Rroxscaffold_3G00224800

DnaJ domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
8046687 .. 8047693
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224800.1

Sequence Viewer

Length: 981 bp
ATGGACCACAATCCGAACAGAGCCGAAGCCGAGCGGTTACTTGGAATCGCCGAGAAGCTCCTACAGAACCGAGATCTGAGCAGCTCGCGCGACTTCGCCATTCTGGCGCAAGAAACAGAGCCGCTATTGGACGGCTCGGATCAGATCTTAGCCGTCGTCGACGTCCTCCTAGCCGCCGATAAGCGCGTAAACAACCACCACGACTGGTACTCCATTCTCCAGGTGGATCGCCGATCCGACGACCACGATCTGATCAAGAGATCGTACCGACGGCTGGCGTTGCTCCTCCACCCGGACAAGAACAAATACGCCTTCGCCGAGCACGCCTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTCTCCGACCCGGCCAAGAAGCCGGTCTTCGACACCGAGCTGGGCCTCTACAGCCCAGTCGATCTCACCGCCGCCGCTGCAGCAGCAGCAGCCTCCAATCCGAACAAGCTTCCGGTGCGGCGGGGCAGAATGCTCGAAACGACGGCGTTTCGGATGAGCAGCAGCAAAATCAACAGAGGTCGAGATTATCGAGCTTCTGGACGGCGTTACCCTAGGGTCTATGAGAATTGCTGTTTGAGGTGTCAGAATTGTAAGAGAGGGTTTGAGGCCGTTTTGGTCCCGAATTTGCCGCCAATGGTGCAAGGCCAGGATGCCTATTACTGTTGCTGGGGCTTCTTCCCCATGGGGTTTGTTGGTGGCGGCTCTGCCAGTGGAGGAAAGGGAAAGGCGGCTGCCACCGCGCCGGCCTTCCCCACTTGGATGCCACCGATTTTCACAACGCCGCCGCCGCAGAATAAAACCCCTGAGACTTCCAGGGCACCCCCTGTAACTGTGCCGCCGCCGCCTGCCCCAGTGCCGGTGGCGGCAACGGGTGATGGAATGCTGAATTTTTCGGGTGGGAACTCGAGTTCAGGGACAGGGACTAATCCAAAGAAGAGGGGACGGCCGCGGAAGTTAACTTAG

Protein Analysis

326

Amino Acids

35.6

Weight (kDa)

