Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011428

Physical Location & Seq

Genomic Coordinates Reverse (-)

17003934 .. 17005767

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATCCAAACAGGGCGGAAGCCGAGCGATTGCTCGGAATCGCCGAGAAACTTCTACAGAGCCGGGATCTGAGCAGCTGCCGCGACTTCGCAATTCTAGCTCAGGAGACCGAGCCGCTGCTGGACGAAGGGGGAGAAAGAGAGAGCTCAGATCAGATCTTGGCCGTCGTCGATGTGCTCTTAGCCGCCGACAAACGCGTCAACAACCACCCTGACTGGTACGCTGTTCTCCAGTCCGATCGCCGATCCGACGACTTCGAACTCGTCAAGAAATCTTACAGACGGCTGGCGTTGCTCCTCCACCCGGACAAGAACAAGTACGCCTATGCGGAGCACGCGTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTGTCCGATCCGGCCAAGAAGCAAATTTACGACAACGAGCTGGGGCCGTTCAGCCGGATCGATCTCGGCGCGTCGAATTCGAACAAATTGCCGGTGCGGCGGGACAGCCGGGGCCGAAACGACGCCGGTGTGGGAAACGACGGCCAGCAGCAGCCGAGGTCGAGATTGTCGACTTTCTGGACGACGTGCCCGTACTGTTACGTGCTGTACGAGTACCCTAGGGTTTATGAGAGTTGCTGTTTGAGGTGTCAGAATTGTAAGCGAGGGTTCGAGGCGGTGGTTGTTCCGAATTTGCCGCCAATGGTGCAGGGACAAGACGCTTACTACTGCTGTTGGGGGTTTTTCCCAATGGGATTTGTTGGCGGCAGCGGCGCGAAGGGTAAGTCCACCGCCGCAGCCACTGCCGCCTTTCCTAACTGGATGCCACCTGTCTTTACAACTCCGCAGAGTAAAACTCCGGTGACTACAACGACAGTGCCTACCTCGGTGCCCGTGGTGCCGAATTCGGGGGGAGTGGAAAACAGGGAGATTAATAGGTTAAAACATAATTTTGGTCACATTGTTATGGCCGGAATCACGCTTGATCATTTTTGTTTTGTTGTTACCAATTTTGTCATTGTAATTGACTCCGTTAGCAATTTATGTTCAACTTTGAACTTATGTCTGTTGAATTTGAAAATAGAATATAAGATTAACAAATTAAAACATTCAACTAGAAAGGAAAGAACTTTGAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

370

Amino Acids

41.28

Weight (kDa)

