DnaJ domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01710 AT2G01710 |
| fragaria_vesca | FvH4_5g35420 |
| malus_domestica | MD08G1196700.v1.1 MD15G1301600.v1.1 MD15G1384400.v1.1 |
| prunus_persica | Prupe.1G531000_v2.0.a1 |
| pyrus_communis | pycom08g16900 pycom15g34460 |
| rosa_chinensis | RchiOBHm_Chr7g0236821 |
| rosa_laevigata | RLG00000001059 |
| rosa_multiflora | Rmu_sc0002867.1_g000022 Rmu_sc0008851.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00224800 |
| rosa_rugosa | Rorug07G0299600 |
| rosa_samantha | Rh7AG454800 Rh7BG426000 Rh7CG473400 Rh7DG442700 |
| rosa_wichuraiana | Rw7G037750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1093 |
| AatII | GACGTC | 1 cut(s) | 360 |
| Acc36I | ACCTGC | 1 cut(s) | 1093 |
| AccB1I | GGYRCC | 2 cut(s) | 1057, 1093 |
| AccBSI | CCGCTC | 1 cut(s) | 229 |
| AccI | GTMKAC | 1 cut(s) | 354 |
| AccII | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| AclWI | GGATC | 3 cut(s) | 173, 423, 429 |
| AcoI | YGGCCR | 2 cut(s) | 564, 1184 |
| AcsI | RAATTY | 3 cut(s) | 856, 1126, 1147 |
| AcyI | GRCGYC | 1 cut(s) | 357 |
| AfaI | GTAC | 3 cut(s) | 404, 461, 782 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 469, 487, 543 |
| AgsI | TTSAA | 2 cut(s) | 526, 1126 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 753 |
| AjnI | CCWGG | 3 cut(s) | 414, 879, 1052 |
| AluBI | AGCT | 6 cut(s) | 253, 279, 529, 592, 655, 741 |
| AluI | AGCT | 6 cut(s) | 253, 279, 529, 592, 655, 741 |
| Alw21I | GWGCWC | 1 cut(s) | 519 |
| Alw26I | GTCTC | 1 cut(s) | 1040 |
| AlwI | GGATC | 3 cut(s) | 173, 423, 429 |
| AoxI | GGCC | 6 cut(s) | 564, 595, 840, 877, 978, 1184 |
| ApeKI | GCWGC | 7 cut(s) | 276, 629, 632, 635, 706, 709, 965 |
| ApoI | RAATTY | 3 cut(s) | 856, 1126, 1147 |
| AsiSI | GCGATCGC | 1 cut(s) | 165 |
| AspA2I | CCTAGG | 1 cut(s) | 785 |
| AspLEI | GCGC | 4 cut(s) | 285, 304, 381, 976 |
| AspS9I | GGNCC | 4 cut(s) | 199, 546, 595, 850 |
| AsuC2I | CCSGG | 3 cut(s) | 488, 563, 1091 |
| AsuHPI | GGTGA | 2 cut(s) | 610, 1124 |
| AvaII | GGWCC | 3 cut(s) | 199, 546, 850 |
| AvrII | CCTAGG | 1 cut(s) | 785 |
| BaeGI | GKGCMC | 2 cut(s) | 1060, 1098 |
| BanI | GGYRCC | 2 cut(s) | 1057, 1093 |
| BbsI | GAAGAC | 1 cut(s) | 571 |
| Bbv12I | GWGCWC | 1 cut(s) | 519 |
| BbvI | GCAGC | 7 cut(s) | 288, 616, 644, 647, 718, 721, 952 |
| BccI | CCATC | 1 cut(s) | 356 |
| BceAI | ACGGC | 7 cut(s) | 152, 343, 482, 706, 765, 827, 1199 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 662, 696 |
| BciT130I | CCWGG | 3 cut(s) | 416, 881, 1054 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BcnI | CCSGG | 3 cut(s) | 488, 563, 1091 |
| BcoDI | GTCTC | 1 cut(s) | 1040 |
| BfaI | CTAG | 2 cut(s) | 365, 786 |
| BfmI | CTRYAG | 3 cut(s) | 257, 601, 630 |
