Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

5245394 .. 5248849

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1075100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCAAACCCTTAAACGCATAGCAACACAGACCGAGCTCCACCGACTCTCGTCCACAATCGCCAAAACCCAATTCATTTCAGCCGCCAATCTCCGAGCCTTTTCCTCCAACTCAAAGAAAGGCGGCGGCGGCGACGACGACTGGAACGACGCGTGGGAGACGGCGTGGCTCCCACCCGACCTCTCGGGAAACAACAGCAGAGCTCCATGGGAGACCGACGTCAATTTCTCGTCTCCCGAGTCGAGCATCGTGCTTCCGTCGGACGCCGACCCCGAGACGAAGGCGTTCGTGGAGGACATGAATGAGAATTGGAACGAGAGGCGGAAACCCAAAGAGGAAAGGAAGCAGTATCGGCAGAGCCAGAGTGGGTCGTCGCTTTATAGCTTGGAGAGCTTGAAGAAGGACTATCGGGTGAAGAAACAGAGGATTCACGCTGGCCTTTGGATGAAGGAGATTGAGAAGCAGGAGGAGGCTAAATTGGTCGACTCGAATTCGATTGGCGGGGGTGACGACATCGAGCGATTGCTCGATAGTTGCGCTGACATTTTTGACTCCCCTAACAACGATTTGGAGAACTCTAAAGCTCCGAGTGCTTCTGACCACAAAAACAAACCTGATGGTTGGGAAACTACATCCAAGGCTGCAGAGGGAAATATATGGGAGATGACACAGAGAGAAGAAGATATACTTCTTCAAGAGTTTGAGCGTCGGATTGCATACAATAAATTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGCCGGAGGAGACCAATTGATGGGTGGAAATACATGATAGAGGAGTTAGGGCCAAATGCGAGGAAAGGAAAGGGTTCTGTTTCCAGGCTACCAAGTCTATCCGATGCGTCAACCCAACCCTTCAAGGAGGAGAAGACTCTGATGAGCAGCAGCAGTCTTTCATCCTATAAGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.59

Weight (kDa)

5.8

Isoelectric Point (pI)

