Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

62314561 .. 62316720

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAGACCCTTGTGAAATTAGCAACGAAGCCTACTCTGCGTAACACTCTGAGCAAAACCCAATTCATCGCCACCGTCAATTTCAAATCTTTGTCCACCAAACCCTCCGCGCCGCCCAATCGGAACCCTAAGAAAGCCGACGACGAGTGGAACGACGCGTGGGAGACCGCGTGGCTCCCGCCGGACCCATCCTCCGAGAACGCCAGAGCTCCATGGGAGACCGACGAGAATCTCCCGCCGCCGTCTGCGGCGGCCGTGATTCCCTCCGACGCCGACCCCGAGACGAAGGCGTTTGTGGAGGACATGAATGCAAATTGGGACGAGAGACGGAAACCAAAGGAGGAGAAGAAACAGCAGCAGAGTGAGAGTGGGAAGCTTTATAGCTTGGAGAATATAAAGAAGGACTATAGGTTGAAGAAGCAGAGGATTCATGCCGGGCTTTGGATGAAGGAGATTGAGAAGCAGCAAGAGGCTAAATTAGCTGATTCCGGTTCCATTGGTGGCGGTGACGATATCGAACGCTTGCTTGATAGCTGCTCCGATATCTTCGATTCTACCAACAATGATTTGGAAAATGCCAAAGTGCCGAGCGCTGATGATTTCAAGAACAAGCCGGATGGTTGGGAAACGACAGCCAAGGCTGAAGAGGGAAGTGTGTGGGAGATGACACAGAGGGAAGAAGATATCCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTATAATAAGTTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGTCGAAGAAGGCCAATCGATGGGTGGAAATACATGATAGAGGAGCTGGGGCCAAATGCTAGGAAGGGAAAAGGTGCTGTTTCAAGGTTACCAAATTTATCCGATGCATCAACCCAACCCTTCAAGGAGGAGAGGACTCCAATTAGCACCAGTCTTACCTCCTACAAGGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

35.52

Weight (kDa)

