Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

4292928 .. 4295123

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTTTTGAGGTTTGGCCCAATATATCATTTCAAAGCCATTGAAATACTTGGGCTTTTGGTTAGGCCCGTATGCTCTTGTTCCTCTCTGCGTCCCCGTCTCTCTCAGAACAAGGGGTTTATGCTTCCATTTCTGCGATTCTCTCCAGTTCTCTCCACCGATTCCACAAACCATGCAAGCCTTAAACGCATAGCAACAAAGACCGAGCTCCGCCGACTTTCGTCCACAATCGCCAAAACCCAATTCATTTCAGCCGCCAATCTCCGAACCTTCTCCTCCAACTCAAAGAAAGGCGGCGGCGACGACGACTGGAACGACGCGTGGGAGACGGCGTGGATCCCACCCGACCTCTCGGGAAACAACAGCAGAGCTCCATGGGAGACCGACGTCAATTTCTCGTCTCCCGAGTCGAGCATCGTGCTTCCGTCGGACGCCGACCCCGAGACGATGGCCTTCGTGGAGGACATGAACGAGAATTGGAACGGGAGGCGGAAACCCAAAGAGGAAAGGAAGCAGAATCAGCAGAGTGAGAGTGGGTCGTCGCTTTATAGCTTGGAGAGCTTGAAGAAGGACTATCGGCTGAAGAAACAGAAGATTCACGCTGGGCTTTGGATGAAGGAGATTGAGAAGCAGGAGGAGGCTAAATTGGCCAACTCGAATTCGATTGGCGGTGGCGACGACATCGAGCGATTGCTCGATAGTTGCTCTGACATTTTTGACTCCCCTAACAACGATTTGGAGAACTCTAAAGCACCGAGTGCTTCTGACTACAAAAACAAACCTGATGGTTGGGAAACTACATCTAAGGCTCAGGAGGGAAATATATGGGAGATGACGCAGAGAGAAGAAGATATTCTTCTTCAAGAGTTTGAGCGTCGGATTGCATACAATAAATTTCAGATTGCTAGCTTTATCAAGACTCACATATTTAGCCGGAGGAGACCGATTGATGGGTGGAAATACATGATAGAGGAGTTAGGGCCGAATGCGAGGAAAGGGAAGGGTTCTGTTTCAAGGCTACCAAGTCTATCCGATGCATCGACCCAACCCTTCAAGGAGGAGAAGACTCCAATGAGCAGCAGCAGTCTTTCCCCGTATAAGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.88

Weight (kDa)

8.24

Isoelectric Point (pI)

