Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002867.1

Orthogroup ID

OG0011428

Physical Location & Seq

Genomic Coordinates Reverse (-)

101942 .. 103135

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002867.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgaccaaaacacccaccagcaaaagaaccagcgtgaaaacactccctgccatttccagcaaaaccaagcccagaattacaattccatttctatttctatttctatttctatttgatcttttccacacaaaccaaaaagcaaactccaaaacagcgatcgccgtcgtcggcgatctcaatcggaaaagtatggaccacaatccaaacagagccgaagccgagcggttgctcggaatcgccgagaagctcctacagaaccgagatctgagcagctcgcgcgacttcgccattctggcgcaagaaacagagccgctattggacggctccgatcagatcttagccgttgtcgacgtcctcctagccgccgataagcgcgtaaacaaccaccacgactggtactccattctccaggtggatcgccgatccgacgaccacgatctgatcaagagatcgtaccgacggctggcgttgctcctccacccggacaagaacaaatacgccttcgccgagcacgccttcaagctcgtcgccgatgcatgggccgttctctccgacccggccaagaagccggtcttcgacaccgagctgggcctctacagcccagtcgatctcaccgccgccgcagcagcagcctccaatccgaacaagcttccggtgcggcgggggcagaatgctcgaaacgacggcgtttcggacgagcagcagcaaaatcaacagaggtcgagattatcgagcttctggacggcgtgtccttactgttatatactgtatgagtaccctagggtttatgagaattgctgtttgaggtgtcagaattgtaagagagggtttgaggccgttttggtcccgaatttgccgccattggtgcaaggccaggatgcctattactgttgctggggcttcttccccatggggtttgttggtggcagctccgccaatggaggaaagggaaaggcggctgccaccgcgccggccttcccctcttggatgcctccgattttcacaacgccgccgccgccacagaataaaacccctgagacttccagggcaccccctgtgaatgtgccgcccccacctgccccggtgcccgcggcggcagcgggtgatgtaatgttgaatttttcgggtgggaactcgaattcagggacagggactaatccaaagaagaggggacggccgcggaagttaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

397

Amino Acids

43.75

Weight (kDa)

