Rw7G037750

DnaJ domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
57252736 .. 57254297
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037750.1

Sequence Viewer

Length: 1005 bp
ATGGACCACAATCCAAACAGAGCCGAAGCCGAGCGGTTGCTCGGAATCGCCGAGAAGCTCCTACAGAACCGAGATCTGAGCAGCTCGCGCGACTTCGCCATTCTGGCGCAAGAAACAGAGCCGCTATTGGACGGCTCCGATCAGATCTTAGCCGTTGTCGACGTCCTCCTAGCCGCCGATAAGCGCGTAAACAACCACCACGACTGGTACTCCATTCTCCAGGTGGATCGCCGATCCGACGACCACGATCTGATCAAGAGATCGTACCGACGGCTGGCGTTGCTCCTCCACCCGGACAAGAACAAATACGCCTTCGCCGAGCACGCCTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTCTCCGACCCGGCCAAGAAGCCGGTCTTCGACACCGAGCTGGGCCTCTACAGCCCAGTCGATCTCACCGCCGCCGCAGCAGCAGCCTCCAATCCGAACAAGCTTCCGGTGCGGCGGGGGCAGAATGCTCGAAACGACGGCGTTTCGGACGAGCAGCAGCAAAATCAACAGAGGTCGAGATTATCGAGCTTCTGGACGGCGTGTCCTTACTGTTATATACTGTATGAGTACCCTAGGGTTTATGAGAATTGCTGTTTGAGGTGTCAGAATTGTAAGAGAGGCTTTGAGGCCGTTTTGGTCCCCAATTTGCCGCCATTGGTGCAAGGCCAGGATGCCTATTACTGCTGCTGGGGCTTCTTCCCCATGGGCTTTGTTGGTGGCAGCTCAGCCAATGGAGGAAAGGGAAAGGCGGCTGCCACCGCGCCGGCCTTCCCCTCTTGGATGCCTCCGATTTTCACAACGCCGCCGCCGCCACAGAATAAAACCCCTGAGACTTCCAGGGCACCCCCTGTGAATGTGCCGCCCCCACCTGCCCCCGTCCCCGCGGCGGCAACGGGCGATGTAATGTTGAATTTTTCGGGTGGGAACTCGAATTCAGGGACAGGGACTAATCCAAAGAAGAGGGGACGGCCGCGGAAGTTAACTTAG

Protein Analysis

334

Amino Acids

36.73

Weight (kDa)

