MD08G1196700.v1.1

DnaJ domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
25376069 .. 25378757
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1196700.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGATCCAAACAGGGTGGAAGCCGAGCGATTGCTCGGAATCGCCGAGAAGCTTCTACAGAGCCGGGATCTGAGCAGCTGCCGCGACTTCGCAATTCTAGCTCAGGAGACCGAGCCGCTGCTGGACGGCTCAGATCAGATCTTGGCGGTCGTTGATGTGCTCTTAGCCGCCGACAAACGCGTCAACAACCACCCTGACTGGTACGCTGTTCTCCAGTCCGATCGCCGATCCGATGACTTCGAACTCGTCAAGAAATCTTACCGACGGCTGGCGTTGCTCCTCCACCCGGACAAGAACAAGTACGCCTATGCGGAGCACGCGTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTGTCCGATCCGGCCAAGAAGCAAATTTACGACAACGAGCTGGGGCCGTTCAGCCGGATCGATCTCGGCGGGTCGAATTCGAACAAATTGCCGGTGCGGCGGGACAGCCGGGGCCGAAACGACGCCGGTGTGGGAAACGACGGCCAGCAGCAGCCGAGGTCGAGATTGTCGACTTTCTGGACGACGTGCCCGTACTGTTACGTGCTGTACGAGTACCCTAGGGTTTACGAGAGCTGCTGTTTAAGGTGTCAGAATTGTAAGCGAGGGTTCGAGGCGGTGGTTGTTCCGAATTTGCCGCCAATGGTGCAGGGACAAGACGCTTACTACTGCTGTTGGGGGTTTTTTCCAATGGGATTTGTTGGCGGCAGCGGCGCGAAGGGTAAGTCCACCGCCGCAGCCACCGCCGCCTTTCCCAACTGGATGCCACCTGTCTTTACAACCCCGCAGAGTAAAACTCCGGTGATTGCAACGACAGTGCCTACCTCGGTGCCCGTGGTGCCGAATTCGGGGGGAGTGGTGGATATTTCGGATGGGACCCCGGAATTGAGGCCTAATCCGACTCAGAAGAAGAGAGGACGACCCAAGAAGTACTGA

Protein Analysis

315

Amino Acids

34.88

Weight (kDa)