9.41

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01710 AT2G01710
fragaria_vesca	FvH4_5g35420
malus_domestica	MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica	Prupe.1G531000_v2.0.a1
pyrus_communis	pycom08g16900 pycom15g34460
rosa_chinensis	RchiOBHm_Chr7g0236821
rosa_laevigata	RLG00000001059
rosa_multiflora	Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224800
rosa_rugosa	Rorug07G0299600
rosa_samantha	Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana	Rw7G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1084
AatII	GACGTC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	1084
AccB1I	GGYRCC	2 cut(s)	1048, 1084
AccBSI	CCGCTC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
AclWI	GGATC	2 cut(s)	417, 423
AcoI	YGGCCR	2 cut(s)	558, 1175
AcsI	RAATTY	3 cut(s)	850, 1117, 1138
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	3 cut(s)	398, 455, 776
AfiI	CCNNNNNNNGG	3 cut(s)	463, 481, 537
AgsI	TTSAA	2 cut(s)	520, 1117
AhdI	GACNNNNNGTC	1 cut(s)	747
AjnI	CCWGG	3 cut(s)	408, 873, 1043
AluBI	AGCT	7 cut(s)	247, 273, 523, 586, 649, 735, 930
AluI	AGCT	7 cut(s)	247, 273, 523, 586, 649, 735, 930
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	1031
AlwI	GGATC	2 cut(s)	417, 423
AoxI	GGCC	7 cut(s)	540, 558, 589, 834, 871, 972, 1175
ApeKI	GCWGC	9 cut(s)	270, 623, 626, 629, 700, 703, 927, 959, 1097
ApoI	RAATTY	3 cut(s)	850, 1117, 1138
AsiSI	GCGATCGC	1 cut(s)	159
AspA2I	CCTAGG	1 cut(s)	779
AspLEI	GCGC	4 cut(s)	279, 298, 375, 970
AspS9I	GGNCC	4 cut(s)	193, 540, 589, 844
AsuC2I	CCSGG	3 cut(s)	482, 557, 1082
AsuHPI	GGTGA	2 cut(s)	604, 1115
AvaII	GGWCC	2 cut(s)	193, 844
AvrII	CCTAGG	1 cut(s)	779
BaeGI	GKGCMC	2 cut(s)	1051, 1089
BanI	GGYRCC	2 cut(s)	1048, 1084
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	9 cut(s)	282, 635, 638, 641, 712, 715, 939, 946, 1109
BceAI	ACGGC	9 cut(s)	146, 326, 337, 476, 527, 700, 759, 821, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	3 cut(s)	410, 875, 1045
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	3 cut(s)	482, 557, 1082
BcoDI	GTCTC	1 cut(s)	1031
BfaI	CTAG	2 cut(s)	359, 780
BfmI	CTRYAG	2 cut(s)	251, 595
BfuAI	ACCTGC	1 cut(s)	1084
BglI	GCCNNNNNGGC	1 cut(s)	293
BglII	AGATCT	2 cut(s)	262, 333
BlnI	CCTAGG	1 cut(s)	779
Bme1390I	CCNGG	6 cut(s)	410, 482, 557, 875, 1045, 1082
Bme18I	GGWCC	2 cut(s)	193, 844
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmgT120I	GGNCC	4 cut(s)	193, 540, 589, 844
BmiI	GGNNCC	4 cut(s)	325, 846, 1050, 1086
BmrFI	CCNGG	6 cut(s)	410, 482, 557, 875, 1045, 1082
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	523, 868, 978
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	482, 557, 1082
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	6 cut(s)	779, 909, 1044, 1080, 1089, 1178
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 481, 537
Bse118I	RCCGGY	2 cut(s)	568, 970
Bse1I	ACTGG	2 cut(s)	398, 602
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	410, 875, 1045
BseDI	CCNNGG	6 cut(s)	779, 909, 1044, 1080, 1089, 1178
BseGI	GGATG	2 cut(s)	883, 993
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	463, 481, 537
BseMII	CTCAG	2 cut(s)	257, 1026
BseNI	ACTGG	2 cut(s)	398, 602
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	2 cut(s)	1051, 1089
BseX3I	CGGCCG	1 cut(s)	1175
BseXI	GCAGC	9 cut(s)	282, 635, 638, 641, 712, 715, 939, 946, 1109
BseYI	CCCAGC	2 cut(s)	586, 894
Bsh1236I	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
Bsh1285I	CGRYCG	2 cut(s)	159, 1178
BshFI	GGCC	7 cut(s)	542, 560, 591, 836, 873, 974, 1177
BshNI	GGYRCC	2 cut(s)	1048, 1084
BsiEI	CGRYCG	2 cut(s)	159, 1178
