Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011428

Physical Location & Seq

Genomic Coordinates Forward (+)

62885449 .. 62886456

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG442700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGACCACAATCCGAACAGAGCCGAAGCCGAGCGGTTACTCGGAATCGCCGAGAAGCTCTTACAGAACCGAGATCTGAGCAGCTCGCGCGACTTCGCCATTCTGGCGCAAGAAACAGAGCCGCTATTGGACGGCTCCGATCAGATCTTAGCTGTCGTCGACGTCCTCCTAGCCGCCGATAAGCGCGTAAACAACCACCACGACTGGTACTCCATTCTCCAGGTGGATCGCCGATCCGACGACCACGATCTGATCAAGAGATCGTACCGACGGCTGGCGTTGCTCCTCCACCCGGACAAGAACAAATACGCCTTCGCCGAGCACGCCTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTTTCCGACCCGGCCAAGAAGCCGGTCTTCGACACCGAGCTGGGTCTCTACAGCCCAGTCGATCTCACCGCCGCCGCCGCCGCTGCAGCAGCCTCCAATCCGAACAAGCTTCCGGTGCGGCGGGGGCAGAATGCTCGAAACGACGGCGTTTCGGACGAGCAGCAGCAGCAAAATCAACAGAGGTCGAGATTATCGAGCTTCTGGACGGCGTGTCCTTACTGTTATATACTGTATGAGTACCCTAGGGTTTATGAGAATTGCTGTTTGAGGTGTCAGAATTGTAAGAGAGGGTTTGAGGCCGTTTTGGTCCCGAATTTGCCGCCATTGGTGCAAGGCCAGGATGCCTATTACTGTTGCTGGGGCTTCTTCCCCATGGGGTTTGTTGGTGGCAGCTCAGCAAATGGAGGAAAGGGCAAGGCGGCTGCCGCCACGCCGGCCTTCCCCACTTGGATGCCACCGATTTTCACAACGCCGCCGCCGCAGCATAAAGCCCCTGAGACTTCCAGGGCACCCCCTGTGACTGTGCCGCCGCCGCCGCCTGCCCCGGTGGCGGCAACGGGTGATGGAATGTTGAATTTTTCGGGTGGGATCTCGAATTCAGGGACAGGGACTAATCCAAAGAAGAGGGGACGGCCGCGGAAGTTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

335

Amino Acids

36.78

Weight (kDa)