| BfuAI | ACCTGC | 1 cut(s) | 1093 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| BglII | AGATCT | 2 cut(s) | 268, 339 |
| BlnI | CCTAGG | 1 cut(s) | 785 |
| Bme1390I | CCNGG | 6 cut(s) | 416, 488, 563, 881, 1054, 1091 |
| Bme18I | GGWCC | 3 cut(s) | 199, 546, 850 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 753 |
| BmgT120I | GGNCC | 4 cut(s) | 199, 546, 595, 850 |
| BmiI | GGNNCC | 4 cut(s) | 331, 852, 1059, 1095 |
| BmrFI | CCNGG | 6 cut(s) | 416, 488, 563, 881, 1054, 1091 |
| BmrI | ACTGGG | 1 cut(s) | 602 |
| BmsI | GCATC | 3 cut(s) | 529, 874, 984 |
| BmuI | ACTGGG | 1 cut(s) | 602 |
| BpiI | GAAGAC | 1 cut(s) | 571 |
| BpmI | CTGGAG | 1 cut(s) | 398 |
| BpuMI | CCSGG | 3 cut(s) | 488, 563, 1091 |
| BsaBI | GATNNNNATC | 1 cut(s) | 183 |
| BsaHI | GRCGYC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 6 cut(s) | 785, 915, 1053, 1089, 1098, 1187 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 389, 419 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 469, 487, 543 |
| Bse118I | RCCGGY | 2 cut(s) | 574, 976 |
| Bse1I | ACTGG | 2 cut(s) | 404, 608 |
| Bse8I | GATNNNNATC | 1 cut(s) | 183 |
| BseBI | CCWGG | 3 cut(s) | 416, 881, 1054 |
| BseDI | CCNNGG | 6 cut(s) | 785, 915, 1053, 1089, 1098, 1187 |
| BseGI | GGATG | 2 cut(s) | 889, 999 |
| BseJI | GATNNNNATC | 1 cut(s) | 183 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 469, 487, 543 |
| BseMII | CTCAG | 2 cut(s) | 263, 1035 |
| BseNI | ACTGG | 2 cut(s) | 404, 608 |
| BseRI | GAGGAG | 1 cut(s) | 470 |
| BseSI | GKGCMC | 2 cut(s) | 1060, 1098 |
| BseXI | GCAGC | 7 cut(s) | 288, 616, 644, 647, 718, 721, 952 |
| BseYI | CCCAGC | 2 cut(s) | 592, 900 |
| Bsh1236I | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| Bsh1285I | CGRYCG | 1 cut(s) | 165 |
| BshFI | GGCC | 6 cut(s) | 566, 597, 842, 879, 980, 1186 |
| BshNI | GGYRCC | 2 cut(s) | 1057, 1093 |
| BsiEI | CGRYCG | 1 cut(s) | 165 |
| BsiHKAI | GWGCWC | 1 cut(s) | 519 |
| BsiSI | CCGG | 6 cut(s) | 488, 563, 575, 659, 977, 1091 |
| BslFI | GGGAC | 4 cut(s) | 836, 1168, 1174, 1194 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 469, 487, 543 |
| BsmAI | GTCTC | 1 cut(s) | 1040 |
| BsmFI | GGGAC | 4 cut(s) | 836, 1168, 1174, 1194 |
| BsmI | GAATGC | 1 cut(s) | 682 |
| BsnI | GGCC | 6 cut(s) | 566, 597, 842, 879, 980, 1186 |
| Bsp1286I | GDGCHC | 3 cut(s) | 519, 1060, 1098 |
| Bsp19I | CCATGG | 1 cut(s) | 915 |
| BspANI | GGCC | 6 cut(s) | 566, 597, 842, 879, 980, 1186 |
| BspCNI | CTCAG | 2 cut(s) | 264, 1036 |
| BspFNI | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| BspLI | GGNNCC | 4 cut(s) | 331, 852, 1059, 1095 |
| BspMAI | CTGCAG | 1 cut(s) | 634 |
| BspMI | ACCTGC | 1 cut(s) | 1093 |