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	6 cut(s)	482, 557, 569, 653, 971, 1082
BslFI	GGGAC	4 cut(s)	830, 1159, 1165, 1185
BslI	CCNNNNNNNGG	3 cut(s)	463, 481, 537
BsmAI	GTCTC	1 cut(s)	1031
BsmFI	GGGAC	4 cut(s)	830, 1159, 1165, 1185
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	7 cut(s)	542, 560, 591, 836, 873, 974, 1177
Bsp1286I	GDGCHC	3 cut(s)	513, 1051, 1089
Bsp19I	CCATGG	1 cut(s)	909
BspANI	GGCC	7 cut(s)	542, 560, 591, 836, 873, 974, 1177
BspCNI	CTCAG	2 cut(s)	258, 1027
BspFNI	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
BspLI	GGNNCC	4 cut(s)	325, 846, 1050, 1086
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	2 cut(s)	417, 423
BspT107I	GGYRCC	2 cut(s)	1048, 1084
BsrBI	CCGCTC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	568, 970
BsrI	ACTGG	2 cut(s)	398, 602
BssAI	RCCGGY	2 cut(s)	568, 970
BssECI	CCNNGG	6 cut(s)	779, 909, 1044, 1080, 1089, 1178
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	779, 909
Bst2UI	CCWGG	3 cut(s)	410, 875, 1045
Bst4CI	ACNGT	3 cut(s)	758, 768, 890
Bst6I	CTCTTC	1 cut(s)	1160
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	5 cut(s)	275, 465, 513, 972, 1089
BstDEI	CTNAG	4 cut(s)	266, 337, 1035, 1191
BstDSI	CCRYGG	3 cut(s)	909, 1089, 1178
BstF5I	GGATG	2 cut(s)	883, 993
BstFNI	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
BstHHI	GCGC	4 cut(s)	279, 298, 375, 970
BstMAI	GTCTC	1 cut(s)	1031
BstMCI	CGRYCG	2 cut(s)	159, 1178
BstNI	CCWGG	3 cut(s)	410, 875, 1045
BstSCI	CCNGG	6 cut(s)	408, 480, 555, 873, 1043, 1080
BstSFI	CTRYAG	2 cut(s)	251, 595
BstSLI	GKGCMC	2 cut(s)	1051, 1089
BstUI	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
BstV1I	GCAGC	9 cut(s)	282, 635, 638, 641, 712, 715, 939, 946, 1109
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	262, 333
BstYI	RGATCY	2 cut(s)	262, 333
BstZI	CGGCCG	1 cut(s)	1175
BsuRI	GGCC	7 cut(s)	542, 560, 591, 836, 873, 974, 1177
BtgI	CCRYGG	3 cut(s)	909, 1089, 1178
BtsCI	GGATG	2 cut(s)	883, 993
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	5 cut(s)	275, 465, 513, 972, 1089
CfoI	GCGC	4 cut(s)	279, 298, 375, 970
Cfr10I	RCCGGY	2 cut(s)	568, 970
Cfr13I	GGNCC	4 cut(s)	193, 540, 589, 844
Cfr42I	CCGCGG	2 cut(s)	1092, 1181
Csp6I	GTAC	3 cut(s)	397, 454, 775
CviAII	CATG	2 cut(s)	537, 910
CviQI	GTAC	3 cut(s)	397, 454, 775
DdeI	CTNAG	4 cut(s)	266, 337, 1035, 1191
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	2 cut(s)	558, 1175
EagI	CGGCCG	1 cut(s)	1175
Eam1104I	CTCTTC	1 cut(s)	1160
Eam1105I	GACNNNNNGTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	1160
EciI	GGCGGA	1 cut(s)	922
EclXI	CGGCCG	1 cut(s)	1175
Eco130I	CCWWGG	2 cut(s)	779, 909
Eco47I	GGWCC	2 cut(s)	193, 844
Eco52I	CGGCCG	1 cut(s)	1175
EcoRI	GAATTC	1 cut(s)	1138
EcoRII	CCWGG	3 cut(s)	408, 873, 1043
EcoT14I	CCWWGG	2 cut(s)	779, 909
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	779, 909
FaeI	CATG	2 cut(s)	540, 913
FaiI	YATR	7 cut(s)	191, 538, 762, 764, 771, 789, 911
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	4 cut(s)	830, 1159, 1165, 1185
FatI	CATG	2 cut(s)	536, 909
FauI	CCCGC	3 cut(s)	654, 1093, 1096
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	348
FokI	GGATG	2 cut(s)	890, 1000
FspBI	CTAG	2 cut(s)	359, 780
GlaI	GCGC	4 cut(s)	278, 297, 374, 969
GsaI	CCCAGC	2 cut(s)	590, 898
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	7 cut(s)	542, 560, 591, 836, 873, 974, 1177
HapII	CCGG	6 cut(s)	482, 557, 569, 653, 971, 1082
HhaI	GCGC	4 cut(s)	279, 298, 375, 970
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	540, 913
Hin6I	GCGC	4 cut(s)	277, 296, 373, 968
HinP1I	GCGC	4 cut(s)	277, 296, 373, 968
HincII	GTYRAC	2 cut(s)	349, 1188