8.71

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	68 - 130	5.9e-18	DnaJ domain
Zn_ribbon_20	PF23551	186 - 220	3.5e-08	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01710 AT2G01710
fragaria_vesca	FvH4_5g35420
malus_domestica	MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1
prunus_persica	Prupe.1G531000_v2.0.a1
pyrus_communis	pycom08g16900 pycom15g34460
rosa_chinensis	RchiOBHm_Chr7g0236821
rosa_laevigata	RLG00000001059
rosa_multiflora	Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224800
rosa_rugosa	Rorug07G0299600
rosa_samantha	Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700
rosa_wichuraiana	Rw7G037750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	865
AccBSI	CCGCTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	4 cut(s)	88, 90, 186, 994
AclWI	GGATC	3 cut(s)	228, 234, 953
AcoI	YGGCCR	2 cut(s)	369, 989
AcsI	RAATTY	3 cut(s)	670, 931, 952
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	3 cut(s)	209, 266, 596
AfiI	CCNNNNNNNGG	4 cut(s)	274, 292, 348, 907
AgsI	TTSAA	2 cut(s)	331, 931
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	3 cut(s)	219, 693, 860
AluBI	AGCT	8 cut(s)	58, 84, 152, 334, 397, 466, 555, 750
AluI	AGCT	8 cut(s)	58, 84, 152, 334, 397, 466, 555, 750
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	407, 848
AlwI	GGATC	3 cut(s)	228, 234, 953
AoxI	GGCC	6 cut(s)	351, 369, 654, 691, 792, 989
ApoI	RAATTY	3 cut(s)	670, 931, 952
AspA2I	CCTAGG	1 cut(s)	599
AspLEI	GCGC	3 cut(s)	90, 109, 186
AspS9I	GGNCC	3 cut(s)	4, 351, 664
AsuC2I	CCSGG	3 cut(s)	293, 368, 902
AsuHPI	GGTGA	2 cut(s)	415, 929
AvaII	GGWCC	2 cut(s)	4, 664
AvrII	CCTAGG	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	324
BccI	CCATC	1 cut(s)	914
BceAI	ACGGC	7 cut(s)	148, 287, 338, 517, 579, 641, 1004
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	3 cut(s)	221, 695, 862
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	3 cut(s)	293, 368, 902
BcoDI	GTCTC	2 cut(s)	407, 848
BfaI	CTAG	2 cut(s)	170, 600
BfmI	CTRYAG	2 cut(s)	406, 441
BglI	GCCNNNNNGGC	3 cut(s)	104, 791, 905
BglII	AGATCT	2 cut(s)	73, 144
BlnI	CCTAGG	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	751
Bme1390I	CCNGG	6 cut(s)	221, 293, 368, 695, 862, 902
Bme18I	GGWCC	2 cut(s)	4, 664
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgT120I	GGNCC	3 cut(s)	4, 351, 664
BmiI	GGNNCC	3 cut(s)	136, 666, 867
BmrFI	CCNGG	6 cut(s)	221, 293, 368, 695, 862, 902
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	334, 688, 798
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	751
BpuMI	CCSGG	3 cut(s)	293, 368, 902
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	5 cut(s)	599, 729, 861, 900, 992
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 292, 348, 907
Bse118I	RCCGGY	2 cut(s)	379, 790
Bse1I	ACTGG	2 cut(s)	209, 413
BseBI	CCWGG	3 cut(s)	221, 695, 862
BseDI	CCNNGG	5 cut(s)	599, 729, 861, 900, 992
BseGI	GGATG	2 cut(s)	703, 813
BseLI	CCNNNNNNNGG	4 cut(s)	274, 292, 348, 907
BseMII	CTCAG	3 cut(s)	68, 765, 843
BseNI	ACTGG	2 cut(s)	209, 413
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	868
BseX3I	CGGCCG	1 cut(s)	989
BseYI	CCCAGC	2 cut(s)	397, 714
Bsh1236I	CGCG	4 cut(s)	88, 90, 186, 994
Bsh1285I	CGRYCG	1 cut(s)	992
BshFI	GGCC	6 cut(s)	353, 371, 656, 693, 794, 991
BshNI	GGYRCC	1 cut(s)	865
BsiEI	CGRYCG	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	6 cut(s)	293, 368, 380, 470, 791, 902