8.52

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01710 AT2G01710
fragaria_vesca	FvH4_5g35420
malus_domestica	MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica	Prupe.1G531000_v2.0.a1
pyrus_communis	pycom08g16900 pycom15g34460
rosa_chinensis	RchiOBHm_Chr7g0236821
rosa_laevigata	RLG00000001059
rosa_multiflora	Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224800
rosa_rugosa	Rorug07G0299600
rosa_samantha	Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana	Rw7G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccB1I	GGYRCC	2 cut(s)	856, 865
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	5 cut(s)	84, 198, 338, 440, 743
AclWI	GGATC	5 cut(s)	12, 75, 240, 371, 434
AcoI	YGGCCR	4 cut(s)	162, 381, 511, 936
AcsI	RAATTY	5 cut(s)	393, 445, 658, 871, 1039
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	5 cut(s)	221, 320, 563, 578, 584
AfiI	CCNNNNNNNGG	3 cut(s)	304, 360, 875
AflIII	ACRYGT	2 cut(s)	196, 336
AgsI	TTSAA	7 cut(s)	343, 1017, 1024, 1039, 1045, 1080, 1102
AjiI	CACGTC	1 cut(s)	555
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	5 cut(s)	78, 101, 147, 346, 409
AluI	AGCT	5 cut(s)	78, 101, 147, 346, 409
Alw21I	GWGCWC	3 cut(s)	149, 180, 336
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	5 cut(s)	12, 75, 240, 371, 434
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	7 cut(s)	162, 363, 381, 413, 481, 511, 936
ApeKI	GCWGC	7 cut(s)	75, 78, 118, 517, 520, 735, 764
ApoI	RAATTY	5 cut(s)	393, 445, 658, 871, 1039
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AseI	ATTAAT	1 cut(s)	900
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	440, 743
AspS9I	GGNCC	3 cut(s)	363, 413, 481
AsuC2I	CCSGG	3 cut(s)	65, 305, 479
AsuHPI	GGTGA	1 cut(s)	841
AsuII	TTCGAA	2 cut(s)	258, 449
AvrII	CCTAGG	1 cut(s)	587
BaeGI	GKGCMC	2 cut(s)	560, 861
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	856, 865
BanII	GRGCYC	1 cut(s)	149
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
Bbv12I	GWGCWC	3 cut(s)	149, 180, 336
BbvI	GCAGC	7 cut(s)	65, 87, 105, 529, 532, 747, 776
BceAI	ACGGC	5 cut(s)	149, 299, 350, 400, 526
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BclI	TGATCA	1 cut(s)	952
BcnI	CCSGG	3 cut(s)	65, 305, 479
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	3 cut(s)	98, 588, 1083
BfmI	CTRYAG	1 cut(s)	56
BglI	GCCNNNNNGGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	156
BlnI	CCTAGG	1 cut(s)	587
Bme1390I	CCNGG	3 cut(s)	65, 305, 479
BmgBI	CACGTC	1 cut(s)	555
BmgT120I	GGNCC	3 cut(s)	363, 413, 481
BmiI	GGNNCC	5 cut(s)	6, 414, 482, 858, 867
BmrFI	CCNGG	3 cut(s)	65, 305, 479
BmsI	GCATC	2 cut(s)	346, 780
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	2 cut(s)	258, 449
BpuMI	CCSGG	3 cut(s)	65, 305, 479
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	478, 524, 587, 852, 861
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 360, 875
Bse118I	RCCGGY	2 cut(s)	460, 494
Bse1I	ACTGG	3 cut(s)	221, 232, 791
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	5 cut(s)	478, 524, 587, 852, 861
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	3 cut(s)	304, 360, 875
BseMII	CTCAG	3 cut(s)	62, 116, 162
BseNI	ACTGG	3 cut(s)	221, 232, 791
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	2 cut(s)	560, 861
BseXI	GCAGC	7 cut(s)	65, 87, 105, 529, 532, 747, 776
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	5 cut(s)	84, 198, 338, 440, 743
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	7 cut(s)	164, 365, 383, 415, 483, 513, 938