8.76

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 128 2.9e-17 DnaJ domain
Zn_ribbon_20 PF23551 176 - 210 7.2e-07 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011428)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 838, 847
AccI GTMKAC 1 cut(s) 521
AccII CGCG 4 cut(s) 84, 180, 320, 725
AclWI GGATC 5 cut(s) 12, 75, 222, 353, 416
AcoI YGGCCR 2 cut(s) 363, 493
AcsI RAATTY 4 cut(s) 375, 427, 640, 853
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 6 cut(s) 203, 302, 545, 560, 566, 941
AfiI CCNNNNNNNGG 4 cut(s) 268, 286, 342, 857
AflIII ACRYGT 2 cut(s) 178, 318
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 1 cut(s) 537
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 6 cut(s) 52, 78, 101, 328, 391, 585
AluI AGCT 6 cut(s) 52, 78, 101, 328, 391, 585
Alw21I GWGCWC 2 cut(s) 162, 318
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 5 cut(s) 12, 75, 222, 353, 416
AoxI GGCC 6 cut(s) 345, 363, 395, 463, 493, 899
ApeKI GCWGC 8 cut(s) 75, 78, 118, 499, 502, 585, 717, 746
ApoI RAATTY 4 cut(s) 375, 427, 640, 853
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspA2I CCTAGG 1 cut(s) 569
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 4 cut(s) 345, 395, 463, 885
AsuC2I CCSGG 4 cut(s) 65, 287, 461, 890
AsuHPI GGTGA 1 cut(s) 823
AsuII TTCGAA 2 cut(s) 240, 431
AvaII GGWCC 1 cut(s) 885
AvrII CCTAGG 1 cut(s) 569
BaeGI GKGCMC 2 cut(s) 542, 843
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 838, 847
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
Bbv12I GWGCWC 2 cut(s) 162, 318
BbvI GCAGC 8 cut(s) 65, 87, 105, 511, 514, 572, 729, 758
BccI CCATC 1 cut(s) 875
BceAI ACGGC 5 cut(s) 142, 281, 332, 382, 508
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BcnI CCSGG 4 cut(s) 65, 287, 461, 890
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 98, 570
BfmI CTRYAG 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 448
BglII AGATCT 1 cut(s) 138
BlnI CCTAGG 1 cut(s) 569
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 4 cut(s) 65, 287, 461, 890
Bme18I GGWCC 1 cut(s) 885
BmgBI CACGTC 1 cut(s) 537
BmgT120I GGNCC 4 cut(s) 345, 395, 463, 885
BmiI GGNNCC 7 cut(s) 6, 396, 464, 840, 849, 886, 887
BmrFI CCNGG 4 cut(s) 65, 287, 461, 890
BmsI GCATC 2 cut(s) 328, 762
BplI GAGNNNNNCTC 2 cut(s) 790, 822
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 2 cut(s) 240, 431
BpuMI CCSGG 4 cut(s) 65, 287, 461, 890
Bsa29I ATCGAT 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 553
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 6 cut(s) 460, 506, 569, 834, 843, 888
BsaWI WCCGGW 1 cut(s) 808
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 286, 342, 857
Bse118I RCCGGY 2 cut(s) 442, 476
Bse1I ACTGG 3 cut(s) 203, 214, 773
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 6 cut(s) 460, 506, 569, 834, 843, 888
BseGI GGATG 2 cut(s) 777, 886
BseLI CCNNNNNNNGG 4 cut(s) 268, 286, 342, 857
BseMII CTCAG 4 cut(s) 62, 116, 144, 926
BseNI ACTGG 3 cut(s) 203, 214, 773
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 2 cut(s) 542, 843
BseXI GCAGC 8 cut(s) 65, 87, 105, 511, 514, 572, 729, 758
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 677
Bsh1236I CGCG 4 cut(s) 84, 180, 320, 725
Bsh1285I CGRYCG 2 cut(s) 150, 223
BshFI GGCC 6 cut(s) 347, 365, 397, 465, 495, 901
BshNI GGYRCC 2 cut(s) 838, 847
BshVI ATCGAT 1 cut(s) 411
BsiEI CGRYCG 2 cut(s) 150, 223
BsiHKAI GWGCWC 2 cut(s) 162, 318
BsiSI CCGG 9 cut(s) 64, 287, 362, 406, 443, 460, 477, 809, 890
BslFI GGGAC 3 cut(s) 467, 675, 898
BslI CCNNNNNNNGG 4 cut(s) 268, 286, 342, 857
