCAGCTGCCGTGACTTCGCAATTCTAGCTCAGGAGACCGAGCCGCTGCTGGAGGGGTCAGATCAGATCTTGGCCGTCGTCGATGTGCTCTTAGCCGCCGACAAACGCGTCAACAACCATCCCGACTGGTACGCCGTTCTTCTGTCCGATCACCGATCTGACGACCTCGATCACATCAAGAAATCTTACCGACGGCTAGCGTTACTCCTCCACCCGGACAAGAACAAGTGCGCCTACGCTGAGCACGCGTTCAAGCTCGTAGCCGATGCATGGGTGGTTCTGTCCGATCCGGCCAAGAAGCAGATTTACGACAACGAGCTGGGGCCGTTCAGCCGGATCGATCTCGGCTCTTTGATTTCGAACAAATTACCGGTGCGGCGGGACAGCCGGGCCCGAACCAACGCCAGGGTGGGAAACGACGGCCAGCAGCAGCCGAGGTCGAGTTTGTTGACTTTCTGGACGACTTGCCCGTACTGTTACGTGTTGTACGAGTACCCTAGGGTTTACGAGAGCTGCTGTTTGAGGTGTCAGAATTGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF3675 RINGv

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

6.59

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 128 1.1e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01710 AT2G01710
fragaria_vesca FvH4_5g35420
malus_domestica MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica Prupe.1G531000_v2.0.a1
pyrus_communis pycom08g16900 pycom15g34460
rosa_chinensis RchiOBHm_Chr7g0236821
rosa_laevigata RLG00000001059
rosa_multiflora Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii Rroxscaffold_3G00224800
rosa_rugosa Rorug07G0299600
rosa_samantha Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana Rw7G037750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccII CGCG 3 cut(s) 44, 180, 320
AciI CCGC 5 cut(s) 44, 116, 168, 448, 451
AclWI GGATC 4 cut(s) 12, 75, 353, 416
AcoI YGGCCR 3 cut(s) 144, 363, 493
AfaI GTAC 4 cut(s) 203, 545, 560, 566
AfiI CCNNNNNNNGG 3 cut(s) 286, 342, 477
AflIII ACRYGT 3 cut(s) 178, 318, 552
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 1 cut(s) 612
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 6 cut(s) 52, 78, 101, 328, 391, 585
AluI AGCT 6 cut(s) 52, 78, 101, 328, 391, 585
Alw21I GWGCWC 2 cut(s) 162, 318
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 4 cut(s) 12, 75, 353, 416
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 5 cut(s) 144, 363, 395, 462, 493
ApaI GGGCCC 1 cut(s) 466
ApeKI GCWGC 6 cut(s) 75, 78, 118, 499, 502, 585
AsiGI ACCGGT 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 569
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 395, 462, 463
AsuC2I CCSGG 3 cut(s) 65, 287, 461
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 431
AsuNHI GCTAGC 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 466
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
Bbv12I GWGCWC 2 cut(s) 162, 318
BbvI GCAGC 6 cut(s) 65, 87, 105, 511, 514, 572
BccI CCATC 1 cut(s) 198
BceAI ACGGC 6 cut(s) 66, 131, 191, 281, 382, 508
BciT130I CCWGG 1 cut(s) 478
BcnI CCSGG 3 cut(s) 65, 287, 461
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 3 cut(s) 98, 269, 570
BglII AGATCT 1 cut(s) 138
BisI GCNGC 9 cut(s) 76, 79, 116, 119, 168, 449, 500, 503, 586
BlnI CCTAGG 1 cut(s) 569
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 9 cut(s) 77, 80, 117, 120, 169, 450, 501, 504, 587
Bme1390I CCNGG 4 cut(s) 65, 287, 461, 478
BmgBI CACGTC 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 395, 462, 463
BmiI GGNNCC 3 cut(s) 6, 396, 464
BmrFI CCNGG 4 cut(s) 65, 287, 461, 478
BmsI GCATC 1 cut(s) 328
BmtI GCTAGC 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 431
BpuMI CCSGG 3 cut(s) 65, 287, 461
Bsa29I ATCGAT 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 477, 506, 569
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 342, 477
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 478
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 477, 506, 569
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 3 cut(s) 286, 342, 477
BseMII CTCAG 3 cut(s) 85, 116, 303
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 6 cut(s) 65, 87, 105, 511, 514, 572
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 3 cut(s) 44, 180, 320
BshFI GGCC 5 cut(s) 146, 365, 397, 464, 495
BshTI ACCGGT 1 cut(s) 442
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 162, 318
BsiSI CCGG 6 cut(s) 64, 287, 362, 406, 443, 460
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 3 cut(s) 286, 342, 477
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 5 cut(s) 146, 365, 397, 464, 495
Bso31I GGTCTC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 431
Bsp120I GGGCCC 1 cut(s) 462
Bsp1286I GDGCHC 3 cut(s) 162, 318, 466
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 5 cut(s) 44, 116, 168, 448, 451
BspANI GGCC 5 cut(s) 146, 365, 397, 464, 495
BspCNI CTCAG 3 cut(s) 84, 115, 304
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 3 cut(s) 44, 180, 320
BspLI GGNNCC 3 cut(s) 6, 396, 464
BspOI GCTAGC 1 cut(s) 272
BspPI GGATC 4 cut(s) 12, 75, 353, 416
BspT104I TTCGAA 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 3 cut(s) 477, 506, 569
BssT1I CCWWGG 1 cut(s) 569
Bst2UI CCWGG 1 cut(s) 478
Bst4CI ACNGT 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 270, 318, 497