BslFI	GGGAC	4 cut(s)	650, 973, 979, 999
BslI	CCNNNNNNNGG	4 cut(s)	274, 292, 348, 907
BsmAI	GTCTC	2 cut(s)	407, 848
BsmFI	GGGAC	4 cut(s)	650, 973, 979, 999
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	6 cut(s)	353, 371, 656, 693, 794, 991
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	324, 868
Bsp1720I	GCTNAGC	1 cut(s)	751
Bsp19I	CCATGG	1 cut(s)	729
BspANI	GGCC	6 cut(s)	353, 371, 656, 693, 794, 991
BspCNI	CTCAG	3 cut(s)	69, 764, 844
BspFNI	CGCG	4 cut(s)	88, 90, 186, 994
BspLI	GGNNCC	3 cut(s)	136, 666, 867
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	3 cut(s)	228, 234, 953
BspT107I	GGYRCC	1 cut(s)	865
BspTNI	GGTCTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	379, 790
BsrI	ACTGG	2 cut(s)	209, 413
BssAI	RCCGGY	2 cut(s)	379, 790
BssECI	CCNNGG	5 cut(s)	599, 729, 861, 900, 992
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	599, 729
Bst2UI	CCWGG	3 cut(s)	221, 695, 862
Bst4CI	ACNGT	4 cut(s)	578, 588, 710, 880
Bst6I	CTCTTC	1 cut(s)	974
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	5 cut(s)	86, 276, 324, 792, 897
BstDEI	CTNAG	5 cut(s)	77, 148, 751, 852, 1005
BstDSI	CCRYGG	2 cut(s)	729, 992
BstF5I	GGATG	2 cut(s)	703, 813
BstFNI	CGCG	4 cut(s)	88, 90, 186, 994
BstHHI	GCGC	3 cut(s)	90, 109, 186
BstMAI	GTCTC	2 cut(s)	407, 848
BstMCI	CGRYCG	1 cut(s)	992
BstNI	CCWGG	3 cut(s)	221, 695, 862
BstSCI	CCNGG	6 cut(s)	219, 291, 366, 693, 860, 900
BstSFI	CTRYAG	2 cut(s)	406, 441
BstSLI	GKGCMC	1 cut(s)	868
BstUI	CGCG	4 cut(s)	88, 90, 186, 994
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	3 cut(s)	73, 144, 945
BstYI	RGATCY	3 cut(s)	73, 144, 945
BstZI	CGGCCG	1 cut(s)	989
BsuRI	GGCC	6 cut(s)	353, 371, 656, 693, 794, 991
BtgI	CCRYGG	2 cut(s)	729, 992
BtsCI	GGATG	2 cut(s)	703, 813
Cac8I	GCNNGC	5 cut(s)	86, 276, 324, 792, 897
CfoI	GCGC	3 cut(s)	90, 109, 186
Cfr10I	RCCGGY	2 cut(s)	379, 790
Cfr13I	GGNCC	3 cut(s)	4, 351, 664
Cfr42I	CCGCGG	1 cut(s)	995
Csp6I	GTAC	3 cut(s)	208, 265, 595
CviAII	CATG	2 cut(s)	348, 730
CviQI	GTAC	3 cut(s)	208, 265, 595
DdeI	CTNAG	5 cut(s)	77, 148, 751, 852, 1005
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	2 cut(s)	369, 989
EagI	CGGCCG	1 cut(s)	989
Eam1104I	CTCTTC	1 cut(s)	974
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	974
EclXI	CGGCCG	1 cut(s)	989
Eco130I	CCWWGG	2 cut(s)	599, 729
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	4, 664
Eco52I	CGGCCG	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	3 cut(s)	219, 693, 860
EcoT14I	CCWWGG	2 cut(s)	599, 729
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	599, 729
FaeI	CATG	2 cut(s)	351, 733
FaiI	YATR	7 cut(s)	349, 582, 584, 591, 609, 731, 843
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	4 cut(s)	650, 973, 979, 999
FatI	CATG	2 cut(s)	347, 729
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	159
FokI	GGATG	2 cut(s)	710, 820
FspBI	CTAG	2 cut(s)	170, 600
GlaI	GCGC	3 cut(s)	89, 108, 185
GsaI	CCCAGC	2 cut(s)	401, 718
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	6 cut(s)	353, 371, 656, 693, 794, 991
HapII	CCGG	6 cut(s)	293, 368, 380, 470, 791, 902
HhaI	GCGC	3 cut(s)	90, 109, 186
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	351, 733
Hin6I	GCGC	3 cut(s)	88, 107, 184
HinP1I	GCGC	3 cut(s)	88, 107, 184
HincII	GTYRAC	2 cut(s)	160, 1002
HindII	GTYRAC	2 cut(s)	160, 1002