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 3 cut(s) 467, 675, 898
BsnI GGCC 6 cut(s) 347, 365, 397, 465, 495, 901
Bso31I GGTCTC 1 cut(s) 101
Bsp119I TTCGAA 2 cut(s) 240, 431
Bsp1286I GDGCHC 4 cut(s) 162, 318, 542, 843
Bsp143I GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
BspANI GGCC 6 cut(s) 347, 365, 397, 465, 495, 901
BspCNI CTCAG 4 cut(s) 63, 115, 143, 925
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 4 cut(s) 84, 180, 320, 725
BspLI GGNNCC 7 cut(s) 6, 396, 464, 840, 849, 886, 887
BspPI GGATC 5 cut(s) 12, 75, 222, 353, 416
BspT104I TTCGAA 2 cut(s) 240, 431
BspT107I GGYRCC 2 cut(s) 838, 847
BspTNI GGTCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 442, 476
BsrI ACTGG 3 cut(s) 203, 214, 773
BssAI RCCGGY 2 cut(s) 442, 476
BssECI CCNNGG 6 cut(s) 460, 506, 569, 834, 843, 888
BssMI GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 548, 826
Bst6I CTCTTC 1 cut(s) 914
BstACI GRCGYC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 553
BstBI TTCGAA 2 cut(s) 240, 431
BstC8I GCNNGC 3 cut(s) 270, 318, 497
BstDEI CTNAG 5 cut(s) 71, 102, 130, 163, 912
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 2 cut(s) 777, 886
BstFNI CGCG 4 cut(s) 84, 180, 320, 725
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 9 cut(s) 7, 70, 136, 141, 223, 230, 361, 411, 415
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
BstMCI CGRYCG 2 cut(s) 150, 223
BstSCI CCNGG 4 cut(s) 63, 285, 459, 888
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 2 cut(s) 542, 843
BstUI CGCG 4 cut(s) 84, 180, 320, 725
BstV1I GCAGC 8 cut(s) 65, 87, 105, 511, 514, 572, 729, 758
BstX2I RGATCY 3 cut(s) 4, 67, 138
BstYI RGATCY 3 cut(s) 4, 67, 138
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 6 cut(s) 347, 365, 397, 465, 495, 901
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 843
BtrI CACGTC 1 cut(s) 537
BtsCI GGATG 2 cut(s) 777, 886
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 3 cut(s) 270, 318, 497
CfoI GCGC 1 cut(s) 725
Cfr10I RCCGGY 2 cut(s) 442, 476
Cfr13I GGNCC 4 cut(s) 345, 395, 463, 885
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 3 cut(s) 169, 482, 677
Csp6I GTAC 6 cut(s) 202, 301, 544, 559, 565, 940
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 1 cut(s) 342
CviQI GTAC 6 cut(s) 202, 301, 544, 559, 565, 940
DdeI CTNAG 5 cut(s) 71, 102, 130, 163, 912
DpnI GATC 9 cut(s) 6, 69, 135, 140, 222, 229, 360, 410, 414
DpnII GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 363, 493
Eam1104I CTCTTC 1 cut(s) 914
EarI CTCTTC 1 cut(s) 914
Eco130I CCWWGG 1 cut(s) 569
Eco147I AGGCCT 1 cut(s) 901
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 885
EcoO109I RGGNCCY 1 cut(s) 885
EcoRI GAATTC 2 cut(s) 427, 853
EcoT14I CCWWGG 1 cut(s) 569
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 569
FaeI CATG 1 cut(s) 345
FaiI YATR 2 cut(s) 309, 343
FaqI GGGAC 3 cut(s) 467, 675, 898
FatI CATG 1 cut(s) 341
FauI CCCGC 3 cut(s) 413, 444, 801
FblI GTMKAC 1 cut(s) 521
FokI GGATG 2 cut(s) 784, 893
FspBI CTAG 2 cut(s) 98, 570
GlaI GCGC 1 cut(s) 724
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 6 cut(s) 347, 365, 397, 465, 495, 901
HapII CCGG 9 cut(s) 64, 287, 362, 406, 443, 460, 477, 809, 890
HgaI GACGC 3 cut(s) 169, 482, 677
HhaI GCGC 1 cut(s) 725
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HincII GTYRAC 2 cut(s) 184, 522
HindII GTYRAC 2 cut(s) 184, 522
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 2 cut(s) 39, 910
HpaII CCGG 9 cut(s) 64, 287, 362, 406, 443, 460, 477, 809, 890