| BspPI | GGATC | 3 cut(s) | 173, 423, 429 |
| BspT107I | GGYRCC | 2 cut(s) | 1057, 1093 |
| BsrBI | CCGCTC | 1 cut(s) | 229 |
| BsrFI | RCCGGY | 2 cut(s) | 574, 976 |
| BsrI | ACTGG | 2 cut(s) | 404, 608 |
| BssAI | RCCGGY | 2 cut(s) | 574, 976 |
| BssECI | CCNNGG | 6 cut(s) | 785, 915, 1053, 1089, 1098, 1187 |
| BssNI | GRCGYC | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 2 cut(s) | 785, 915 |
| Bst2UI | CCWGG | 3 cut(s) | 416, 881, 1054 |
| Bst4CI | ACNGT | 4 cut(s) | 550, 764, 774, 896 |
| Bst6I | CTCTTC | 1 cut(s) | 1169 |
| BstACI | GRCGYC | 1 cut(s) | 357 |
| BstC8I | GCNNGC | 5 cut(s) | 281, 471, 519, 978, 1098 |
| BstDEI | CTNAG | 4 cut(s) | 272, 343, 1044, 1200 |
| BstDSI | CCRYGG | 3 cut(s) | 915, 1098, 1187 |
| BstF5I | GGATG | 2 cut(s) | 889, 999 |
| BstFNI | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| BstHHI | GCGC | 4 cut(s) | 285, 304, 381, 976 |
| BstMAI | GTCTC | 1 cut(s) | 1040 |
| BstMCI | CGRYCG | 1 cut(s) | 165 |
| BstNI | CCWGG | 3 cut(s) | 416, 881, 1054 |
| BstSCI | CCNGG | 6 cut(s) | 414, 486, 561, 879, 1052, 1089 |
| BstSFI | CTRYAG | 3 cut(s) | 257, 601, 630 |
| BstSLI | GKGCMC | 2 cut(s) | 1060, 1098 |
| BstUI | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| BstV1I | GCAGC | 7 cut(s) | 288, 616, 644, 647, 718, 721, 952 |
| BstV2I | GAAGAC | 1 cut(s) | 571 |
| BstX2I | RGATCY | 2 cut(s) | 268, 339 |
| BstYI | RGATCY | 2 cut(s) | 268, 339 |
| BsuRI | GGCC | 6 cut(s) | 566, 597, 842, 879, 980, 1186 |
| BtgI | CCRYGG | 3 cut(s) | 915, 1098, 1187 |
| BtsCI | GGATG | 2 cut(s) | 889, 999 |
| BveI | ACCTGC | 1 cut(s) | 1093 |
| Cac8I | GCNNGC | 5 cut(s) | 281, 471, 519, 978, 1098 |
| CfoI | GCGC | 4 cut(s) | 285, 304, 381, 976 |
| Cfr10I | RCCGGY | 2 cut(s) | 574, 976 |
| Cfr13I | GGNCC | 4 cut(s) | 199, 546, 595, 850 |
| Cfr42I | CCGCGG | 1 cut(s) | 1101 |
| Csp6I | GTAC | 3 cut(s) | 403, 460, 781 |
| CviAII | CATG | 2 cut(s) | 543, 916 |
| CviQI | GTAC | 3 cut(s) | 403, 460, 781 |
| DdeI | CTNAG | 4 cut(s) | 272, 343, 1044, 1200 |
| DriI | GACNNNNNGTC | 1 cut(s) | 753 |
| EaeI | YGGCCR | 2 cut(s) | 564, 1184 |
| Eam1104I | CTCTTC | 1 cut(s) | 1169 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 753 |
| EarI | CTCTTC | 1 cut(s) | 1169 |
| Eco130I | CCWWGG | 2 cut(s) | 785, 915 |
| Eco47I | GGWCC | 3 cut(s) | 199, 546, 850 |
| EcoRI | GAATTC | 1 cut(s) | 1147 |
| EcoRII | CCWGG | 3 cut(s) | 414, 879, 1052 |
| EcoT14I | CCWWGG | 2 cut(s) | 785, 915 |
| EcoT22I | ATGCAT | 1 cut(s) | 544 |
| ErhI | CCWWGG | 2 cut(s) | 785, 915 |
| FaeI | CATG | 2 cut(s) | 546, 919 |
| FaiI | YATR | 7 cut(s) | 197, 544, 768, 770, 777, 795, 917 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 563, 595 |
| FaqI | GGGAC | 4 cut(s) | 836, 1168, 1174, 1194 |
