Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

5199078 .. 5201811

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1073900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAAGCCCTTAAACGCATAGCAAGAAAGACCGAGCTCCACCGACTTTCGTCCACAATCGCTAAAACCCAATTCATTTCAGCCGCCAATGTCCGAACCTTCTCCTCCAACTCAAAGAAAGCGGGCGGCGACGACGACTGGAACGACGCATGGGAGACGGCGTGGCTCCCACCCGACCTCTCGGGAAATAACAGCAGAGCTCCATGGGAGACCGACGTCAATTTCTCGTCTCCCGGGTCGAGCATCGTGCTTCCGTCGGACGCCGACCACGACACGAAGGCGTTCGTGGAGGACATGAACGAGAATTGGAACGAGAGGCGGAAACCCAAAGAGGAAAGGAAGCAGAATCAGCAGAGCGAGAGTGGGTCGTCGCTTTATAGCCTGGAGAGCTTGAAGAAGGACTATCGGGTGAAGAAACAGAGGATTCACGCTGGGCTTTGGATGAAGGAGATTGAAAAGCAGGAGGAGGCTAAATTGGCCGACTCGAATTCGATTGGCGGTGGCGACGACATCGAGCGATTGCTCGATAGTTGCTCTGACATTTTTGACTCCCCTAACAACGATTTGGGGAACTCTAATGCACCGAGTGCTTCTGACTACAAAAACAAACCTGATGGTTGGGAAACTACATCTAAGGCTCAGGAGGGAAATATATGGGAGATGACGCAGAGAGAAGAAGACATTCTTCTTCAAGAGTTTGAGCGTCGGATTGCATACAATAAATTTCAGATTGCTAGCTTTATCAAGACTCACATATTTAGCCGGAGGAGACCAATTGATGGGTGGAAATACATGATAGAGGAGTTAGGGCCGAATGCGAGGAAAGGGAAGGGTTCTGTTTCAAGGCTACCAAGTCTATCCGATGCATCAACCCAACCCTTCAAGGAGGAGAAGACTCCGATGAGCAGCGGCAGTCTTTCCCCATATAAGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

35.42

Weight (kDa)