BshNI	GGYRCC	2 cut(s)	856, 865
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	3 cut(s)	149, 180, 336
BsiSI	CCGG	9 cut(s)	64, 305, 380, 424, 461, 478, 495, 827, 939
BslFI	GGGAC	2 cut(s)	485, 693
BslI	CCNNNNNNNGG	3 cut(s)	304, 360, 875
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	485, 693
BsnI	GGCC	7 cut(s)	164, 365, 383, 415, 483, 513, 938
Bso31I	GGTCTC	1 cut(s)	101
Bsp119I	TTCGAA	2 cut(s)	258, 449
Bsp1286I	GDGCHC	5 cut(s)	149, 180, 336, 560, 861
BspANI	GGCC	7 cut(s)	164, 365, 383, 415, 483, 513, 938
BspCNI	CTCAG	3 cut(s)	63, 115, 161
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	5 cut(s)	84, 198, 338, 440, 743
BspLI	GGNNCC	5 cut(s)	6, 414, 482, 858, 867
BspPI	GGATC	5 cut(s)	12, 75, 240, 371, 434
BspT104I	TTCGAA	2 cut(s)	258, 449
BspT107I	GGYRCC	2 cut(s)	856, 865
BspTNI	GGTCTC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	460, 494
BsrI	ACTGG	3 cut(s)	221, 232, 791
BssAI	RCCGGY	2 cut(s)	460, 494
BssECI	CCNNGG	5 cut(s)	478, 524, 587, 852, 861
BssNI	GRCGYC	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	566, 844
BstACI	GRCGYC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	571
BstBI	TTCGAA	2 cut(s)	258, 449
BstC8I	GCNNGC	3 cut(s)	288, 336, 515
BstDEI	CTNAG	4 cut(s)	71, 102, 148, 181
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	5 cut(s)	84, 198, 338, 440, 743
BstHHI	GCGC	2 cut(s)	440, 743
BstMAI	GTCTC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	63, 303, 477
BstSFI	CTRYAG	1 cut(s)	56
BstSLI	GKGCMC	2 cut(s)	560, 861
BstUI	CGCG	5 cut(s)	84, 198, 338, 440, 743
BstV1I	GCAGC	7 cut(s)	65, 87, 105, 529, 532, 747, 776
BstX2I	RGATCY	3 cut(s)	4, 67, 156
BstYI	RGATCY	3 cut(s)	4, 67, 156
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	7 cut(s)	164, 365, 383, 415, 483, 513, 938
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	861
BtrI	CACGTC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	768, 849
Cac8I	GCNNGC	3 cut(s)	288, 336, 515
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	2 cut(s)	440, 743
Cfr10I	RCCGGY	2 cut(s)	460, 494
Cfr13I	GGNCC	3 cut(s)	363, 413, 481
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	4 cut(s)	187, 429, 500, 695
Csp6I	GTAC	5 cut(s)	220, 319, 562, 577, 583
CviAII	CATG	1 cut(s)	360
CviQI	GTAC	5 cut(s)	220, 319, 562, 577, 583
DdeI	CTNAG	4 cut(s)	71, 102, 148, 181
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	4 cut(s)	162, 381, 511, 936
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoRI	GAATTC	2 cut(s)	445, 871
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	1 cut(s)	363
FaiI	YATR	9 cut(s)	327, 361, 597, 915, 935, 1012, 1030, 1056, 1108
FaqI	GGGAC	2 cut(s)	485, 693
FatI	CATG	1 cut(s)	359
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	952
FblI	GTMKAC	1 cut(s)	539
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	3 cut(s)	98, 588, 1083
GlaI	GCGC	2 cut(s)	439, 742
GsaI	CCCAGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	7 cut(s)	164, 365, 383, 415, 483, 513, 938
HapII	CCGG	9 cut(s)	64, 305, 380, 424, 461, 478, 495, 827, 939
HgaI	GACGC	4 cut(s)	187, 429, 500, 695
HhaI	GCGC	2 cut(s)	440, 743
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	363
Hin6I	GCGC	2 cut(s)	438, 741
HinP1I	GCGC	2 cut(s)	438, 741
HincII	GTYRAC	2 cut(s)	202, 540
HindII	GTYRAC	2 cut(s)	202, 540
HinfI	GANTC	3 cut(s)	39, 942, 995
HpaII	CCGG	9 cut(s)	64, 305, 380, 424, 461, 478, 495, 827, 939