70.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccII	CGCG	1 cut(s)	320
AciI	CCGC	6 cut(s)	211, 255, 294, 297, 490, 669
AclWI	GGATC	2 cut(s)	331, 344
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	658, 893
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	2 cut(s)	387, 432
AdeI	CACNNNGTG	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	950, 1099
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	6 cut(s)	34, 44, 565, 863, 1014, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	208, 371, 552, 561, 909
AluI	AGCT	5 cut(s)	208, 371, 552, 561, 909
Alw21I	GWGCWC	2 cut(s)	210, 373
Alw26I	GTCTC	6 cut(s)	104, 320, 374, 405, 437, 934
AlwI	GGATC	2 cut(s)	331, 344
Ama87I	CYCGRG	3 cut(s)	352, 404, 440
AoxI	GGCC	5 cut(s)	16, 65, 450, 648, 980
ApeKI	GCWGC	2 cut(s)	1077, 1080
ApoI	RAATTY	2 cut(s)	658, 893
Asp700I	GAANNNNTTC	1 cut(s)	852
AspS9I	GGNCC	3 cut(s)	17, 66, 980
AsuNHI	GCTAGC	1 cut(s)	905
AvaI	CYCGRG	3 cut(s)	352, 404, 440
BalI	TGGCCA	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	336
BanII	GRGCYC	2 cut(s)	210, 373
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	2 cut(s)	210, 373
BbvI	GCAGC	2 cut(s)	1089, 1092
BccI	CCATC	3 cut(s)	442, 779, 944
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BcoDI	GTCTC	6 cut(s)	104, 320, 374, 405, 437, 934
BfaI	CTAG	1 cut(s)	906
BisI	GCNGC	5 cut(s)	255, 295, 298, 1078, 1081
BlsI	GCNGC	5 cut(s)	256, 296, 299, 1079, 1082
BmeT110I	CYCGRG	3 cut(s)	352, 404, 440
BmgT120I	GGNCC	3 cut(s)	17, 66, 980
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	3 cut(s)	423, 1024, 1046
BmtI	GCTAGC	1 cut(s)	909
BoxI	GACNNNNGTC	2 cut(s)	220, 386
BpiI	GAAGAC	1 cut(s)	1070
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	810
BsaHI	GRCGYC	2 cut(s)	387, 432
BsaI	GGTCTC	2 cut(s)	374, 934
BsaJI	CCNNGG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	950, 1099
Bse1I	ACTGG	2 cut(s)	146, 314
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	950, 1099
BseMII	CTCAG	2 cut(s)	119, 824
BseNI	ACTGG	2 cut(s)	146, 314
BseRI	GAGGAG	5 cut(s)	265, 650, 952, 986, 1073
BseXI	GCAGC	2 cut(s)	1089, 1092
BseYI	CCCAGC	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	5 cut(s)	18, 67, 452, 650, 982
BsiHKAI	GWGCWC	2 cut(s)	210, 373
BsiHKCI	CYCGRG	3 cut(s)	352, 404, 440
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	950, 1099
BsmAI	GTCTC	6 cut(s)	104, 320, 374, 405, 437, 934
BsmBI	CGTCTC	4 cut(s)	104, 320, 405, 437
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	991
BsnI	GGCC	5 cut(s)	18, 67, 452, 650, 982
Bso31I	GGTCTC	2 cut(s)	374, 934
BsoBI	CYCGRG	3 cut(s)	352, 404, 440
Bsp1286I	GDGCHC	2 cut(s)	210, 373
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	374
BspACI	CCGC	6 cut(s)	211, 255, 294, 297, 490, 669
BspANI	GGCC	5 cut(s)	18, 67, 452, 650, 982
BspCNI	CTCAG	2 cut(s)	118, 823
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	338
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	2 cut(s)	331, 344
BspTNI	GGTCTC	2 cut(s)	374, 934
BsrI	ACTGG	2 cut(s)	146, 314
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	2 cut(s)	387, 432
BssT1I	CCWWGG	1 cut(s)	374
BstACI	GRCGYC	2 cut(s)	387, 432
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	178, 907
BstDEI	CTNAG	3 cut(s)	105, 804, 810
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	618
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	6 cut(s)	104, 320, 374, 405, 437, 934
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 520, 558, 647, 758
BstPAI	GACNNNNGTC	2 cut(s)	220, 386
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	1089, 1092
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	5 cut(s)	18, 67, 452, 650, 982
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	178, 907
Cfr13I	GGNCC	3 cut(s)	17, 66, 980
CseI	GACGC	5 cut(s)	80, 326, 440, 844, 863
CviAII	CATG	4 cut(s)	173, 375, 466, 964
DdeI	CTNAG	3 cut(s)	105, 804, 810
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DraIII	CACNNNGTG	1 cut(s)	758
EaeI	YGGCCR	1 cut(s)	648
EciI	GGCGGA	2 cut(s)	200, 505
Ecl136II	GAGCTC	2 cut(s)	208, 371
Eco130I	CCWWGG	1 cut(s)	374