8.71

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 130 5.9e-18 DnaJ domain
Zn_ribbon_20 PF23551 183 - 217 3.5e-08 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011428)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 859
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 159
AccII CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
AclWI GGATC 2 cut(s) 228, 234
AcoI YGGCCR 2 cut(s) 369, 986
AcsI RAATTY 2 cut(s) 928, 949
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 3 cut(s) 209, 266, 587
AfiI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 904
AgsI TTSAA 2 cut(s) 331, 928
AhdI GACNNNNNGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 219, 684, 854
AluBI AGCT 7 cut(s) 58, 84, 334, 397, 460, 546, 741
AluI AGCT 7 cut(s) 58, 84, 334, 397, 460, 546, 741
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 2 cut(s) 228, 234
AoxI GGCC 7 cut(s) 351, 369, 400, 645, 682, 783, 986
ApeKI GCWGC 9 cut(s) 81, 434, 437, 440, 511, 514, 702, 738, 770
ApoI RAATTY 2 cut(s) 928, 949
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 4 cut(s) 90, 109, 186, 781
AspS9I GGNCC 4 cut(s) 4, 351, 400, 655
AsuC2I CCSGG 2 cut(s) 293, 368
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 2 cut(s) 4, 655
AvrII CCTAGG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 9 cut(s) 93, 446, 449, 452, 523, 526, 689, 750, 757
BceAI ACGGC 8 cut(s) 137, 148, 287, 338, 511, 570, 632, 1001
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 3 cut(s) 221, 686, 856
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 2 cut(s) 293, 368
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 2 cut(s) 170, 591
BfmI CTRYAG 2 cut(s) 62, 406
BfuAI ACCTGC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 104
BglII AGATCT 2 cut(s) 73, 144
BlnI CCTAGG 1 cut(s) 590
BlpI GCTNAGC 1 cut(s) 742
Bme1390I CCNGG 5 cut(s) 221, 293, 368, 686, 856
Bme18I GGWCC 2 cut(s) 4, 655
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgT120I GGNCC 4 cut(s) 4, 351, 400, 655
BmiI GGNNCC 3 cut(s) 136, 657, 861
BmrFI CCNGG 5 cut(s) 221, 293, 368, 686, 856
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 3 cut(s) 334, 679, 789
BmuI ACTGGG 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 742
BpuMI CCSGG 2 cut(s) 293, 368
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 590, 720, 855, 900, 989
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 292, 348, 904
Bse118I RCCGGY 2 cut(s) 379, 781
Bse1I ACTGG 2 cut(s) 209, 413
BseBI CCWGG 3 cut(s) 221, 686, 856
BseDI CCNNGG 5 cut(s) 590, 720, 855, 900, 989
BseGI GGATG 2 cut(s) 694, 804
BseLI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 904
BseMII CTCAG 3 cut(s) 68, 756, 837
BseNI ACTGG 2 cut(s) 209, 413
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 862
BseX3I CGGCCG 1 cut(s) 986
BseXI GCAGC 9 cut(s) 93, 446, 449, 452, 523, 526, 689, 750, 757
BseYI CCCAGC 2 cut(s) 397, 705
Bsh1236I CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
Bsh1285I CGRYCG 1 cut(s) 989
BshFI GGCC 7 cut(s) 353, 371, 402, 647, 684, 785, 988
BshNI GGYRCC 1 cut(s) 859
BsiEI CGRYCG 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 5 cut(s) 293, 368, 380, 464, 782
BslFI GGGAC 5 cut(s) 641, 881, 970, 976, 996
BslI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 904
BsmAI GTCTC 1 cut(s) 842
BsmFI GGGAC 5 cut(s) 641, 881, 970, 976, 996
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 7 cut(s) 353, 371, 402, 647, 684, 785, 988
Bsp1286I GDGCHC 2 cut(s) 324, 862
Bsp143I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
Bsp1720I GCTNAGC 1 cut(s) 742
Bsp19I CCATGG 1 cut(s) 720
BspANI GGCC 7 cut(s) 353, 371, 402, 647, 684, 785, 988
BspCNI CTCAG 3 cut(s) 69, 755, 838
BspFNI CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
BspLI GGNNCC 3 cut(s) 136, 657, 861
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 2 cut(s) 228, 234
BspT107I GGYRCC 1 cut(s) 859
BsrBI CCGCTC 1 cut(s) 34
BsrFI RCCGGY 2 cut(s) 379, 781
BsrI ACTGG 2 cut(s) 209, 413
BssAI RCCGGY 2 cut(s) 379, 781
BssECI CCNNGG 5 cut(s) 590, 720, 855, 900, 989
BssMI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 590, 720
Bst2UI CCWGG 3 cut(s) 221, 686, 856
Bst4CI ACNGT 2 cut(s) 569, 579
Bst6I CTCTTC 1 cut(s) 971
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 86, 276, 324, 783
BstDEI CTNAG 5 cut(s) 77, 148, 742, 846, 1002
BstDSI CCRYGG 3 cut(s) 720, 900, 989
BstF5I GGATG 2 cut(s) 694, 804
BstFNI CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
BstHHI GCGC 4 cut(s) 90, 109, 186, 781
BstKTI GATC 9 cut(s) 76, 142, 147, 229, 236, 250, 255, 263, 421
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
BstMCI CGRYCG 1 cut(s) 989
BstNI CCWGG 3 cut(s) 221, 686, 856
BstSCI CCNGG 5 cut(s) 219, 291, 366, 684, 854
BstSFI CTRYAG 2 cut(s) 62, 406
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
BstV1I GCAGC 9 cut(s) 93, 446, 449, 452, 523, 526, 689, 750, 757
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 73, 144
BstYI RGATCY 2 cut(s) 73, 144
BstZI CGGCCG 1 cut(s) 986
BsuRI GGCC 7 cut(s) 353, 371, 402, 647, 684, 785, 988
BtgI CCRYGG 3 cut(s) 720, 900, 989
BtgZI GCGATG 1 cut(s) 930
BtsCI GGATG 2 cut(s) 694, 804
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 4 cut(s) 86, 276, 324, 783