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	3 cut(s)	202, 540, 756
Hpy188I	TCNGA	9 cut(s)	38, 72, 151, 156, 238, 250, 376, 621, 657
Hpy188III	TCNNGA	4 cut(s)	104, 268, 531, 547
Hpy8I	GTNNAC	3 cut(s)	202, 540, 756
Hpy99I	CGWCG	8 cut(s)	170, 173, 254, 353, 445, 494, 512, 556
HpyAV	CCTTC	2 cut(s)	122, 739
HpyCH4III	ACNGT	2 cut(s)	566, 844
HpyCH4IV	ACGT	2 cut(s)	554, 570
HpyCH4V	TGCA	2 cut(s)	359, 676
HpyF3I	CTNAG	4 cut(s)	71, 102, 148, 181
HpySE526I	ACGT	2 cut(s)	554, 570
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	363
HspAI	GCGC	2 cut(s)	438, 741
Ksp22I	TGATCA	1 cut(s)	952
LmnI	GCTCC	2 cut(s)	300, 331
Lsp1109I	GCAGC	7 cut(s)	65, 87, 105, 529, 532, 747, 776
LweI	GCATC	2 cut(s)	346, 780
MaeI	CTAG	3 cut(s)	98, 588, 1083
MaeII	ACGT	2 cut(s)	554, 570
MaeIII	GTNAC	4 cut(s)	566, 829, 923, 970
MflI	RGATCY	3 cut(s)	4, 67, 156
MhlI	GDGCHC	5 cut(s)	149, 180, 336, 560, 861
MluI	ACGCGT	2 cut(s)	196, 336
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	308, 519, 606, 626, 634, 862
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	4 cut(s)	900, 908, 1062, 1070
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	3 cut(s)	78, 118, 738
MspI	CCGG	9 cut(s)	64, 305, 380, 424, 461, 478, 495, 827, 939
MspR9I	CCNGG	3 cut(s)	65, 305, 479
MvnI	CGCG	5 cut(s)	84, 198, 338, 440, 743
NciI	CCSGG	3 cut(s)	65, 305, 479
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	5 cut(s)	6, 414, 482, 858, 867
NmeAIII	GCCGAG	4 cut(s)	49, 70, 414, 549
NmuCI	GTSAC	2 cut(s)	829, 923
NsiI	ATGCAT	1 cut(s)	361
NspV	TTCGAA	2 cut(s)	258, 449
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 536, 557, 576
PfeI	GAWTC	2 cut(s)	39, 942
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
Ppu21I	YACGTR	1 cut(s)	571
PshBI	ATTAAT	1 cut(s)	900
Psp124BI	GAGCTC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	409
PspN4I	GGNNCC	5 cut(s)	6, 414, 482, 858, 867
PspPI	GGNCC	3 cut(s)	363, 413, 481
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	3 cut(s)	4, 67, 156
PvuI	CGATCG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	5 cut(s)	221, 320, 563, 578, 584
RsaNI	GTAC	5 cut(s)	220, 319, 562, 577, 583
RseI	CAYNNNNRTG	1 cut(s)	932
SacI	GAGCTC	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	4 cut(s)	900, 908, 1062, 1070
Sau96I	GGNCC	3 cut(s)	363, 413, 481
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	3 cut(s)	65, 305, 479
SduI	GDGCHC	5 cut(s)	149, 180, 336, 560, 861
SfaNI	GCATC	2 cut(s)	346, 780
SfcI	CTRYAG	1 cut(s)	56
SfuI	TTCGAA	2 cut(s)	258, 449
SgrAI	CRCCGGYG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	932
SspMI	CTAG	3 cut(s)	98, 588, 1083
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	63, 303, 477
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	2 cut(s)	566, 844
TaiI	ACGT	2 cut(s)	557, 573
TaqI	TCGA	8 cut(s)	171, 258, 429, 443, 449, 530, 539, 639
TaqII	GACCGA	1 cut(s)	125
TauI	GCSGC	9 cut(s)	84, 118, 188, 469, 667, 735, 741, 764, 776
TfiI	GAWTC	2 cut(s)	39, 942
Tru1I	TTAA	4 cut(s)	900, 908, 1062, 1070
Tru9I	TTAA	4 cut(s)	900, 908, 1062, 1070
TscAI	CASTG	2 cut(s)	775, 849
TseFI	GTSAC	2 cut(s)	829, 923
TseI	GCWGC	7 cut(s)	75, 78, 118, 517, 520, 735, 764
Tsp45I	GTSAC	2 cut(s)	829, 923
TspGWI	ACGGA	1 cut(s)	988
TspRI	CASTG	2 cut(s)	775, 849
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	5 cut(s)	393, 445, 658, 871, 1039
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	3 cut(s)	98, 588, 1083
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.