FvH4_5g35420

DnaJ domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
25957288 .. 25958886
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35420.t1

Sequence Viewer

Length: 987 bp
ATGGACAACAATCCGAACAGAGCCGAAGCCGAGCGCTTACTCGGAATCGCCGAAAAGCTCTTAACGAACCGAGATCTAACCAGCTCACGCGACTTCGCCATTCTCGCTCAAGAAACAGAGCCGCTAATTGACGGCTCCGATCAGATCTTGGCCGTCGTCGACGTCCTCTTAGCCGCCGATAAGCGCGTGAACAACCACCACGACTGGTACGCCATTCTCCAGCTGGATCGCCGATCCGACGACCCCGATCTGATCAAGAAGTCGTACCGACGGCTGGCGCTGCTGCTCCACCCGGACAAGAACAAGTACGCCTTCGCCGATCACGCCTTCCGGCTCGTCGCCGATGCATGGGCCGTTCTGTCCGACCCGACCCGGAAGCCGGTGTTCGACACCGAGCTCAACCTCTACAGCCCGGTCGATCTCACCGGCGCGGCCTCAGCTTCCAATCCGAACAAGCTTCCGGTGCGGCGGGGGCAGAATGCTCGAAACGACGGCGGCGTTTCGGAGCCGCAGCAGCAAAATCAACAGAGGTCGAGATTGTCGAGCTTCTGGACGGCGTGTCCTTACTGTTATATACTGTATGAGTACCCTGGGGTTTATGAGAATTGCTGTTTGAGGTGTCAGAACTGTAAGAGAGGGTTCGAAGCCGTGGTGGTTCCGAATTTGCCGCCAATGGTGCATGGCCAGGATGCCTATTACTGCTGCTGGGGATTCTTCCCCATGGGGTATGTTGGTGGCAGCTCAGCCAATAAAGGAAAGGGCAAGGCGGCTGCCGCGGAGGCCTTCCCCGCTTGGATGCCACCAATGTTCAAAACGCCTCCGCCTCAGAATAAAACCCCTGAGCCTTCCAGGGCCTCGCCTGTGCCGCAGCCTGCGCCGGTGGCCGCGGCAAGGGGTGATGGAATGTTGAATTTTTCGGGTGGGAACTCAAATTCGGGGACAGGGACCAATCCGAGGAAGAGGGGGCGGCCGCGGAAGGTAGTTTAG

Protein Analysis

329

Amino Acids

36.22

Weight (kDa)