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 4 cut(s) 184, 522, 577, 738
Hpy188III TCNNGA 4 cut(s) 104, 250, 513, 529
Hpy8I GTNNAC 4 cut(s) 184, 522, 577, 738
Hpy99I CGWCG 5 cut(s) 267, 335, 476, 494, 538
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 548, 826
HpyCH4IV ACGT 2 cut(s) 536, 552
HpyCH4V TGCA 3 cut(s) 341, 658, 818
HpyF3I CTNAG 5 cut(s) 71, 102, 130, 163, 912
HpySE526I ACGT 2 cut(s) 536, 552
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 723
KflI GGGWCCC 1 cut(s) 885
Kzo9I GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
LmnI GCTCC 2 cut(s) 282, 313
Lsp1109I GCAGC 8 cut(s) 65, 87, 105, 511, 514, 572, 729, 758
LweI GCATC 2 cut(s) 328, 762
MaeI CTAG 2 cut(s) 98, 570
MaeII ACGT 2 cut(s) 536, 552
MaeIII GTNAC 1 cut(s) 548
MalI GATC 9 cut(s) 6, 69, 135, 140, 222, 229, 360, 410, 414
MboI GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
MboII GAAGA 2 cut(s) 928, 931
MflI RGATCY 3 cut(s) 4, 67, 138
MhlI GDGCHC 4 cut(s) 162, 318, 542, 843
MluCI AATT 8 cut(s) 93, 375, 427, 437, 604, 640, 853, 893
MluI ACGCGT 2 cut(s) 178, 318
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 1 cut(s) 932
MnlI CCTC 7 cut(s) 290, 501, 608, 616, 844, 891, 917
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 1 cut(s) 593
MspA1I CMGCKG 3 cut(s) 78, 118, 720
MspI CCGG 9 cut(s) 64, 287, 362, 406, 443, 460, 477, 809, 890
MspR9I CCNGG 4 cut(s) 65, 287, 461, 890
MvnI CGCG 4 cut(s) 84, 180, 320, 725
NciI CCSGG 4 cut(s) 65, 287, 461, 890
NdeII GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 7 cut(s) 6, 396, 464, 840, 849, 886, 887
NmeAIII GCCGAG 4 cut(s) 49, 70, 396, 531
NsiI ATGCAT 1 cut(s) 343
NspV TTCGAA 2 cut(s) 240, 431
PceI AGGCCT 1 cut(s) 901
PcsI WCGNNNNNNNCGW 4 cut(s) 42, 518, 539, 558
PfeI GAWTC 1 cut(s) 39
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
Ppu21I YACGTR 1 cut(s) 553
PpuMI RGGWCCY 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 885
PspFI CCCAGC 1 cut(s) 391
PspN4I GGNNCC 7 cut(s) 6, 396, 464, 840, 849, 886, 887
PspPI GGNCC 4 cut(s) 345, 395, 463, 885
PspPPI RGGWCCY 1 cut(s) 885
PsuI RGATCY 3 cut(s) 4, 67, 138
PvuI CGATCG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 6 cut(s) 203, 302, 545, 560, 566, 941
RsaNI GTAC 6 cut(s) 202, 301, 544, 559, 565, 940
SalI GTCGAC 1 cut(s) 520
SaqAI TTAA 1 cut(s) 593
Sau3AI GATC 9 cut(s) 4, 67, 133, 138, 220, 227, 358, 408, 412
Sau96I GGNCC 4 cut(s) 345, 395, 463, 885
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 4 cut(s) 65, 287, 461, 890
SduI GDGCHC 4 cut(s) 162, 318, 542, 843
SfaNI GCATC 2 cut(s) 328, 762
SfcI CTRYAG 1 cut(s) 56
SfuI TTCGAA 2 cut(s) 240, 431
SgrAI CRCCGGYG 1 cut(s) 476
SinI GGWCC 1 cut(s) 885
Sse9I AATT 8 cut(s) 93, 375, 427, 437, 604, 640, 853, 893
SseBI AGGCCT 1 cut(s) 901
SspMI CTAG 2 cut(s) 98, 570
StuI AGGCCT 1 cut(s) 901
StyD4I CCNGG 4 cut(s) 63, 285, 459, 888
StyI CCWWGG 1 cut(s) 569
TaaI ACNGT 2 cut(s) 548, 826
TaiI ACGT 2 cut(s) 539, 555
TaqI TCGA 7 cut(s) 240, 411, 425, 431, 512, 521, 621
TaqII GACCGA 1 cut(s) 125
TasI AATT 8 cut(s) 93, 375, 427, 437, 604, 640, 853, 893
TatI WGTACW 1 cut(s) 939
TauI GCSGC 9 cut(s) 84, 118, 170, 451, 649, 717, 723, 746, 758
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 1 cut(s) 831
TseI GCWGC 8 cut(s) 75, 78, 118, 499, 502, 585, 717, 746
TspRI CASTG 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 885
XapI RAATTY 4 cut(s) 375, 427, 640, 853
XmaJI CCTAGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 2 cut(s) 98, 570
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.