9.51

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 130 5.7e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011428)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 835
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 159
AccII CGCG 5 cut(s) 88, 90, 186, 758, 967
AclWI GGATC 3 cut(s) 147, 228, 234
AcoI YGGCCR 2 cut(s) 369, 962
AcsI RAATTY 2 cut(s) 640, 904
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 209, 266
AfiI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 874
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 3 cut(s) 219, 663, 830
AloI GAACNNNNNNTCC 2 cut(s) 910, 942
AluBI AGCT 6 cut(s) 58, 84, 334, 397, 466, 551
AluI AGCT 6 cut(s) 58, 84, 334, 397, 466, 551
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 3 cut(s) 147, 228, 234
Ama87I CYCGRG 1 cut(s) 922
AoxI GGCC 7 cut(s) 351, 369, 400, 624, 661, 762, 962
ApeKI GCWGC 9 cut(s) 81, 434, 437, 440, 443, 446, 516, 519, 749
ApoI RAATTY 2 cut(s) 640, 904
AspA2I CCTAGG 1 cut(s) 569
AspLEI GCGC 4 cut(s) 90, 109, 186, 760
AspS9I GGNCC 4 cut(s) 4, 351, 400, 634
AsuC2I CCSGG 2 cut(s) 293, 368
AsuHPI GGTGA 2 cut(s) 415, 902
AvaI CYCGRG 1 cut(s) 922
AvaII GGWCC 2 cut(s) 4, 634
AvrII CCTAGG 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 835
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 9 cut(s) 93, 421, 449, 452, 455, 458, 528, 531, 736
BccI CCATC 1 cut(s) 887
BceAI ACGGC 8 cut(s) 137, 148, 287, 338, 516, 575, 611, 977
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 3 cut(s) 221, 665, 832
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 2 cut(s) 293, 368
BcoDI GTCTC 1 cut(s) 818
BfaI CTAG 2 cut(s) 170, 570
BfmI CTRYAG 3 cut(s) 62, 406, 435
BglI GCCNNNNNGGC 1 cut(s) 104
BglII AGATCT 2 cut(s) 73, 144
BlnI CCTAGG 1 cut(s) 569
Bme1390I CCNGG 5 cut(s) 221, 293, 368, 665, 832
Bme18I GGWCC 2 cut(s) 4, 634
BmeT110I CYCGRG 1 cut(s) 922
BmgT120I GGNCC 4 cut(s) 4, 351, 400, 634
BmiI GGNNCC 2 cut(s) 636, 837
BmrFI CCNGG 5 cut(s) 221, 293, 368, 665, 832
BmrI ACTGGG 2 cut(s) 407, 863
BmsI GCATC 3 cut(s) 334, 658, 768
BmuI ACTGGG 2 cut(s) 407, 863
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 293, 368
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 569, 699, 831, 965
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 292, 348, 874
Bse118I RCCGGY 3 cut(s) 379, 760, 874
Bse1I ACTGG 4 cut(s) 209, 413, 726, 869
BseBI CCWGG 3 cut(s) 221, 665, 832
BseDI CCNNGG 4 cut(s) 569, 699, 831, 965
BseGI GGATG 3 cut(s) 516, 673, 783
BseLI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 874
BseMII CTCAG 2 cut(s) 68, 813
BseNI ACTGG 4 cut(s) 209, 413, 726, 869
BseRI GAGGAG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 838
BseX3I CGGCCG 1 cut(s) 962
BseXI GCAGC 9 cut(s) 93, 421, 449, 452, 455, 458, 528, 531, 736
BseYI CCCAGC 2 cut(s) 397, 684
Bsh1236I CGCG 5 cut(s) 88, 90, 186, 758, 967
Bsh1285I CGRYCG 1 cut(s) 965
BshFI GGCC 7 cut(s) 353, 371, 402, 626, 663, 764, 964
BshNI GGYRCC 1 cut(s) 835
BsiEI CGRYCG 1 cut(s) 965
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 922
BsiSI CCGG 6 cut(s) 293, 368, 380, 470, 761, 875
BslFI GGGAC 4 cut(s) 620, 946, 952, 972
BslI CCNNNNNNNGG 4 cut(s) 274, 292, 348, 874
BsmAI GTCTC 1 cut(s) 818
BsmFI GGGAC 4 cut(s) 620, 946, 952, 972
BsmI GAATGC 2 cut(s) 492, 903
BsnI GGCC 7 cut(s) 353, 371, 402, 626, 663, 764, 964
BsoBI CYCGRG 1 cut(s) 922
Bsp1286I GDGCHC 2 cut(s) 324, 838
Bsp143I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
Bsp19I CCATGG 1 cut(s) 699