8.94

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 68 - 130 1.6e-16 DnaJ domain
Zn_ribbon_20 PF23551 183 - 217 3.4e-07 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011428)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 159
AccII CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
AclWI GGATC 2 cut(s) 228, 234
AcoI YGGCCR 4 cut(s) 150, 682, 882, 968
AcsI RAATTY 3 cut(s) 661, 910, 931
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 4 cut(s) 209, 266, 308, 587
AfeI AGCGCT 1 cut(s) 35
AfiI CCNNNNNNNGG 5 cut(s) 274, 348, 379, 891, 954
AgsI TTSAA 2 cut(s) 811, 910
AhdI GACNNNNNGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 589, 684, 848
AluBI AGCT 8 cut(s) 58, 84, 223, 397, 440, 457, 546, 741
AluI AGCT 8 cut(s) 58, 84, 223, 397, 440, 457, 546, 741
Alw21I GWGCWC 1 cut(s) 399
AlwI GGATC 2 cut(s) 228, 234
Aor51HI AGCGCT 1 cut(s) 35
AoxI GGCC 8 cut(s) 150, 351, 432, 682, 780, 852, 882, 968
ApeKI GCWGC 8 cut(s) 280, 283, 511, 514, 702, 738, 770, 868
ApoI RAATTY 3 cut(s) 661, 910, 931
AspLEI GCGC 5 cut(s) 36, 186, 280, 431, 877
AspS9I GGNCC 3 cut(s) 351, 852, 945
AsuC2I CCSGG 3 cut(s) 293, 373, 413
AsuHPI GGTGA 2 cut(s) 415, 908
AsuII TTCGAA 1 cut(s) 642
AvaII GGWCC 1 cut(s) 945
BalI TGGCCA 1 cut(s) 684
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 436
BbvI GCAGC 8 cut(s) 267, 270, 523, 526, 689, 750, 757, 880
BccI CCATC 1 cut(s) 893
BceAI ACGGC 7 cut(s) 137, 148, 287, 338, 508, 570, 632
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 3 cut(s) 591, 686, 850
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 3 cut(s) 293, 373, 413
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 2 cut(s) 37, 281
BglI GCCNNNNNGGC 1 cut(s) 779
BglII AGATCT 2 cut(s) 73, 144
BlpI GCTNAGC 1 cut(s) 742
Bme1390I CCNGG 6 cut(s) 293, 373, 413, 591, 686, 850
Bme18I GGWCC 1 cut(s) 945
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgT120I GGNCC 3 cut(s) 351, 852, 945
BmiI GGNNCC 4 cut(s) 136, 507, 657, 946
BmrFI CCNGG 6 cut(s) 293, 373, 413, 591, 686, 850
BmsI GCATC 3 cut(s) 334, 679, 786
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 2 cut(s) 436, 840
Bpu1102I GCTNAGC 1 cut(s) 742
Bpu14I TTCGAA 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 3 cut(s) 293, 373, 413
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 9 cut(s) 589, 590, 648, 720, 774, 849, 885, 953, 971
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 5 cut(s) 274, 348, 379, 891, 954
Bse118I RCCGGY 3 cut(s) 379, 425, 877
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 3 cut(s) 591, 686, 850
BseDI CCNNGG 9 cut(s) 589, 590, 648, 720, 774, 849, 885, 953, 971
BseGI GGATG 2 cut(s) 694, 801
BseLI CCNNNNNNNGG 5 cut(s) 274, 348, 379, 891, 954
BseMII CTCAG 4 cut(s) 450, 756, 831, 839
BseNI ACTGG 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 968
BseXI GCAGC 8 cut(s) 267, 270, 523, 526, 689, 750, 757, 880
BseYI CCCAGC 1 cut(s) 705
Bsh1236I CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
Bsh1285I CGRYCG 2 cut(s) 417, 971
BshFI GGCC 8 cut(s) 152, 353, 434, 684, 782, 854, 884, 970
BsiEI CGRYCG 2 cut(s) 417, 971
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 8 cut(s) 293, 331, 373, 380, 413, 426, 461, 878
BslFI GGGAC 2 cut(s) 952, 958
BslI CCNNNNNNNGG 5 cut(s) 274, 348, 379, 891, 954
BsmFI GGGAC 2 cut(s) 952, 958
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 8 cut(s) 152, 353, 434, 684, 782, 854, 884, 970
Bsp119I TTCGAA 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
Bsp1720I GCTNAGC 1 cut(s) 742
Bsp19I CCATGG 1 cut(s) 720