| FatI | CATG | 2 cut(s) | 542, 915 |
| FauI | CCCGC | 3 cut(s) | 660, 1032, 1105 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| FblI | GTMKAC | 1 cut(s) | 354 |
| FokI | GGATG | 2 cut(s) | 896, 1006 |
| FspBI | CTAG | 2 cut(s) | 365, 786 |
| GlaI | GCGC | 4 cut(s) | 284, 303, 380, 975 |
| GsaI | CCCAGC | 2 cut(s) | 596, 904 |
| GsuI | CTGGAG | 1 cut(s) | 398 |
| HaeIII | GGCC | 6 cut(s) | 566, 597, 842, 879, 980, 1186 |
| HapII | CCGG | 6 cut(s) | 488, 563, 575, 659, 977, 1091 |
| HhaI | GCGC | 4 cut(s) | 285, 304, 381, 976 |
| Hin1I | GRCGYC | 1 cut(s) | 357 |
| Hin1II | CATG | 2 cut(s) | 546, 919 |
| Hin6I | GCGC | 4 cut(s) | 283, 302, 379, 974 |
| HinP1I | GCGC | 4 cut(s) | 283, 302, 379, 974 |
| HincII | GTYRAC | 2 cut(s) | 355, 1197 |
| HindII | GTYRAC | 2 cut(s) | 355, 1197 |
| HindIII | AAGCTT | 1 cut(s) | 653 |
| HinfI | GANTC | 1 cut(s) | 240 |
| HpaI | GTTAAC | 1 cut(s) | 1197 |
| HpaII | CCGG | 6 cut(s) | 488, 563, 575, 659, 977, 1091 |
| HphI | GGTGA | 2 cut(s) | 610, 1124 |
| Hpy166II | GTNNAC | 3 cut(s) | 355, 385, 1197 |
| Hpy188III | TCNNGA | 4 cut(s) | 451, 729, 745, 853 |
| Hpy8I | GTNNAC | 3 cut(s) | 355, 385, 1197 |
| Hpy99I | CGWCG | 8 cut(s) | 173, 176, 356, 359, 437, 468, 536, 692 |
| HpyAV | CCTTC | 3 cut(s) | 517, 532, 991 |
| HpyCH4III | ACNGT | 4 cut(s) | 550, 764, 774, 896 |
| HpyCH4IV | ACGT | 1 cut(s) | 357 |
| HpyCH4V | TGCA | 3 cut(s) | 542, 632, 874 |
| HpyF3I | CTNAG | 4 cut(s) | 272, 343, 1044, 1200 |
| HpySE526I | ACGT | 1 cut(s) | 357 |
| Hsp92I | GRCGYC | 1 cut(s) | 357 |
| Hsp92II | CATG | 2 cut(s) | 546, 919 |
| HspAI | GCGC | 4 cut(s) | 283, 302, 379, 974 |
| KroI | GCCGGC | 1 cut(s) | 976 |
| KroNI | GCCGGC | 1 cut(s) | 978 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| KspAI | GTTAAC | 1 cut(s) | 1197 |
| KspI | CCGCGG | 1 cut(s) | 1101 |
| LmnI | GCTCC | 3 cut(s) | 258, 335, 483 |
| Lsp1109I | GCAGC | 7 cut(s) | 288, 616, 644, 647, 718, 721, 952 |
| LweI | GCATC | 3 cut(s) | 529, 874, 984 |
| MaeI | CTAG | 2 cut(s) | 365, 786 |
| MaeII | ACGT | 1 cut(s) | 357 |
| MaeIII | GTNAC | 1 cut(s) | 231 |
| MbiI | CCGCTC | 1 cut(s) | 229 |
| MboII | GAAGA | 3 cut(s) | 571, 901, 1186 |
| MflI | RGATCY | 2 cut(s) | 268, 339 |
| MhlI | GDGCHC | 3 cut(s) | 519, 1060, 1098 |
| MluCI | AATT | 6 cut(s) | 81, 799, 820, 856, 1126, 1147 |
| MmeI | TCCRAC | 2 cut(s) | 456, 582 |
| Mph1103I | ATGCAT | 1 cut(s) | 544 |
| MroNI | GCCGGC | 1 cut(s) | 976 |
| MseI | TTAA | 1 cut(s) | 1196 |
| MslI | CAYNNNNRTG | 1 cut(s) | 992 |
| MspA1I | CMGCKG | 2 cut(s) | 629, 1100 |
| MspI | CCGG | 6 cut(s) | 488, 563, 575, 659, 977, 1091 |
| MspR9I | CCNGG | 6 cut(s) | 416, 488, 563, 881, 1054, 1091 |
| Mva1269I | GAATGC | 1 cut(s) | 682 |