5.59

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccII	CGCG	3 cut(s)	110, 158, 170
AciI	CCGC	9 cut(s)	108, 113, 168, 179, 236, 239, 248, 251, 504
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	592
AfiI	CCNNNNNNNGG	2 cut(s)	441, 782
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	85, 415, 604, 846, 886
AluBI	AGCT	6 cut(s)	209, 376, 384, 482, 534, 808
AluI	AGCT	6 cut(s)	209, 376, 384, 482, 534, 808
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	4 cut(s)	158, 212, 275, 319
Ama87I	CYCGRG	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	3 cut(s)	252, 773, 812
ApeKI	GCWGC	3 cut(s)	355, 463, 534
ApoI	RAATTY	1 cut(s)	856
AspLEI	GCGC	2 cut(s)	112, 593
AspS9I	GGNCC	2 cut(s)	184, 812
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	367, 475, 521
BccI	CCATC	3 cut(s)	196, 611, 776
BceAI	ACGGC	2 cut(s)	226, 239
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	4 cut(s)	158, 212, 275, 319
BfaI	CTAG	2 cut(s)	738, 822
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	594
BisI	GCNGC	7 cut(s)	113, 239, 249, 252, 356, 464, 535
BlsI	GCNGC	7 cut(s)	114, 240, 250, 253, 357, 465, 536
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	184, 812
BmiI	GGNNCC	5 cut(s)	125, 176, 186, 493, 813
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	856, 878
BpuMI	CCSGG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	158, 212
BsaJI	CCNNGG	2 cut(s)	212, 636
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 176, 185, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 782
Bse1I	ACTGG	1 cut(s)	912
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	212, 636
BseGI	GGATG	3 cut(s)	188, 450, 622
BseLI	CCNNNNNNNGG	2 cut(s)	441, 782
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	912
BseRI	GAGGAG	3 cut(s)	356, 818, 905
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	367, 475, 521
BseYI	CCCAGC	1 cut(s)	808
Bsh1236I	CGCG	3 cut(s)	110, 158, 170
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	254, 775, 814
BshVI	ATCGAT	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	4 cut(s)	182, 435, 489, 614
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	441, 782
BsmAI	GTCTC	4 cut(s)	158, 212, 275, 319
BsmBI	CGTCTC	2 cut(s)	275, 319
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	254, 775, 814
Bso31I	GGTCTC	2 cut(s)	158, 212
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	9 cut(s)	108, 113, 168, 179, 236, 239, 248, 251, 504
BspANI	GGCC	3 cut(s)	254, 775, 814
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	780
BspFNI	CGCG	3 cut(s)	110, 158, 170
BspLI	GGNNCC	5 cut(s)	125, 176, 186, 493, 813
BspTNI	GGTCTC	2 cut(s)	158, 212
BsrI	ACTGG	1 cut(s)	912
BssECI	CCNNGG	2 cut(s)	212, 636
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	212, 636
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	50, 129
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	188, 450, 622
BstFNI	CGCG	3 cut(s)	110, 158, 170
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	112, 593
BstMAI	GTCTC	4 cut(s)	158, 212, 275, 319
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 479
BstPI	GGTNACC	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	3 cut(s)	110, 158, 170
BstV1I	GCAGC	3 cut(s)	367, 475, 521
BstZI	CGGCCG	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	254, 775, 814
BsuTUI	ATCGAT	1 cut(s)	780
BtgI	CCRYGG	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	188, 450, 622
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	2 cut(s)	112, 593
Cfr13I	GGNCC	2 cut(s)	184, 812
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	3 cut(s)	164, 278, 695
CviAII	CATG	4 cut(s)	213, 304, 431, 796
DdeI	CTNAG	2 cut(s)	50, 129
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	212, 636
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	2 cut(s)	158, 212
Eco32I	GATATC	3 cut(s)	514, 544, 685
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	592
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	849
EcoRV	GATATC	3 cut(s)	514, 544, 685
EcoT14I	CCWWGG	2 cut(s)	212, 636
EcoT22I	ATGCAT	1 cut(s)	871
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	212, 636
Esp3I	CGTCTC	2 cut(s)	275, 319
FaeI	CATG	4 cut(s)	216, 307, 434, 799
FaiI	YATR	9 cut(s)	214, 305, 381, 395, 408, 432, 720, 758, 797
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	212, 303, 430, 795
FauI	CCCGC	2 cut(s)	186, 243
Fnu4HI	GCNGC	7 cut(s)	113, 239, 249, 252, 356, 464, 535
FokI	GGATG	3 cut(s)	175, 457, 629
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	7 cut(s)	113, 239, 249, 252, 356, 464, 535
FspBI	CTAG	2 cut(s)	738, 822
GlaI	GCGC	2 cut(s)	111, 592
GluI	GCNGC	7 cut(s)	113, 239, 249, 252, 356, 464, 535
GsaI	CCCAGC	1 cut(s)	812
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	254, 775, 814
HapII	CCGG	4 cut(s)	182, 435, 489, 614
HgaI	GACGC	3 cut(s)	164, 278, 695
HhaI	GCGC	2 cut(s)	112, 593
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	216, 307, 434, 799
Hin6I	GCGC	2 cut(s)	110, 591
HinP1I	GCGC	2 cut(s)	110, 591
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	7 cut(s)	229, 259, 427, 485, 551, 751, 898
HpaII	CCGG	4 cut(s)	182, 435, 489, 614
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	7 cut(s)	51, 123, 196, 268, 541, 732, 865
Hpy188III	TCNNGA	2 cut(s)	604, 748
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	6 cut(s)	143, 146, 158, 227, 272, 711
HpyAV	CCTTC	7 cut(s)	280, 394, 442, 698, 765, 820, 892
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	4, 311, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 479
HpyF3I	CTNAG	2 cut(s)	50, 129
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	216, 307, 434, 799
HspAI	GCGC	2 cut(s)	110, 591
LmnI	GCTCC	4 cut(s)	180, 214, 542, 805
LpnPI	CCDG	7 cut(s)	195, 217, 448, 502, 627, 794, 925
Lsp1109I	GCAGC	3 cut(s)	367, 475, 521
LweI	GCATC	2 cut(s)	856, 878
MaeI	CTAG	2 cut(s)	738, 822
MaeIII	GTNAC	3 cut(s)	41, 506, 849
MboII	GAAGA	7 cut(s)	358, 427, 538, 656, 689, 692, 780
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	17, 62, 79, 313, 476, 711, 856, 903
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	745, 892
MmeI	TCCRAC	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	871
MspI	CCGG	4 cut(s)	182, 435, 489, 614
MspR9I	CCNGG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	313
MvnI	CGCG	3 cut(s)	110, 158, 170
MwoI	GCNNNNNNNGC	2 cut(s)	37, 479
NciI	CCSGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	212
NlaIII	CATG	4 cut(s)	216, 307, 434, 799
NlaIV	GGNNCC	5 cut(s)	125, 176, 186, 493, 813
NmeAIII	GCCGAG	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 276
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	5 cut(s)	229, 259, 427, 485, 551
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	7 cut(s)	114, 240, 250, 253, 357, 465, 536
PleI	GAGTC	2 cut(s)	745, 892
PpsI	GAGTC	2 cut(s)	745, 892
Psp124BI	GAGCTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	808
PspN4I	GGNNCC	5 cut(s)	125, 176, 186, 493, 813
PspPI	GGNCC	2 cut(s)	184, 812
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	7 cut(s)	113, 239, 249, 252, 356, 464, 535
Sau96I	GGNCC	2 cut(s)	184, 812
SchI	GAGTC	2 cut(s)	745, 892
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	856, 878
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	17, 62, 79, 313, 476, 711, 856, 903
SsiI	CCGC	9 cut(s)	108, 113, 168, 179, 236, 239, 248, 251, 504
SspMI	CTAG	2 cut(s)	738, 822
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	2 cut(s)	212, 636
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	516, 549, 709, 766, 780
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	8 cut(s)	17, 62, 79, 313, 476, 711, 856, 903
TauI	GCSGC	4 cut(s)	115, 241, 251, 254
TfiI	GAWTC	5 cut(s)	229, 259, 427, 485, 551
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	355, 463, 534
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	55, 320, 419, 461
TspGWI	ACGGA	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	565, 783
XspI	CTAG	2 cut(s)	738, 822
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.