Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Forward (+)

841246 .. 843629

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAATTCTCTTCATCGTGTAGTAGGATTGATCAGCAGAACGACGACTACATCTCCAATTTCTCATACCCGTTTCAATCTCCCATCGATTCTCGTCAATTTGATGTCCACAAAATCTGGAAACGATGAAGACAAATGGAACGACGCTTGGGAATCAGCTTGGTTACCAGATGATCTCACAGATAAAATCCGAGCACCATGGGAGAGAGATGTGAACTTCCCTGTAAAAGAATCAACGGCGACGGCGATTGAAGAAATCGATGTGGAAGCAAAAGCGTTCGTAGAGGATATGAATGAGCATTGGGACGAGAGGAGAGGGAAGAGTGGGAAAGTGGAGAAGAGAGAAGAGAAGAAGAAAGAGATTGGAGATGGAGAAGATGAATCATCATCATCGCTTTATAGTTTGGAGACGATGAAGAAGGATTATAGGTTGAAGAAACAAAGAGTTCATGCTTCTCTGTGGGTTAAAGAGATTGAGAAATTGGAAGAAGCTAAATTGGATGATTCTGGATCTGGTGGTGGAGCTGATGATATTGATAGGCTTCTTGATAGTTGCTCAGAGATTTTCGATTCGGTAGACCATGATTTTGACAAATTAGAGGTTTCGAGTGGATCTGAATTGAAGAATAAGCCTGATGGTTGGGAATCAACAGCAAAGGAACAAGATGGAAACCTCTGGGAGATGTCACAAAGAGAAGAAGACATTCTTCTCCAAGAATTTGATCGTCGCACTGCCTTCTGCAAATTTCAGATAGCTAGTTTTATAAAGCAACACATATTCAGTAGGAGAAGACCGATTGATGGGTGGAAATACATGATTGAAGTGATTGGTCCAAATGCGAGGAAAGGGAAAGGAAGTGTTTCTAGGCTCCCGGCTTTATCGGATGTGTCGACTCAGCCGTTTAAAGAAGAAACCAGCAGTCTCACTACCTTGAAGCGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.96

Weight (kDa)