BspANI GGCC 7 cut(s) 353, 371, 402, 626, 663, 764, 964
BspCNI CTCAG 2 cut(s) 69, 814
BspFNI CGCG 5 cut(s) 88, 90, 186, 758, 967
BspLI GGNNCC 2 cut(s) 636, 837
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 3 cut(s) 147, 228, 234
BspT107I GGYRCC 1 cut(s) 835
BsrBI CCGCTC 1 cut(s) 34
BsrFI RCCGGY 3 cut(s) 379, 760, 874
BsrI ACTGG 4 cut(s) 209, 413, 726, 869
BssAI RCCGGY 3 cut(s) 379, 760, 874
BssECI CCNNGG 4 cut(s) 569, 699, 831, 965
BssMI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 569, 699
Bst2UI CCWGG 3 cut(s) 221, 665, 832
Bst4CI ACNGT 2 cut(s) 680, 850
Bst6I CTCTTC 1 cut(s) 947
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 5 cut(s) 86, 276, 324, 762, 864
BstDEI CTNAG 4 cut(s) 77, 148, 822, 978
BstDSI CCRYGG 2 cut(s) 699, 965
BstF5I GGATG 3 cut(s) 516, 673, 783
BstFNI CGCG 5 cut(s) 88, 90, 186, 758, 967
BstHHI GCGC 4 cut(s) 90, 109, 186, 760
BstKTI GATC 9 cut(s) 76, 142, 147, 229, 236, 250, 255, 263, 421
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
BstMCI CGRYCG 1 cut(s) 965
BstNI CCWGG 3 cut(s) 221, 665, 832
BstSCI CCNGG 5 cut(s) 219, 291, 366, 663, 830
BstSFI CTRYAG 3 cut(s) 62, 406, 435
BstSLI GKGCMC 1 cut(s) 838
BstUI CGCG 5 cut(s) 88, 90, 186, 758, 967
BstV1I GCAGC 9 cut(s) 93, 421, 449, 452, 455, 458, 528, 531, 736
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 73, 144
BstYI RGATCY 2 cut(s) 73, 144
BstZI CGGCCG 1 cut(s) 962
BsuRI GGCC 7 cut(s) 353, 371, 402, 626, 663, 764, 964
BtgI CCRYGG 2 cut(s) 699, 965
BtsCI GGATG 3 cut(s) 516, 673, 783
BtsIMutI CAGTG 2 cut(s) 733, 876
Cac8I GCNNGC 5 cut(s) 86, 276, 324, 762, 864
CfoI GCGC 4 cut(s) 90, 109, 186, 760
Cfr10I RCCGGY 3 cut(s) 379, 760, 874
Cfr13I GGNCC 4 cut(s) 4, 351, 400, 634
Cfr42I CCGCGG 1 cut(s) 968
Csp6I GTAC 2 cut(s) 208, 265
CviAII CATG 2 cut(s) 348, 700
CviQI GTAC 2 cut(s) 208, 265
DdeI CTNAG 4 cut(s) 77, 148, 822, 978
DpnI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 262, 420
DpnII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
EaeI YGGCCR 2 cut(s) 369, 962
EagI CGGCCG 1 cut(s) 962
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
EclXI CGGCCG 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 569, 699
Eco47I GGWCC 2 cut(s) 4, 634
Eco52I CGGCCG 1 cut(s) 962
Eco88I CYCGRG 1 cut(s) 922
EcoRII CCWGG 3 cut(s) 219, 663, 830
EcoT14I CCWWGG 2 cut(s) 569, 699
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 569, 699
FaeI CATG 2 cut(s) 351, 703
FaiI YATR 3 cut(s) 349, 579, 701
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 4 cut(s) 620, 946, 952, 972
FatI CATG 2 cut(s) 347, 699
FauI CCCGC 1 cut(s) 471
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 159
FokI GGATG 3 cut(s) 523, 680, 790
FspBI CTAG 2 cut(s) 170, 570
GlaI GCGC 4 cut(s) 89, 108, 185, 759
GsaI CCCAGC 2 cut(s) 401, 688
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 7 cut(s) 353, 371, 402, 626, 663, 764, 964
HapII CCGG 6 cut(s) 293, 368, 380, 470, 761, 875
HhaI GCGC 4 cut(s) 90, 109, 186, 760
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 351, 703
Hin6I GCGC 4 cut(s) 88, 107, 184, 758
HinP1I GCGC 4 cut(s) 88, 107, 184, 758
HincII GTYRAC 2 cut(s) 160, 975
HindII GTYRAC 2 cut(s) 160, 975
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 45
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 6 cut(s) 293, 368, 380, 470, 761, 875
HphI GGTGA 2 cut(s) 415, 902
Hpy166II GTNNAC 3 cut(s) 160, 190, 975
Hpy188III TCNNGA 4 cut(s) 256, 539, 555, 637
Hpy8I GTNNAC 3 cut(s) 160, 190, 975
Hpy99I CGWCG 7 cut(s) 158, 161, 164, 242, 273, 341, 502