BstDEI CTNAG 4 cut(s) 71, 102, 163, 312
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 3 cut(s) 44, 180, 320
BstHHI GCGC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 98, 317
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 4 cut(s) 63, 285, 459, 476
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 3 cut(s) 44, 180, 320
BstV1I GCAGC 6 cut(s) 65, 87, 105, 511, 514, 572
BstX2I RGATCY 3 cut(s) 4, 67, 138
BstYI RGATCY 3 cut(s) 4, 67, 138
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 5 cut(s) 146, 365, 397, 464, 495
BsuTUI ATCGAT 1 cut(s) 411
BtrI CACGTC 1 cut(s) 612
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 270, 318, 497
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 395, 462, 463
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 1 cut(s) 169
Csp6I GTAC 4 cut(s) 202, 544, 559, 565
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 1 cut(s) 342
CviQI GTAC 4 cut(s) 202, 544, 559, 565
DdeI CTNAG 4 cut(s) 71, 102, 163, 312
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 144, 363, 493
Eco130I CCWWGG 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 466
Eco31I GGTCTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 1 cut(s) 345
FaiI YATR 1 cut(s) 343
FaqI GGGAC 1 cut(s) 467
FatI CATG 1 cut(s) 341
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 9 cut(s) 76, 79, 116, 119, 168, 449, 500, 503, 586
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 9 cut(s) 76, 79, 116, 119, 168, 449, 500, 503, 586
FspBI CTAG 3 cut(s) 98, 269, 570
GlaI GCGC 1 cut(s) 304
GluI GCNGC 9 cut(s) 76, 79, 116, 119, 168, 449, 500, 503, 586
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 5 cut(s) 146, 365, 397, 464, 495
HapII CCGG 6 cut(s) 64, 287, 362, 406, 443, 460
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 305
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 2 cut(s) 184, 522
HindII GTYRAC 2 cut(s) 184, 522
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 39
HpaII CCGG 6 cut(s) 64, 287, 362, 406, 443, 460
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 184, 522, 577
Hpy188I TCNGA 7 cut(s) 38, 133, 138, 220, 232, 358, 603
Hpy188III TCNNGA 4 cut(s) 104, 194, 250, 529
Hpy8I GTNNAC 3 cut(s) 184, 522, 577
Hpy99I CGWCG 4 cut(s) 152, 155, 267, 494
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 552, 611
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 317
HpyF3I CTNAG 4 cut(s) 71, 102, 163, 312
HpySE526I ACGT 2 cut(s) 552, 611
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 303
Lsp1109I GCAGC 6 cut(s) 65, 87, 105, 511, 514, 572
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 98, 269, 570
MaeII ACGT 2 cut(s) 552, 611
MaeIII GTNAC 3 cut(s) 83, 273, 548
MboII GAAGA 1 cut(s) 203
MflI RGATCY 3 cut(s) 4, 67, 138
MhlI GDGCHC 3 cut(s) 162, 318, 466
MluCI AATT 3 cut(s) 93, 437, 604
MluI ACGCGT 2 cut(s) 178, 318
MnlI CCTC 5 cut(s) 118, 248, 290, 501, 588
Mph1103I ATGCAT 1 cut(s) 343
MspA1I CMGCKG 2 cut(s) 78, 118
MspI CCGG 6 cut(s) 64, 287, 362, 406, 443, 460
MspR9I CCNGG 4 cut(s) 65, 287, 461, 478
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 3 cut(s) 44, 180, 320
MwoI GCNNNNNNNGC 2 cut(s) 98, 317
NciI CCSGG 3 cut(s) 65, 287, 461
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 3 cut(s) 6, 396, 464
NmeAIII GCCGAG 3 cut(s) 49, 396, 531
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 343
NspV TTCGAA 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 558
PfeI GAWTC 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 9 cut(s) 77, 80, 117, 120, 169, 450, 501, 504, 587
Ppu21I YACGTR 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 3 cut(s) 6, 396, 464
PspOMI GGGCCC 1 cut(s) 462
PspPI GGNCC 3 cut(s) 395, 462, 463
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 3 cut(s) 4, 67, 138
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 4 cut(s) 203, 545, 560, 566
RsaNI GTAC 4 cut(s) 202, 544, 559, 565
SatI GCNGC 9 cut(s) 76, 79, 116, 119, 168, 449, 500, 503, 586
Sau96I GGNCC 3 cut(s) 395, 462, 463
ScrFI CCNGG 4 cut(s) 65, 287, 461, 478
SduI GDGCHC 3 cut(s) 162, 318, 466
SfaNI GCATC 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 431
Sse9I AATT 3 cut(s) 93, 437, 604
SsiI CCGC 5 cut(s) 44, 116, 168, 448, 451
SspMI CTAG 3 cut(s) 98, 269, 570
StyD4I CCNGG 4 cut(s) 63, 285, 459, 476
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 555, 614
TaqI TCGA 5 cut(s) 153, 240, 411, 431, 512
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 93, 437, 604
TauI GCSGC 3 cut(s) 118, 170, 451
TfiI GAWTC 1 cut(s) 39
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 6 cut(s) 75, 78, 118, 499, 502, 585
Tsp45I GTSAC 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 569
XspI CTAG 3 cut(s) 98, 269, 570
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.