Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011428

Physical Location & Seq

Genomic Coordinates Reverse (-)

29612177 .. 29612734

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGAATGATAGTACCCAAGATGATGAACTGAAATTGTTCCCAACTGATGTTGGAGAAGGTGATTACAAATATCAGTACCAAATAGGTTCTACAACTTATTTTGAATCGCATGGGAGTACCCAAAGTACAGAGGAGAGCAGCAGCAATGCAAATAATACTTCAAGTTACGGAGTAATACACATACCAGATCTCCATTTACTGGAGGATGATTTGAAACTCATGGGACAGTTTATAAAGGACTACAGAGTACCTCCTGAGATCTGGTTCTCACTTCTGACAAGAATCAGATATTCTCGTGCCTTCCGTTCACCTAGAACCTGCAAGCTTGGCCTTCTTGCATTTACTGTGCTTGTTCATGCTAGTGATGCTCCTGAAGAACTTCTGTCTTTCTTTGCTAATGAGCCAGACTATATTAATAGATCAATTAGAATTGTGCCATCAGAAGAAGTAGTTTCTGGAACCATCAGAACAAATACAATGCTTGCCTTATCGAAGATCATGCACCAACCCTCTTGTCCACTGCATCACATTGTTAGTGTTTCTGCTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

185

Amino Acids

20.78

Weight (kDa)

5.28

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF908	PF06012	33 - 169	1.5e-12	Domain of Unknown Function (DUF908)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01710 AT2G01710
fragaria_vesca	FvH4_5g35420
malus_domestica	MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica	Prupe.1G531000_v2.0.a1
pyrus_communis	pycom08g16900 pycom15g34460
rosa_chinensis	RchiOBHm_Chr7g0236821
rosa_laevigata	RLG00000001059
rosa_multiflora	Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224800
rosa_rugosa	Rorug07G0299600
rosa_samantha	Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana	Rw7G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	5 cut(s)	16, 80, 121, 130, 252
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	107, 165, 217
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	141, 144
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	2 cut(s)	38, 381
AsuHPI	GGTGA	2 cut(s)	74, 303
BauI	CACGAG	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	153, 156
BccI	CCATC	2 cut(s)	448, 473
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BfaI	CTAG	2 cut(s)	315, 363
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	329
BglII	AGATCT	2 cut(s)	190, 261
BisI	GCNGC	2 cut(s)	142, 145
BlsI	GCNGC	2 cut(s)	143, 146
BmiI	GGNNCC	1 cut(s)	463
BmsI	GCATC	2 cut(s)	358, 535
BpmI	CTGGAG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	153, 156
BshFI	GGCC	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	190, 261, 422, 498
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	4 cut(s)	190, 261, 422, 498
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	231, 349
BstC8I	GCNNGC	2 cut(s)	326, 486
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	193, 264, 425, 501
BstMBI	GATC	4 cut(s)	190, 261, 422, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 368
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	153, 156
BstX2I	RGATCY	2 cut(s)	190, 261
BstYI	RGATCY	2 cut(s)	190, 261
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	326, 486
Csp6I	GTAC	5 cut(s)	15, 79, 120, 129, 251
CviAII	CATG	4 cut(s)	113, 223, 359, 502
CviJI	RGCY	3 cut(s)	328, 333, 406
CviKI_1	RGCY	3 cut(s)	328, 333, 406
CviQI	GTAC	5 cut(s)	15, 79, 120, 129, 251
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	192, 263, 424, 500
DpnII	GATC	4 cut(s)	190, 261, 422, 498
Eco57I	CTGAAG	1 cut(s)	396
FaeI	CATG	4 cut(s)	116, 226, 362, 505
FaiI	YATR	8 cut(s)	114, 185, 224, 236, 360, 414, 503, 556
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	112, 222, 358, 501
Fnu4HI	GCNGC	2 cut(s)	142, 145
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	142, 145
FspBI	CTAG	2 cut(s)	315, 363
GluI	GCNGC	2 cut(s)	142, 145
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	116, 226, 362, 505
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	107, 285
HphI	GGTGA	2 cut(s)	74, 303
Hpy166II	GTNNAC	2 cut(s)	311, 521
Hpy188I	TCNGA	4 cut(s)	279, 290, 445, 470
Hpy188III	TCNNGA	3 cut(s)	257, 374, 459
Hpy8I	GTNNAC	2 cut(s)	311, 521
HpyAV	CCTTC	3 cut(s)	53, 313, 344
HpyCH4III	ACNGT	2 cut(s)	231, 349
HpyCH4V	TGCA	6 cut(s)	152, 324, 341, 505, 526, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 368
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	116, 226, 362, 505
Kzo9I	GATC	4 cut(s)	190, 261, 422, 498
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	8 cut(s)	188, 201, 250, 270, 334, 387, 420, 444
Lsp1109I	GCAGC	2 cut(s)	153, 156
LweI	GCATC	2 cut(s)	358, 535
MaeI	CTAG	2 cut(s)	315, 363
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	192, 263, 424, 500
MboI	GATC	4 cut(s)	190, 261, 422, 498
MboII	GAAGA	3 cut(s)	389, 458, 508
MflI	RGATCY	2 cut(s)	190, 261
MluCI	AATT	3 cut(s)	35, 426, 432
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	127, 199, 264, 523
MroXI	GAANNNNTTC	2 cut(s)	38, 381
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	330, 368
NdeII	GATC	4 cut(s)	190, 261, 422, 498
NlaIII	CATG	4 cut(s)	116, 226, 362, 505
NlaIV	GGNNCC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PdmI	GAANNNNTTC	2 cut(s)	38, 381
PfeI	GAWTC	2 cut(s)	107, 285
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	143, 146
PshBI	ATTAAT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	190, 261
RsaI	GTAC	5 cut(s)	16, 80, 121, 130, 252
RsaNI	GTAC	5 cut(s)	15, 79, 120, 129, 251
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	142, 145
Sau3AI	GATC	4 cut(s)	190, 261, 422, 498
SetI	ASST	6 cut(s)	64, 91, 256, 316, 323, 330
SfaNI	GCATC	2 cut(s)	358, 535
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	35, 426, 432
SspMI	CTAG	2 cut(s)	315, 363
TaaI	ACNGT	2 cut(s)	231, 349
TaqI	TCGA	1 cut(s)	494
TasI	AATT	3 cut(s)	35, 426, 432
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	107, 285
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	2 cut(s)	141, 144
TspDTI	ATGAA	2 cut(s)	42, 347
TspGWI	ACGGA	2 cut(s)	186, 296
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	38, 381
XspI	CTAG	2 cut(s)	315, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.