5.2

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	764
AccI	GTMKAC	2 cut(s)	576, 890
AclWI	GGATC	2 cut(s)	517, 619
AcsI	RAATTY	3 cut(s)	4, 716, 743
AfiI	CCNNNNNNNGG	1 cut(s)	800
AgsI	TTSAA	6 cut(s)	76, 251, 433, 622, 821, 934
AluBI	AGCT	4 cut(s)	158, 491, 524, 755
AluI	AGCT	4 cut(s)	158, 491, 524, 755
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	401, 926
AlwI	GGATC	2 cut(s)	517, 619
ApoI	RAATTY	3 cut(s)	4, 716, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
Asp700I	GAANNNNTTC	2 cut(s)	702, 859
AspS9I	GGNCC	1 cut(s)	830
AsuC2I	CCSGG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	830
BbsI	GAAGAC	3 cut(s)	135, 705, 796
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	5 cut(s)	91, 362, 629, 659, 794
BceAI	ACGGC	3 cut(s)	252, 258, 883
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	2 cut(s)	401, 926
BfaI	CTAG	2 cut(s)	756, 864
Bme1390I	CCNGG	1 cut(s)	872
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	1 cut(s)	869
BmrFI	CCNGG	1 cut(s)	872
BpiI	GAAGAC	3 cut(s)	135, 705, 796
BpuMI	CCSGG	1 cut(s)	872
Bsa29I	ATCGAT	2 cut(s)	86, 258
BsaJI	CCNNGG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
BseCI	ATCGAT	2 cut(s)	86, 258
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	505, 889
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	570, 908
BseRI	GAGGAG	1 cut(s)	325
BshVI	ATCGAT	2 cut(s)	86, 258
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	401, 926
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	30, 172, 509, 611, 721
Bsp19I	CCATGG	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	569, 907
BspDI	ATCGAT	2 cut(s)	86, 258
BspLI	GGNNCC	1 cut(s)	869
BspPI	GGATC	2 cut(s)	517, 619
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	5 cut(s)	30, 172, 509, 611, 721
BssT1I	CCWWGG	1 cut(s)	197
Bst6I	CTCTTC	4 cut(s)	15, 314, 332, 339
BstDEI	CTNAG	2 cut(s)	556, 894
BstDSI	CCRYGG	1 cut(s)	197
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	505, 889
BstKTI	GATC	5 cut(s)	33, 175, 512, 614, 724
BstMAI	GTCTC	2 cut(s)	401, 926
BstMBI	GATC	5 cut(s)	30, 172, 509, 611, 721
BstPI	GGTNACC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	870
BstV2I	GAAGAC	3 cut(s)	135, 705, 796
BstX2I	RGATCY	2 cut(s)	509, 611
BstYI	RGATCY	2 cut(s)	509, 611
Bsu15I	ATCGAT	2 cut(s)	86, 258
BsuTUI	ATCGAT	2 cut(s)	86, 258
BtgI	CCRYGG	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	505, 889
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
Cfr13I	GGNCC	1 cut(s)	830
ClaI	ATCGAT	2 cut(s)	86, 258
CseI	GACGC	2 cut(s)	152, 926
CviAII	CATG	4 cut(s)	198, 449, 581, 814
CviJI	RGCY	9 cut(s)	158, 491, 524, 541, 631, 755, 868, 875, 898
CviKI_1	RGCY	9 cut(s)	158, 491, 524, 541, 631, 755, 868, 875, 898
DdeI	CTNAG	2 cut(s)	556, 894
DpnI	GATC	5 cut(s)	32, 174, 511, 613, 723
DpnII	GATC	5 cut(s)	30, 172, 509, 611, 721
DraI	TTTAAA	1 cut(s)	904
Eam1104I	CTCTTC	4 cut(s)	15, 314, 332, 339
EarI	CTCTTC	4 cut(s)	15, 314, 332, 339
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	830
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	4 cut(s)	201, 452, 584, 817
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	197, 448, 580, 813
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	2 cut(s)	576, 890
FokI	GGATG	2 cut(s)	512, 896
FspBI	CTAG	2 cut(s)	756, 864
HapII	CCGG	1 cut(s)	872
HgaI	GACGC	2 cut(s)	152, 926
Hin1II	CATG	4 cut(s)	201, 452, 584, 817
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	8 cut(s)	88, 152, 230, 380, 503, 569, 644, 892
HpaII	CCGG	1 cut(s)	872
Hpy166II	GTNNAC	4 cut(s)	108, 214, 577, 891
Hpy188I	TCNGA	5 cut(s)	191, 559, 616, 750, 883
Hpy188III	TCNNGA	3 cut(s)	117, 507, 545
Hpy8I	GTNNAC	4 cut(s)	108, 214, 577, 891
Hpy99I	CGWCG	5 cut(s)	46, 146, 244, 729, 942
HpyAV	CCTTC	2 cut(s)	412, 745
HpyCH4V	TGCA	1 cut(s)	741
HpyF3I	CTNAG	2 cut(s)	556, 894
Hsp92II	CATG	4 cut(s)	201, 452, 584, 817
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	5 cut(s)	30, 172, 509, 611, 721
LmnI	GCTCC	2 cut(s)	521, 873
LpnPI	CCDG	9 cut(s)	102, 180, 234, 492, 498, 645, 661, 885, 928
MaeI	CTAG	2 cut(s)	756, 864
MaeIII	GTNAC	2 cut(s)	162, 684
MalI	GATC	5 cut(s)	32, 174, 511, 613, 723
MboI	GATC	5 cut(s)	30, 172, 509, 611, 721
MflI	RGATCY	2 cut(s)	509, 611
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	9 cut(s)	4, 57, 97, 479, 494, 593, 617, 716, 743
MlyI	GAGTC	1 cut(s)	886
MnlI	CCTC	6 cut(s)	277, 303, 308, 592, 683, 834
MroXI	GAANNNNTTC	2 cut(s)	702, 859
MseI	TTAA	2 cut(s)	465, 903
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	1 cut(s)	872
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	30, 172, 509, 611, 721
NlaIII	CATG	4 cut(s)	201, 452, 584, 817
NlaIV	GGNNCC	1 cut(s)	869
NmuCI	GTSAC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	3 cut(s)	242, 887, 896
PdmI	GAANNNNTTC	2 cut(s)	702, 859
PfeI	GAWTC	7 cut(s)	88, 152, 230, 380, 503, 569, 644
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PsiI	TTATAA	1 cut(s)	764
PspEI	GGTNACC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	869
PspPI	GGNCC	1 cut(s)	830
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PsuI	RGATCY	2 cut(s)	509, 611
SalI	GTCGAC	1 cut(s)	889
SaqAI	TTAA	2 cut(s)	465, 903
Sau3AI	GATC	5 cut(s)	30, 172, 509, 611, 721
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	8 cut(s)	160, 431, 493, 526, 603, 675, 757, 932
SinI	GGWCC	1 cut(s)	830
Sse9I	AATT	9 cut(s)	4, 57, 97, 479, 494, 593, 617, 716, 743
SspMI	CTAG	2 cut(s)	756, 864
StyD4I	CCNGG	1 cut(s)	870
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	5 cut(s)	86, 258, 567, 605, 890
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	9 cut(s)	4, 57, 97, 479, 494, 593, 617, 716, 743
TfiI	GAWTC	7 cut(s)	88, 152, 230, 380, 503, 569, 644
Tru1I	TTAA	2 cut(s)	465, 903
Tru9I	TTAA	2 cut(s)	465, 903
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	684
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	6 cut(s)	17, 141, 305, 393, 428, 437
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	3 cut(s)	4, 716, 743
XmiI	GTMKAC	2 cut(s)	576, 890
XmnI	GAANNNNTTC	2 cut(s)	702, 859
XspI	CTAG	2 cut(s)	756, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.