67.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	152
AciI	CCGC	6 cut(s)	84, 123, 126, 129, 322, 501
AcsI	RAATTY	2 cut(s)	490, 725
AcyI	GRCGYC	2 cut(s)	219, 264
AfiI	CCNNNNNNNGG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	397, 695, 886
AjnI	CCWGG	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	5 cut(s)	37, 203, 384, 393, 584
AluI	AGCT	5 cut(s)	37, 203, 384, 393, 584
Alw21I	GWGCWC	2 cut(s)	39, 205
Alw26I	GTCTC	5 cut(s)	152, 206, 237, 269, 766
Ama87I	CYCGRG	3 cut(s)	184, 236, 272
AoxI	GGCC	2 cut(s)	436, 812
ApeKI	GCWGC	3 cut(s)	641, 909, 912
ApoI	RAATTY	2 cut(s)	490, 725
Asp700I	GAANNNNTTC	2 cut(s)	284, 835
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	1 cut(s)	812
AsuHPI	GGTGA	2 cut(s)	424, 518
AvaI	CYCGRG	3 cut(s)	184, 236, 272
BanII	GRGCYC	2 cut(s)	39, 205
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
BbsI	GAAGAC	1 cut(s)	902
Bbv12I	GWGCWC	2 cut(s)	39, 205
BbvI	GCAGC	3 cut(s)	628, 921, 924
BccI	CCATC	2 cut(s)	611, 776
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	1 cut(s)	847
BcoDI	GTCTC	5 cut(s)	152, 206, 237, 269, 766
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	7 cut(s)	84, 124, 127, 130, 642, 910, 913
BlsI	GCNGC	7 cut(s)	85, 125, 128, 131, 643, 911, 914
Bme1390I	CCNGG	1 cut(s)	847
BmeT110I	CYCGRG	3 cut(s)	184, 236, 272
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	847
BmsI	GCATC	2 cut(s)	255, 856
BoxI	GACNNNNGTC	2 cut(s)	49, 218
BpiI	GAAGAC	1 cut(s)	902
BsaHI	GRCGYC	2 cut(s)	219, 264
BsaI	GGTCTC	2 cut(s)	206, 766
BsaJI	CCNNGG	2 cut(s)	206, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	2 cut(s)	206, 636
BseGI	GGATG	3 cut(s)	450, 632, 923
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	4 cut(s)	482, 784, 818, 905
BseXI	GCAGC	3 cut(s)	628, 921, 924
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	438, 814
BsiHKAI	GWGCWC	2 cut(s)	39, 205
BsiHKCI	CYCGRG	3 cut(s)	184, 236, 272
BsiSI	CCGG	1 cut(s)	766
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	5 cut(s)	152, 206, 237, 269, 766
BsmBI	CGTCTC	3 cut(s)	152, 237, 269
BsnI	GGCC	2 cut(s)	438, 814
Bso31I	GGTCTC	2 cut(s)	206, 766
BsoBI	CYCGRG	3 cut(s)	184, 236, 272
Bsp1286I	GDGCHC	2 cut(s)	39, 205
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	6 cut(s)	84, 123, 126, 129, 322, 501
BspANI	GGCC	2 cut(s)	438, 814
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	646
BspTNI	GGTCTC	2 cut(s)	206, 766
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	206, 636
BssNI	GRCGYC	2 cut(s)	219, 264
BssT1I	CCWWGG	2 cut(s)	206, 636
Bst2UI	CCWGG	1 cut(s)	847
BstACI	GRCGYC	2 cut(s)	219, 264
BstC8I	GCNNGC	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	450, 632, 923
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	539
BstMAI	GTCTC	5 cut(s)	152, 206, 237, 269, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 352, 390, 590
BstNI	CCWGG	1 cut(s)	847
BstPAI	GACNNNNGTC	2 cut(s)	49, 218
BstSCI	CCNGG	1 cut(s)	845
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	628, 921, 924
BstV2I	GAAGAC	1 cut(s)	902
BsuRI	GGCC	2 cut(s)	438, 814
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	450, 632, 923
Cac8I	GCNNGC	1 cut(s)	436
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	812
CseI	GACGC	4 cut(s)	158, 272, 695, 858
CviAII	CATG	3 cut(s)	207, 298, 796
EciI	GGCGGA	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	37, 203
Eco130I	CCWWGG	2 cut(s)	206, 636
Eco24I	GRGCYC	2 cut(s)	39, 205
Eco31I	GGTCTC	2 cut(s)	206, 766
Eco53kI	GAGCTC	2 cut(s)	37, 203
Eco88I	CYCGRG	3 cut(s)	184, 236, 272
EcoICRI	GAGCTC	2 cut(s)	37, 203
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	206, 636
EcoT38I	GRGCYC	2 cut(s)	39, 205
ErhI	CCWWGG	2 cut(s)	206, 636
Esp3I	CGTCTC	3 cut(s)	152, 237, 269
FaeI	CATG	3 cut(s)	210, 301, 799