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	45
HpaI	GTTAAC	1 cut(s)	1002
HpaII	CCGG	6 cut(s)	293, 368, 380, 470, 791, 902
HphI	GGTGA	2 cut(s)	415, 929
Hpy166II	GTNNAC	3 cut(s)	160, 190, 1002
Hpy188III	TCNNGA	5 cut(s)	256, 543, 559, 667, 949
Hpy8I	GTNNAC	3 cut(s)	160, 190, 1002
Hpy99I	CGWCG	6 cut(s)	161, 164, 242, 273, 341, 503
HpyAV	CCTTC	3 cut(s)	322, 337, 805
HpyCH4III	ACNGT	4 cut(s)	578, 588, 710, 880
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	347, 443, 688
HpyF3I	CTNAG	5 cut(s)	77, 148, 751, 852, 1005
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	351, 733
HspAI	GCGC	3 cut(s)	88, 107, 184
KroI	GCCGGC	1 cut(s)	790
KroNI	GCCGGC	1 cut(s)	792
Ksp22I	TGATCA	1 cut(s)	252
KspAI	GTTAAC	1 cut(s)	1002
KspI	CCGCGG	1 cut(s)	995
LmnI	GCTCC	2 cut(s)	140, 288
LweI	GCATC	3 cut(s)	334, 688, 798
MaeI	CTAG	2 cut(s)	170, 600
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	36, 874
MbiI	CCGCTC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	376, 715, 991
MflI	RGATCY	3 cut(s)	73, 144, 945
MhlI	GDGCHC	2 cut(s)	324, 868
MluCI	AATT	5 cut(s)	613, 634, 670, 931, 952
MmeI	TCCRAC	2 cut(s)	261, 387
MnlI	CCTC	9 cut(s)	176, 296, 460, 531, 618, 638, 646, 755, 975
Mph1103I	ATGCAT	1 cut(s)	349
MroNI	GCCGGC	1 cut(s)	790
MseI	TTAA	1 cut(s)	1001
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	2 cut(s)	440, 994
MspI	CCGG	6 cut(s)	293, 368, 380, 470, 791, 902
MspR9I	CCNGG	6 cut(s)	221, 293, 368, 695, 862, 902
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	3 cut(s)	221, 695, 862
MvnI	CGCG	4 cut(s)	88, 90, 186, 994
NaeI	GCCGGC	1 cut(s)	792
NciI	CCSGG	3 cut(s)	293, 368, 902
NcoI	CCATGG	1 cut(s)	729
NgoMIV	GCCGGC	1 cut(s)	790
NlaIII	CATG	2 cut(s)	351, 733
NlaIV	GGNNCC	3 cut(s)	136, 666, 867
NmeAIII	GCCGAG	3 cut(s)	55, 76, 343
NmuCI	GTSAC	1 cut(s)	874
NsiI	ATGCAT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 315, 548
PctI	GAATGC	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	219, 693, 860
PspFI	CCCAGC	2 cut(s)	397, 714
PspGI	CCWGG	3 cut(s)	219, 693, 860
PspN4I	GGNNCC	3 cut(s)	136, 666, 867
PspPI	GGNCC	3 cut(s)	4, 351, 664
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	73, 144, 945
RsaI	GTAC	3 cut(s)	209, 266, 596
RsaNI	GTAC	3 cut(s)	208, 265, 595
RseI	CAYNNNNRTG	1 cut(s)	806
SacII	CCGCGG	1 cut(s)	995
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	1001
Sau96I	GGNCC	3 cut(s)	4, 351, 664
ScrFI	CCNGG	6 cut(s)	221, 293, 368, 695, 862, 902
SduI	GDGCHC	2 cut(s)	324, 868
SfaNI	GCATC	3 cut(s)	334, 688, 798
SfcI	CTRYAG	2 cut(s)	406, 441
Sfr303I	CCGCGG	1 cut(s)	995
SgrBI	CCGCGG	1 cut(s)	995
SgrDI	CGTCGACG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	4, 664
SmiMI	CAYNNNNRTG	1 cut(s)	806
Sse9I	AATT	5 cut(s)	613, 634, 670, 931, 952
SspMI	CTAG	2 cut(s)	170, 600
StyD4I	CCNGG	6 cut(s)	219, 291, 366, 693, 860, 900
StyI	CCWWGG	2 cut(s)	599, 729
TaaI	ACNGT	4 cut(s)	578, 588, 710, 880
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	7 cut(s)	159, 387, 417, 493, 542, 551, 950
TasI	AATT	5 cut(s)	613, 634, 670, 931, 952
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TseFI	GTSAC	1 cut(s)	874
Tsp45I	GTSAC	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	4, 664
XapI	RAATTY	3 cut(s)	670, 931, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	170, 600
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.