BspANI GGCC 8 cut(s) 152, 353, 434, 684, 782, 854, 884, 970
BspCNI CTCAG 4 cut(s) 449, 755, 832, 838
BspFNI CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
BspLI GGNNCC 4 cut(s) 136, 507, 657, 946
BspPI GGATC 2 cut(s) 228, 234
BspT104I TTCGAA 1 cut(s) 642
BsrFI RCCGGY 3 cut(s) 379, 425, 877
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 3 cut(s) 379, 425, 877
BssECI CCNNGG 9 cut(s) 589, 590, 648, 720, 774, 849, 885, 953, 971
BssMI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 3 cut(s) 591, 686, 850
Bst4CI ACNGT 3 cut(s) 569, 579, 629
Bst6I CTCTTC 1 cut(s) 953
BstACI GRCGYC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 276, 873
BstDEI CTNAG 5 cut(s) 169, 436, 742, 825, 840
BstDSI CCRYGG 5 cut(s) 648, 720, 774, 885, 971
BstF5I GGATG 2 cut(s) 694, 801
BstFNI CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
BstH2I RGCGCY 2 cut(s) 37, 281
BstHHI GCGC 5 cut(s) 36, 186, 280, 431, 877
BstKTI GATC 9 cut(s) 76, 142, 147, 229, 236, 250, 255, 322, 421
BstMBI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
BstMCI CGRYCG 2 cut(s) 417, 971
BstNI CCWGG 3 cut(s) 591, 686, 850
BstSCI CCNGG 6 cut(s) 291, 371, 411, 589, 684, 848
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
BstV1I GCAGC 8 cut(s) 267, 270, 523, 526, 689, 750, 757, 880
BstX2I RGATCY 2 cut(s) 73, 144
BstYI RGATCY 2 cut(s) 73, 144
BstZI CGGCCG 1 cut(s) 968
BsuRI GGCC 8 cut(s) 152, 353, 434, 684, 782, 854, 884, 970
BtgI CCRYGG 5 cut(s) 648, 720, 774, 885, 971
BtsCI GGATG 2 cut(s) 694, 801
Cac8I GCNNGC 2 cut(s) 276, 873
CciNI GCGGCCGC 1 cut(s) 968
CfoI GCGC 5 cut(s) 36, 186, 280, 431, 877
Cfr10I RCCGGY 3 cut(s) 379, 425, 877
Cfr13I GGNCC 3 cut(s) 351, 852, 945
Cfr42I CCGCGG 3 cut(s) 777, 888, 974
Csp6I GTAC 4 cut(s) 208, 265, 307, 586
CviAII CATG 3 cut(s) 348, 680, 721
CviQI GTAC 4 cut(s) 208, 265, 307, 586
DdeI CTNAG 5 cut(s) 169, 436, 742, 825, 840
DpnI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 321, 420
DpnII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
DriI GACNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 4 cut(s) 150, 682, 882, 968
EagI CGGCCG 1 cut(s) 968
Eam1104I CTCTTC 1 cut(s) 953
Eam1105I GACNNNNNGTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 953
EciI GGCGGA 1 cut(s) 810
Ecl136II GAGCTC 1 cut(s) 397
EclXI CGGCCG 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 782
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 945
Eco47III AGCGCT 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 968
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 852
EcoRII CCWGG 3 cut(s) 589, 684, 848
EcoT14I CCWWGG 1 cut(s) 720
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 3 cut(s) 351, 683, 724
FaiI YATR 8 cut(s) 349, 573, 575, 582, 600, 681, 722, 729
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 2 cut(s) 952, 958
FatI CATG 3 cut(s) 347, 679, 720
FauI CCCGC 2 cut(s) 462, 796
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 159
FokI GGATG 2 cut(s) 701, 808
FriOI GRGCYC 1 cut(s) 399
GlaI GCGC 5 cut(s) 35, 185, 279, 430, 876
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 2 cut(s) 37, 281
HaeIII GGCC 8 cut(s) 152, 353, 434, 684, 782, 854, 884, 970
HapII CCGG 8 cut(s) 293, 331, 373, 380, 413, 426, 461, 878
HhaI GCGC 5 cut(s) 36, 186, 280, 431, 877
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 351, 683, 724
Hin6I GCGC 5 cut(s) 34, 184, 278, 429, 875
HinP1I GCGC 5 cut(s) 34, 184, 278, 429, 875
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 45, 711
HpaII CCGG 8 cut(s) 293, 331, 373, 380, 413, 426, 461, 878