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FatI	CATG	3 cut(s)	206, 297, 795
FauI	CCCGC	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	7 cut(s)	84, 124, 127, 130, 642, 910, 913
FokI	GGATG	3 cut(s)	457, 619, 910
FriOI	GRGCYC	2 cut(s)	39, 205
Fsp4HI	GCNGC	7 cut(s)	84, 124, 127, 130, 642, 910, 913
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	7 cut(s)	84, 124, 127, 130, 642, 910, 913
HaeIII	GGCC	2 cut(s)	438, 814
HapII	CCGG	1 cut(s)	766
HgaI	GACGC	4 cut(s)	158, 272, 695, 858
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	2 cut(s)	219, 264
Hin1II	CATG	3 cut(s)	210, 301, 799
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	2 cut(s)	484, 873
HindII	GTYRAC	2 cut(s)	484, 873
HinfI	GANTC	7 cut(s)	45, 239, 427, 485, 551, 751, 898
HpaII	CCGG	1 cut(s)	766
HphI	GGTGA	2 cut(s)	424, 518
Hpy166II	GTNNAC	3 cut(s)	54, 484, 873
Hpy188I	TCNGA	8 cut(s)	95, 262, 588, 598, 711, 732, 865, 903
Hpy188III	TCNNGA	4 cut(s)	186, 236, 695, 748
Hpy8I	GTNNAC	3 cut(s)	54, 484, 873
Hpy99I	CGWCG	7 cut(s)	137, 140, 152, 221, 262, 376, 711
HpyAV	CCTTC	4 cut(s)	274, 394, 442, 892
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	4, 644, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 352, 390, 590
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	2 cut(s)	219, 264
Hsp92II	CATG	3 cut(s)	210, 301, 799
HspAI	GCGC	1 cut(s)	537
LmnI	GCTCC	4 cut(s)	42, 174, 208, 589
LpnPI	CCDG	8 cut(s)	127, 374, 420, 449, 627, 779, 832, 859
Lsp1109I	GCAGC	3 cut(s)	628, 921, 924
LweI	GCATC	2 cut(s)	255, 856
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	506
MboII	GAAGA	6 cut(s)	409, 427, 683, 689, 692, 907
MfeI	CAATTG	1 cut(s)	777
MhlI	GDGCHC	2 cut(s)	39, 205
MluCI	AATT	7 cut(s)	71, 223, 307, 476, 490, 725, 777
MluI	ACGCGT	1 cut(s)	150
MlyI	GAGTC	6 cut(s)	39, 248, 479, 545, 745, 892
MmeI	TCCRAC	3 cut(s)	132, 240, 689
MroXI	GAANNNNTTC	2 cut(s)	284, 835
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	766
MspR9I	CCNGG	1 cut(s)	847
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	129, 352, 390, 590
NcoI	CCATGG	1 cut(s)	206
NlaIII	CATG	3 cut(s)	210, 301, 799
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 270
PdmI	GAANNNNTTC	2 cut(s)	284, 835
PfeI	GAWTC	1 cut(s)	427
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	7 cut(s)	85, 125, 128, 131, 643, 911, 914
PleI	GAGTC	6 cut(s)	39, 247, 479, 545, 745, 892
PpsI	GAGTC	6 cut(s)	39, 247, 479, 545, 745, 892
PshAI	GACNNNNGTC	2 cut(s)	49, 218
Psp124BI	GAGCTC	2 cut(s)	39, 205
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	646
SacI	GAGCTC	2 cut(s)	39, 205
SalI	GTCGAC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	7 cut(s)	84, 124, 127, 130, 642, 910, 913
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	6 cut(s)	39, 248, 479, 545, 745, 892
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	2 cut(s)	39, 205
SetI	ASST	9 cut(s)	39, 183, 205, 222, 386, 395, 586, 616, 941
SfaNI	GCATC	2 cut(s)	255, 856
SfcI	CTRYAG	1 cut(s)	642
Sse9I	AATT	7 cut(s)	71, 223, 307, 476, 490, 725, 777
SsiI	CCGC	6 cut(s)	84, 123, 126, 129, 322, 501
SspMI	CTAG	1 cut(s)	738
SstI	GAGCTC	2 cut(s)	39, 205
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	2 cut(s)	206, 636
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	6 cut(s)	242, 483, 488, 494, 516, 528
TaqII	GACCGA	2 cut(s)	47, 230
TasI	AATT	7 cut(s)	71, 223, 307, 476, 490, 725, 777
TauI	GCSGC	4 cut(s)	86, 126, 129, 132
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	641, 909, 912
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	64, 314, 461, 912
TspGWI	ACGGA	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	782
XapI	RAATTY	2 cut(s)	490, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	2 cut(s)	284, 835
XspI	CTAG	1 cut(s)	738
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.