CfoI GCGC 4 cut(s) 90, 109, 186, 781
Cfr10I RCCGGY 2 cut(s) 379, 781
Cfr13I GGNCC 4 cut(s) 4, 351, 400, 655
Cfr42I CCGCGG 2 cut(s) 903, 992
Csp6I GTAC 3 cut(s) 208, 265, 586
CviAII CATG 2 cut(s) 348, 721
CviQI GTAC 3 cut(s) 208, 265, 586
DdeI CTNAG 5 cut(s) 77, 148, 742, 846, 1002
DpnI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 262, 420
DpnII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
DriI GACNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 2 cut(s) 369, 986
EagI CGGCCG 1 cut(s) 986
Eam1104I CTCTTC 1 cut(s) 971
Eam1105I GACNNNNNGTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 971
EclXI CGGCCG 1 cut(s) 986
Eco130I CCWWGG 2 cut(s) 590, 720
Eco47I GGWCC 2 cut(s) 4, 655
Eco52I CGGCCG 1 cut(s) 986
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 3 cut(s) 219, 684, 854
EcoT14I CCWWGG 2 cut(s) 590, 720
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 590, 720
FaeI CATG 2 cut(s) 351, 724
FaiI YATR 6 cut(s) 349, 573, 575, 582, 600, 722
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 623, 655
FaqI GGGAC 5 cut(s) 641, 881, 970, 976, 996
FatI CATG 2 cut(s) 347, 720
FauI CCCGC 2 cut(s) 465, 907
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 159
FokI GGATG 2 cut(s) 701, 811
FspBI CTAG 2 cut(s) 170, 591
GlaI GCGC 4 cut(s) 89, 108, 185, 780
GsaI CCCAGC 2 cut(s) 401, 709
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 7 cut(s) 353, 371, 402, 647, 684, 785, 988
HapII CCGG 5 cut(s) 293, 368, 380, 464, 782
HhaI GCGC 4 cut(s) 90, 109, 186, 781
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 351, 724
Hin6I GCGC 4 cut(s) 88, 107, 184, 779
HinP1I GCGC 4 cut(s) 88, 107, 184, 779
HincII GTYRAC 2 cut(s) 160, 999
HindII GTYRAC 2 cut(s) 160, 999
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 45
HpaI GTTAAC 1 cut(s) 999
HpaII CCGG 5 cut(s) 293, 368, 380, 464, 782
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 160, 190, 999
Hpy188III TCNNGA 3 cut(s) 256, 534, 550
Hpy8I GTNNAC 3 cut(s) 160, 190, 999
Hpy99I CGWCG 5 cut(s) 164, 242, 273, 341, 497
HpyAV CCTTC 3 cut(s) 322, 337, 796
HpyCH4III ACNGT 2 cut(s) 569, 579
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 347, 679
HpyF3I CTNAG 5 cut(s) 77, 148, 742, 846, 1002
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 351, 724
HspAI GCGC 4 cut(s) 88, 107, 184, 779
KroI GCCGGC 1 cut(s) 781
KroNI GCCGGC 1 cut(s) 783
Ksp22I TGATCA 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 999
KspI CCGCGG 2 cut(s) 903, 992
Kzo9I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
LmnI GCTCC 3 cut(s) 63, 140, 288
Lsp1109I GCAGC 9 cut(s) 93, 446, 449, 452, 523, 526, 689, 750, 757
LweI GCATC 3 cut(s) 334, 679, 789
MaeI CTAG 2 cut(s) 170, 591
MaeII ACGT 1 cut(s) 162
MalI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 262, 420
MbiI CCGCTC 1 cut(s) 34
MboI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
MboII GAAGA 3 cut(s) 376, 706, 988
MflI RGATCY 2 cut(s) 73, 144
MhlI GDGCHC 2 cut(s) 324, 862
MluCI AATT 5 cut(s) 604, 625, 661, 928, 949
MmeI TCCRAC 2 cut(s) 261, 387
Mph1103I ATGCAT 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 781
MseI TTAA 1 cut(s) 998
MspA1I CMGCKG 2 cut(s) 902, 991
MspI CCGG 5 cut(s) 293, 368, 380, 464, 782
MspR9I CCNGG 5 cut(s) 221, 293, 368, 686, 856
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 3 cut(s) 221, 686, 856
MvnI CGCG 6 cut(s) 88, 90, 186, 779, 902, 991
NaeI GCCGGC 1 cut(s) 783
NciI CCSGG 2 cut(s) 293, 368
NcoI CCATGG 1 cut(s) 720
NdeII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
NgoMIV GCCGGC 1 cut(s) 781
NlaIII CATG 2 cut(s) 351, 724
NlaIV GGNNCC 3 cut(s) 136, 657, 861
NmeAIII GCCGAG 3 cut(s) 55, 76, 343
NsiI ATGCAT 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 895
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 315, 539
PctI GAATGC 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 219, 684, 854
PspFI CCCAGC 2 cut(s) 397, 705
PspGI CCWGG 3 cut(s) 219, 684, 854
PspN4I GGNNCC 3 cut(s) 136, 657, 861
PspPI GGNCC 4 cut(s) 4, 351, 400, 655
PsuI RGATCY 2 cut(s) 73, 144
RsaI GTAC 3 cut(s) 209, 266, 587
RsaNI GTAC 3 cut(s) 208, 265, 586
SacII CCGCGG 2 cut(s) 903, 992
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 998
Sau3AI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
Sau96I GGNCC 4 cut(s) 4, 351, 400, 655
ScrFI CCNGG 5 cut(s) 221, 293, 368, 686, 856
SduI GDGCHC 2 cut(s) 324, 862
SfaNI GCATC 3 cut(s) 334, 679, 789
SfcI CTRYAG 2 cut(s) 62, 406
Sfr303I CCGCGG 2 cut(s) 903, 992
SgrBI CCGCGG 2 cut(s) 903, 992
SinI GGWCC 2 cut(s) 4, 655
Sse9I AATT 5 cut(s) 604, 625, 661, 928, 949
SspMI CTAG 2 cut(s) 170, 591
StyD4I CCNGG 5 cut(s) 219, 291, 366, 684, 854
StyI CCWWGG 2 cut(s) 590, 720
TaaI ACNGT 2 cut(s) 569, 579
TaiI ACGT 1 cut(s) 165
TaqI TCGA 7 cut(s) 159, 387, 417, 487, 533, 542, 947
TasI AATT 5 cut(s) 604, 625, 661, 928, 949
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 998
Tru9I TTAA 1 cut(s) 998
TseI GCWGC 9 cut(s) 81, 434, 437, 440, 511, 514, 702, 738, 770
VpaK11BI GGWCC 2 cut(s) 4, 655
XapI RAATTY 2 cut(s) 928, 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 170, 591
ZraI GACGTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.