HphI GGTGA 2 cut(s) 415, 908
Hpy166II GTNNAC 2 cut(s) 160, 190
Hpy188III TCNNGA 4 cut(s) 110, 256, 534, 550
Hpy8I GTNNAC 2 cut(s) 160, 190
Hpy99I CGWCG 7 cut(s) 158, 161, 164, 242, 273, 341, 494
HpyAV CCTTC 5 cut(s) 322, 337, 793, 855, 970
HpyCH4III ACNGT 3 cut(s) 569, 579, 629
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 347, 679
HpyF3I CTNAG 5 cut(s) 169, 436, 742, 825, 840
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 351, 683, 724
HspAI GCGC 5 cut(s) 34, 184, 278, 429, 875
Ksp22I TGATCA 1 cut(s) 252
KspI CCGCGG 3 cut(s) 777, 888, 974
Kzo9I GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
LmnI GCTCC 3 cut(s) 140, 291, 505
Lsp1109I GCAGC 8 cut(s) 267, 270, 523, 526, 689, 750, 757, 880
LweI GCATC 3 cut(s) 334, 679, 786
MaeII ACGT 1 cut(s) 162
MalI GATC 9 cut(s) 75, 141, 146, 228, 235, 249, 254, 321, 420
MboI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
MboII GAAGA 2 cut(s) 706, 970
MflI RGATCY 2 cut(s) 73, 144
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 5 cut(s) 126, 604, 661, 910, 931
MluNI TGGCCA 1 cut(s) 684
MmeI TCCRAC 2 cut(s) 261, 387
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 684
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 4 cut(s) 223, 776, 887, 973
MspI CCGG 8 cut(s) 293, 331, 373, 380, 413, 426, 461, 878
MspR9I CCNGG 6 cut(s) 293, 373, 413, 591, 686, 850
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 3 cut(s) 591, 686, 850
MvnI CGCG 6 cut(s) 90, 186, 431, 776, 887, 973
NciI CCSGG 3 cut(s) 293, 373, 413
NcoI CCATGG 1 cut(s) 720
NdeII GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
NlaIII CATG 3 cut(s) 351, 683, 724
NlaIV GGNNCC 4 cut(s) 136, 507, 657, 946
NmeAIII GCCGAG 1 cut(s) 55
NotI GCGGCCGC 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 349
NspV TTCGAA 1 cut(s) 642
PasI CCCWGGG 1 cut(s) 590
PceI AGGCCT 1 cut(s) 782
PcsI WCGNNNNNNNCGW 4 cut(s) 48, 315, 495, 539
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 45, 711
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 3 cut(s) 589, 684, 848
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 3 cut(s) 589, 684, 848
PspN4I GGNNCC 4 cut(s) 136, 507, 657, 946
PspPI GGNCC 3 cut(s) 351, 852, 945
PsuI RGATCY 2 cut(s) 73, 144
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 4 cut(s) 209, 266, 308, 587
RsaNI GTAC 4 cut(s) 208, 265, 307, 586
SacI GAGCTC 1 cut(s) 399
SacII CCGCGG 3 cut(s) 777, 888, 974
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 9 cut(s) 73, 139, 144, 226, 233, 247, 252, 319, 418
Sau96I GGNCC 3 cut(s) 351, 852, 945
ScrFI CCNGG 6 cut(s) 293, 373, 413, 591, 686, 850
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 3 cut(s) 334, 679, 786
SfcI CTRYAG 1 cut(s) 406
Sfr303I CCGCGG 3 cut(s) 777, 888, 974
SfuI TTCGAA 1 cut(s) 642
SgrAI CRCCGGYG 2 cut(s) 425, 877
SgrBI CCGCGG 3 cut(s) 777, 888, 974
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 5 cut(s) 126, 604, 661, 910, 931
SseBI AGGCCT 1 cut(s) 782
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 6 cut(s) 291, 371, 411, 589, 684, 848
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 3 cut(s) 569, 579, 629
TaiI ACGT 1 cut(s) 165
TaqI TCGA 7 cut(s) 159, 387, 417, 484, 533, 542, 642
TasI AATT 5 cut(s) 126, 604, 661, 910, 931
TfiI GAWTC 2 cut(s) 45, 711
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 8 cut(s) 280, 283, 511, 514, 702, 738, 770, 868
VpaK11BI GGWCC 1 cut(s) 945
XapI RAATTY 3 cut(s) 661, 910, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 159
ZraI GACGTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.