HindII	GTYRAC	2 cut(s)	349, 1188
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	1 cut(s)	234
HpaI	GTTAAC	1 cut(s)	1188
HpaII	CCGG	6 cut(s)	482, 557, 569, 653, 971, 1082
HphI	GGTGA	2 cut(s)	604, 1115
Hpy166II	GTNNAC	3 cut(s)	349, 379, 1188
Hpy188III	TCNNGA	4 cut(s)	445, 723, 739, 847
Hpy8I	GTNNAC	3 cut(s)	349, 379, 1188
Hpy99I	CGWCG	7 cut(s)	167, 170, 353, 431, 462, 530, 686
HpyAV	CCTTC	3 cut(s)	511, 526, 985
HpyCH4III	ACNGT	3 cut(s)	758, 768, 890
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	536, 868
HpyF3I	CTNAG	4 cut(s)	266, 337, 1035, 1191
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	540, 913
HspAI	GCGC	4 cut(s)	277, 296, 373, 968
KroI	GCCGGC	1 cut(s)	970
KroNI	GCCGGC	1 cut(s)	972
Ksp22I	TGATCA	1 cut(s)	441
KspAI	GTTAAC	1 cut(s)	1188
KspI	CCGCGG	2 cut(s)	1092, 1181
LmnI	GCTCC	4 cut(s)	252, 329, 477, 935
Lsp1109I	GCAGC	9 cut(s)	282, 635, 638, 641, 712, 715, 939, 946, 1109
LweI	GCATC	3 cut(s)	523, 868, 978
MaeI	CTAG	2 cut(s)	359, 780
MaeII	ACGT	1 cut(s)	351
MbiI	CCGCTC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	565, 895, 1177
MflI	RGATCY	2 cut(s)	262, 333
MhlI	GDGCHC	3 cut(s)	513, 1051, 1089
MluCI	AATT	7 cut(s)	75, 81, 793, 814, 850, 1117, 1138
MmeI	TCCRAC	2 cut(s)	450, 576
Mph1103I	ATGCAT	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	970
MseI	TTAA	1 cut(s)	1187
MspA1I	CMGCKG	3 cut(s)	1091, 1100, 1180
MspI	CCGG	6 cut(s)	482, 557, 569, 653, 971, 1082
MspR9I	CCNGG	6 cut(s)	410, 482, 557, 875, 1045, 1082
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	3 cut(s)	410, 875, 1045
MvnI	CGCG	6 cut(s)	277, 279, 375, 968, 1091, 1180
NaeI	GCCGGC	1 cut(s)	972
NciI	CCSGG	3 cut(s)	482, 557, 1082
NcoI	CCATGG	1 cut(s)	909
NgoMIV	GCCGGC	1 cut(s)	970
NlaIII	CATG	2 cut(s)	540, 913
NlaIV	GGNNCC	4 cut(s)	325, 846, 1050, 1086
NmeAIII	GCCGAG	3 cut(s)	244, 265, 532
NsiI	ATGCAT	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	1084
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 504, 728
PctI	GAATGC	1 cut(s)	676
PdiI	GCCGGC	1 cut(s)	972
PfeI	GAWTC	1 cut(s)	234
Ple19I	CGATCG	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	408, 873, 1043
PspFI	CCCAGC	2 cut(s)	586, 894
PspGI	CCWGG	3 cut(s)	408, 873, 1043
PspN4I	GGNNCC	4 cut(s)	325, 846, 1050, 1086
PspPI	GGNCC	4 cut(s)	193, 540, 589, 844
PsuI	RGATCY	2 cut(s)	262, 333
PvuI	CGATCG	1 cut(s)	159
RgaI	GCGATCGC	1 cut(s)	159
RsaI	GTAC	3 cut(s)	398, 455, 776
RsaNI	GTAC	3 cut(s)	397, 454, 775
SacII	CCGCGG	2 cut(s)	1092, 1181
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	1187
Sau96I	GGNCC	4 cut(s)	193, 540, 589, 844
ScrFI	CCNGG	6 cut(s)	410, 482, 557, 875, 1045, 1082
SduI	GDGCHC	3 cut(s)	513, 1051, 1089
SfaAI	GCGATCGC	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	523, 868, 978
SfcI	CTRYAG	2 cut(s)	251, 595
Sfr303I	CCGCGG	2 cut(s)	1092, 1181
SgfI	GCGATCGC	1 cut(s)	159
SgrBI	CCGCGG	2 cut(s)	1092, 1181
SinI	GGWCC	2 cut(s)	193, 844
Sse9I	AATT	7 cut(s)	75, 81, 793, 814, 850, 1117, 1138
SspMI	CTAG	2 cut(s)	359, 780
StyD4I	CCNGG	6 cut(s)	408, 480, 555, 873, 1043, 1080
StyI	CCWWGG	2 cut(s)	779, 909
TaaI	ACNGT	3 cut(s)	758, 768, 890
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	7 cut(s)	348, 576, 606, 676, 722, 731, 1136
TasI	AATT	7 cut(s)	75, 81, 793, 814, 850, 1117, 1138
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	1187
Tru9I	TTAA	1 cut(s)	1187
TseI	GCWGC	9 cut(s)	270, 623, 626, 629, 700, 703, 927, 959, 1097
VpaK11BI	GGWCC	2 cut(s)	193, 844
XapI	RAATTY	3 cut(s)	850, 1117, 1138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	2 cut(s)	359, 780
ZraI	GACGTC	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.