HpyAV CCTTC 3 cut(s) 322, 337, 775
HpyCH4III ACNGT 2 cut(s) 680, 850
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 347, 437, 658
HpyF3I CTNAG 4 cut(s) 77, 148, 822, 978
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 351, 703
HspAI GCGC 4 cut(s) 88, 107, 184, 758
KroI GCCGGC 1 cut(s) 760
KroNI GCCGGC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 975
KspI CCGCGG 1 cut(s) 968
Kzo9I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
LmnI GCTCC 2 cut(s) 63, 288
Lsp1109I GCAGC 9 cut(s) 93, 421, 449, 452, 455, 458, 528, 531, 736
LweI GCATC 3 cut(s) 334, 658, 768
MaeI CTAG 2 cut(s) 170, 570
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 36, 563, 844
MalI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 262, 420
MbiI CCGCTC 1 cut(s) 34
MboI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
MboII GAAGA 3 cut(s) 376, 685, 964
MflI RGATCY 2 cut(s) 73, 144
MhlI GDGCHC 2 cut(s) 324, 838
MluCI AATT 4 cut(s) 583, 604, 640, 904
MmeI TCCRAC 2 cut(s) 261, 387
Mph1103I ATGCAT 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 760
MseI TTAA 1 cut(s) 974
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 2 cut(s) 434, 967
MspI CCGG 6 cut(s) 293, 368, 380, 470, 761, 875
MspR9I CCNGG 5 cut(s) 221, 293, 368, 665, 832
Mva1269I GAATGC 2 cut(s) 492, 903
MvaI CCWGG 3 cut(s) 221, 665, 832
MvnI CGCG 5 cut(s) 88, 90, 186, 758, 967
NaeI GCCGGC 1 cut(s) 762
NciI CCSGG 2 cut(s) 293, 368
NcoI CCATGG 1 cut(s) 699
NdeII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
NgoMIV GCCGGC 1 cut(s) 760
NlaIII CATG 2 cut(s) 351, 703
NlaIV GGNNCC 2 cut(s) 636, 837
NmeAIII GCCGAG 3 cut(s) 55, 76, 343
NsiI ATGCAT 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 922
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 544
PctI GAATGC 2 cut(s) 492, 903
PdiI GCCGGC 1 cut(s) 762
PfeI GAWTC 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 219, 663, 830
PspFI CCCAGC 2 cut(s) 397, 684
PspGI CCWGG 3 cut(s) 219, 663, 830
PspN4I GGNNCC 2 cut(s) 636, 837
PspPI GGNCC 4 cut(s) 4, 351, 400, 634
PspXI VCTCGAGB 1 cut(s) 922
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 73, 144
RsaI GTAC 2 cut(s) 209, 266
RsaNI GTAC 2 cut(s) 208, 265
RseI CAYNNNNRTG 1 cut(s) 776
SacII CCGCGG 1 cut(s) 968
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 974
Sau3AI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 260, 418
Sau96I GGNCC 4 cut(s) 4, 351, 400, 634
ScrFI CCNGG 5 cut(s) 221, 293, 368, 665, 832
SduI GDGCHC 2 cut(s) 324, 838
SfaNI GCATC 3 cut(s) 334, 658, 768
SfcI CTRYAG 3 cut(s) 62, 406, 435
Sfr274I CTCGAG 1 cut(s) 922
Sfr303I CCGCGG 1 cut(s) 968
SgrBI CCGCGG 1 cut(s) 968
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 2 cut(s) 4, 634
SlaI CTCGAG 1 cut(s) 922
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 4 cut(s) 583, 604, 640, 904
SspMI CTAG 2 cut(s) 170, 570
StyD4I CCNGG 5 cut(s) 219, 291, 366, 663, 830
StyI CCWWGG 2 cut(s) 569, 699
TaaI ACNGT 2 cut(s) 680, 850
TaiI ACGT 1 cut(s) 165
TaqI TCGA 7 cut(s) 159, 387, 417, 492, 538, 547, 923
TasI AATT 4 cut(s) 583, 604, 640, 904
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 2 cut(s) 733, 876
TseI GCWGC 9 cut(s) 81, 434, 437, 440, 443, 446, 516, 519, 749
TspRI CASTG 2 cut(s) 733, 876
VpaK11BI GGWCC 2 cut(s) 4, 634
XapI RAATTY 2 cut(s) 640, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 922
XmaJI CCTAGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 170, 570
ZraI GACGTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.