Eco24I	GRGCYC	2 cut(s)	210, 373
Eco31I	GGTCTC	2 cut(s)	374, 934
Eco53kI	GAGCTC	2 cut(s)	208, 371
Eco57I	CTGAAG	1 cut(s)	602
Eco88I	CYCGRG	3 cut(s)	352, 404, 440
EcoICRI	GAGCTC	2 cut(s)	208, 371
EcoRI	GAATTC	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	2 cut(s)	210, 373
ErhI	CCWWGG	1 cut(s)	374
Esp3I	CGTCTC	4 cut(s)	104, 320, 405, 437
FaeI	CATG	4 cut(s)	176, 378, 469, 967
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	4 cut(s)	172, 374, 465, 963
Fnu4HI	GCNGC	5 cut(s)	255, 295, 298, 1078, 1081
FokI	GGATG	1 cut(s)	625
FriOI	GRGCYC	2 cut(s)	210, 373
Fsp4HI	GCNGC	5 cut(s)	255, 295, 298, 1078, 1081
FspBI	CTAG	1 cut(s)	906
GluI	GCNGC	5 cut(s)	255, 295, 298, 1078, 1081
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	5 cut(s)	18, 67, 452, 650, 982
HapII	CCGG	1 cut(s)	934
HgaI	GACGC	5 cut(s)	80, 326, 440, 844, 863
Hin1I	GRCGYC	2 cut(s)	387, 432
Hin1II	CATG	4 cut(s)	176, 378, 469, 967
HinfI	GANTC	8 cut(s)	138, 161, 407, 517, 595, 719, 919, 1066
HpaII	CCGG	1 cut(s)	934
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	8 cut(s)	108, 266, 430, 709, 766, 879, 900, 1033
Hpy188III	TCNNGA	5 cut(s)	354, 404, 812, 863, 916
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	8 cut(s)	305, 308, 320, 389, 430, 544, 680, 879
HpyAV	CCTTC	6 cut(s)	280, 463, 562, 610, 994, 1060
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	176, 884, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 520, 558, 647, 758
HpyF3I	CTNAG	3 cut(s)	105, 804, 810
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	2 cut(s)	387, 432
Hsp92II	CATG	4 cut(s)	176, 378, 469, 967
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	213, 376
LpnPI	CCDG	7 cut(s)	159, 295, 588, 617, 795, 797, 947
Lsp1109I	GCAGC	2 cut(s)	1089, 1092
LweI	GCATC	3 cut(s)	423, 1024, 1046
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	1 cut(s)	387
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	8 cut(s)	577, 595, 604, 848, 851, 857, 860, 1075
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	210, 373
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	6 cut(s)	242, 391, 475, 644, 658, 893
MluI	ACGCGT	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	4 cut(s)	416, 713, 913, 1060
MmeI	TCCRAC	3 cut(s)	303, 408, 857
Mox20I	TGGCCA	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	1 cut(s)	934
Mva1269I	GAATGC	1 cut(s)	991
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	5 cut(s)	186, 520, 558, 647, 758
NcoI	CCATGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	4 cut(s)	176, 378, 469, 967
NlaIV	GGNNCC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	1039
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 438
PctI	GAATGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	4 cut(s)	138, 161, 517, 595
PkrI	GCNGC	5 cut(s)	256, 296, 299, 1079, 1082
PleI	GAGTC	4 cut(s)	415, 713, 913, 1060
PpsI	GAGTC	4 cut(s)	415, 713, 913, 1060
PshAI	GACNNNNGTC	2 cut(s)	220, 386
Psp124BI	GAGCTC	2 cut(s)	210, 373
PspFI	CCCAGC	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	3 cut(s)	17, 66, 980
PsuI	RGATCY	1 cut(s)	336
SacI	GAGCTC	2 cut(s)	210, 373
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	255, 295, 298, 1078, 1081
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	3 cut(s)	17, 66, 980
SchI	GAGTC	4 cut(s)	416, 713, 913, 1060
SduI	GDGCHC	2 cut(s)	210, 373
SfaNI	GCATC	3 cut(s)	423, 1024, 1046
Sse9I	AATT	6 cut(s)	242, 391, 475, 644, 658, 893
SsiI	CCGC	6 cut(s)	211, 255, 294, 297, 490, 669
SspMI	CTAG	1 cut(s)	906
SstI	GAGCTC	2 cut(s)	210, 373
StyI	CCWWGG	1 cut(s)	374
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	6 cut(s)	410, 656, 662, 684, 696, 1040
TaqII	GACCGA	3 cut(s)	218, 398, 958
TasI	AATT	6 cut(s)	242, 391, 475, 644, 658, 893
TauI	GCSGC	3 cut(s)	257, 297, 300
TfiI	GAWTC	4 cut(s)	138, 161, 517, 595
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	1077, 1080
TspDTI	ATGAA	3 cut(s)	235, 482, 629
TspGWI	ACGGA	1 cut(s)	414
XapI	RAATTY	2 cut(s)	658, 893
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	906
ZraI	GACGTC	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.