| MvaI | CCWGG | 3 cut(s) | 416, 881, 1054 |
| MvnI | CGCG | 5 cut(s) | 283, 285, 381, 974, 1100 |
| NaeI | GCCGGC | 1 cut(s) | 978 |
| NciI | CCSGG | 3 cut(s) | 488, 563, 1091 |
| NcoI | CCATGG | 1 cut(s) | 915 |
| NgoMIV | GCCGGC | 1 cut(s) | 976 |
| NlaIII | CATG | 2 cut(s) | 546, 919 |
| NlaIV | GGNNCC | 4 cut(s) | 331, 852, 1059, 1095 |
| NmeAIII | GCCGAG | 3 cut(s) | 250, 271, 538 |
| NsiI | ATGCAT | 1 cut(s) | 544 |
| PaqCI | CACCTGC | 1 cut(s) | 1093 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 243, 510, 734 |
| PctI | GAATGC | 1 cut(s) | 682 |
| PdiI | GCCGGC | 1 cut(s) | 978 |
| PfeI | GAWTC | 1 cut(s) | 240 |
| Ple19I | CGATCG | 1 cut(s) | 165 |
| Psp6I | CCWGG | 3 cut(s) | 414, 879, 1052 |
| PspFI | CCCAGC | 2 cut(s) | 592, 900 |
| PspGI | CCWGG | 3 cut(s) | 414, 879, 1052 |
| PspN4I | GGNNCC | 4 cut(s) | 331, 852, 1059, 1095 |
| PspPI | GGNCC | 4 cut(s) | 199, 546, 595, 850 |
| PstI | CTGCAG | 1 cut(s) | 634 |
| PsuI | RGATCY | 2 cut(s) | 268, 339 |
| PvuI | CGATCG | 1 cut(s) | 165 |
| RgaI | GCGATCGC | 1 cut(s) | 165 |
| RsaI | GTAC | 3 cut(s) | 404, 461, 782 |
| RsaNI | GTAC | 3 cut(s) | 403, 460, 781 |
| RseI | CAYNNNNRTG | 1 cut(s) | 992 |
| SacII | CCGCGG | 1 cut(s) | 1101 |
| SalI | GTCGAC | 1 cut(s) | 353 |
| SaqAI | TTAA | 1 cut(s) | 1196 |
| Sau96I | GGNCC | 4 cut(s) | 199, 546, 595, 850 |
| ScrFI | CCNGG | 6 cut(s) | 416, 488, 563, 881, 1054, 1091 |
| SduI | GDGCHC | 3 cut(s) | 519, 1060, 1098 |
| SfaAI | GCGATCGC | 1 cut(s) | 165 |
| SfaNI | GCATC | 3 cut(s) | 529, 874, 984 |
| SfcI | CTRYAG | 3 cut(s) | 257, 601, 630 |
| Sfr303I | CCGCGG | 1 cut(s) | 1101 |
| SgfI | GCGATCGC | 1 cut(s) | 165 |
| SgrBI | CCGCGG | 1 cut(s) | 1101 |
| SgrDI | CGTCGACG | 1 cut(s) | 353 |
| SinI | GGWCC | 3 cut(s) | 199, 546, 850 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 992 |
| Sse9I | AATT | 6 cut(s) | 81, 799, 820, 856, 1126, 1147 |
| SspMI | CTAG | 2 cut(s) | 365, 786 |
| StyD4I | CCNGG | 6 cut(s) | 414, 486, 561, 879, 1052, 1089 |
| StyI | CCWWGG | 2 cut(s) | 785, 915 |
| TaaI | ACNGT | 4 cut(s) | 550, 764, 774, 896 |
| TaiI | ACGT | 1 cut(s) | 360 |
| TaqI | TCGA | 7 cut(s) | 354, 582, 612, 682, 728, 737, 1145 |
| TasI | AATT | 6 cut(s) | 81, 799, 820, 856, 1126, 1147 |
| TfiI | GAWTC | 1 cut(s) | 240 |
| Tru1I | TTAA | 1 cut(s) | 1196 |
| Tru9I | TTAA | 1 cut(s) | 1196 |
| TseI | GCWGC | 7 cut(s) | 276, 629, 632, 635, 706, 709, 965 |
| VpaK11BI | GGWCC | 3 cut(s) | 199, 546, 850 |
| XapI | RAATTY | 3 cut(s) | 856, 1126, 1147 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 415 |
| XmaJI | CCTAGG | 1 cut(s) | 785 |
| XmiI | GTMKAC | 1 cut(s) | 354 |
| XspI | CTAG | 2 cut(s) | 365, 786 |
| ZraI | GACGTC | 1 cut(s) | 358 |
| Zsp2I | ATGCAT | 1 cut(s) | 544 |