5.97

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	779
AciI	CCGC	6 cut(s)	84, 122, 126, 319, 498, 909
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	487, 722
AcyI	GRCGYC	2 cut(s)	216, 261
AdeI	CACNNNGTG	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	779, 928
AgsI	TTSAA	5 cut(s)	394, 455, 692, 843, 883
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	4 cut(s)	37, 200, 390, 738
AluI	AGCT	4 cut(s)	37, 200, 390, 738
Alw21I	GWGCWC	2 cut(s)	39, 202
Alw26I	GTCTC	4 cut(s)	149, 203, 234, 763
Ama87I	CYCGRG	2 cut(s)	181, 233
AoxI	GGCC	2 cut(s)	477, 809
ApeKI	GCWGC	1 cut(s)	906
ApoI	RAATTY	2 cut(s)	487, 722
Asp700I	GAANNNNTTC	2 cut(s)	281, 681
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	2 cut(s)	234, 235
AsuHPI	GGTGA	1 cut(s)	421
AsuNHI	GCTAGC	1 cut(s)	734
AvaI	CYCGRG	2 cut(s)	181, 233
BanII	GRGCYC	2 cut(s)	39, 202
BbsI	GAAGAC	2 cut(s)	684, 899
Bbv12I	GWGCWC	2 cut(s)	39, 202
BbvI	GCAGC	1 cut(s)	918
BccI	CCATC	2 cut(s)	608, 773
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	2 cut(s)	234, 235
BcoDI	GTCTC	4 cut(s)	149, 203, 234, 763
BfaI	CTAG	1 cut(s)	735
BisI	GCNGC	4 cut(s)	84, 127, 907, 910
BlsI	GCNGC	4 cut(s)	85, 128, 908, 911
Bme1390I	CCNGG	3 cut(s)	234, 235, 383
BmeT110I	CYCGRG	2 cut(s)	181, 233
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	3 cut(s)	234, 235, 383
BmsI	GCATC	3 cut(s)	252, 853, 875
BmtI	GCTAGC	1 cut(s)	738
BoxI	GACNNNNGTC	2 cut(s)	49, 215
BpiI	GAAGAC	2 cut(s)	684, 899
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	639
BpuMI	CCSGG	2 cut(s)	234, 235
BsaHI	GRCGYC	2 cut(s)	216, 261
BsaI	GGTCTC	2 cut(s)	203, 763
BsaJI	CCNNGG	2 cut(s)	203, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	779, 928
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	203, 233
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	779, 928
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	5 cut(s)	94, 479, 781, 815, 902
BseXI	GCAGC	1 cut(s)	918
BseYI	CCCAGC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	479, 811
BsiHKAI	GWGCWC	2 cut(s)	39, 202
BsiHKCI	CYCGRG	2 cut(s)	181, 233
BsiSI	CCGG	2 cut(s)	234, 763
BslI	CCNNNNNNNGG	2 cut(s)	779, 928
BsmAI	GTCTC	4 cut(s)	149, 203, 234, 763
BsmBI	CGTCTC	2 cut(s)	149, 234
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	479, 811
Bso31I	GGTCTC	2 cut(s)	203, 763
BsoBI	CYCGRG	2 cut(s)	181, 233
Bsp1286I	GDGCHC	2 cut(s)	39, 202
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	6 cut(s)	84, 122, 126, 319, 498, 909
BspANI	GGCC	2 cut(s)	479, 811
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	167
BspOI	GCTAGC	1 cut(s)	738
BspTNI	GGTCTC	2 cut(s)	203, 763
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	203, 233
BssNI	GRCGYC	2 cut(s)	216, 261
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	383
BstACI	GRCGYC	2 cut(s)	216, 261
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	6, 124, 736
BstDEI	CTNAG	2 cut(s)	633, 639
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	447
BstMAI	GTCTC	4 cut(s)	149, 203, 234, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 387, 476, 587
BstNI	CCWGG	1 cut(s)	383
BstPAI	GACNNNNGTC	2 cut(s)	49, 215
BstSCI	CCNGG	3 cut(s)	232, 233, 381
BstV1I	GCAGC	1 cut(s)	918
BstV2I	GAAGAC	2 cut(s)	684, 899
BsuRI	GGCC	2 cut(s)	479, 811
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	6, 124, 736
Cfr13I	GGNCC	1 cut(s)	809
Cfr9I	CCCGGG	1 cut(s)	233
CseI	GACGC	4 cut(s)	155, 269, 673, 692
CviAII	CATG	4 cut(s)	150, 204, 295, 793
DdeI	CTNAG	2 cut(s)	633, 639
DraIII	CACNNNGTG	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	2 cut(s)	37, 200
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	2 cut(s)	39, 202
Eco31I	GGTCTC	2 cut(s)	203, 763
Eco53kI	GAGCTC	2 cut(s)	37, 200
Eco88I	CYCGRG	2 cut(s)	181, 233
EcoICRI	GAGCTC	2 cut(s)	37, 200
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	868
EcoT38I	GRGCYC	2 cut(s)	39, 202
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	2 cut(s)	149, 234
FaeI	CATG	4 cut(s)	153, 207, 298, 796
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FatI	CATG	4 cut(s)	149, 203, 294, 792
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	84, 127, 907, 910
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	2 cut(s)	39, 202
Fsp4HI	GCNGC	4 cut(s)	84, 127, 907, 910
FspBI	CTAG	1 cut(s)	735
GluI	GCNGC	4 cut(s)	84, 127, 907, 910
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	479, 811
HapII	CCGG	2 cut(s)	234, 763
HgaI	GACGC	4 cut(s)	155, 269, 673, 692
Hin1I	GRCGYC	2 cut(s)	216, 261
Hin1II	CATG	4 cut(s)	153, 207, 298, 796
HinfI	GANTC	6 cut(s)	346, 424, 482, 548, 748, 895
HpaII	CCGG	2 cut(s)	234, 763
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	8 cut(s)	95, 259, 538, 595, 708, 729, 862, 900
Hpy188III	TCNNGA	4 cut(s)	183, 641, 692, 745
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	8 cut(s)	134, 137, 149, 218, 259, 373, 509, 708
HpyAV	CCTTC	6 cut(s)	109, 271, 391, 439, 823, 889
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	4, 581, 713, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 387, 476, 587
HpyF3I	CTNAG	2 cut(s)	633, 639
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	2 cut(s)	216, 261
Hsp92II	CATG	4 cut(s)	153, 207, 298, 796
LmnI	GCTCC	3 cut(s)	42, 171, 205
LpnPI	CCDG	9 cut(s)	124, 247, 368, 395, 417, 446, 624, 626, 776
Lsp1109I	GCAGC	1 cut(s)	918
LweI	GCATC	3 cut(s)	252, 853, 875
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	216
MboII	GAAGA	7 cut(s)	406, 424, 677, 680, 686, 689, 904
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	2 cut(s)	39, 202
MluCI	AATT	7 cut(s)	71, 220, 304, 473, 487, 722, 774
MlyI	GAGTC	4 cut(s)	476, 542, 742, 889
MmeI	TCCRAC	3 cut(s)	132, 237, 686
Mph1103I	ATGCAT	1 cut(s)	868
MroXI	GAANNNNTTC	2 cut(s)	281, 681
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	909
MspI	CCGG	2 cut(s)	234, 763
MspR9I	CCNGG	3 cut(s)	234, 235, 383
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	4 cut(s)	349, 387, 476, 587
NciI	CCSGG	2 cut(s)	234, 235
NcoI	CCATGG	1 cut(s)	203
NheI	GCTAGC	1 cut(s)	734
NlaIII	CATG	4 cut(s)	153, 207, 298, 796
NlaIV	GGNNCC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 267
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	2 cut(s)	281, 681
PfeI	GAWTC	2 cut(s)	346, 424
PflMI	CCANNNNNTGG	1 cut(s)	779
PkrI	GCNGC	4 cut(s)	85, 128, 908, 911
PleI	GAGTC	4 cut(s)	476, 542, 742, 889
PpsI	GAGTC	4 cut(s)	476, 542, 742, 889
PshAI	GACNNNNGTC	2 cut(s)	49, 215
Psp124BI	GAGCTC	2 cut(s)	39, 202
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	809
SacI	GAGCTC	2 cut(s)	39, 202
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	4 cut(s)	84, 127, 907, 910
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	4 cut(s)	476, 542, 742, 889
ScrFI	CCNGG	3 cut(s)	234, 235, 383
SduI	GDGCHC	2 cut(s)	39, 202
SetI	ASST	9 cut(s)	39, 101, 180, 202, 219, 392, 613, 740, 938
SfaNI	GCATC	3 cut(s)	252, 853, 875
SmaI	CCCGGG	1 cut(s)	235
Sse9I	AATT	7 cut(s)	71, 220, 304, 473, 487, 722, 774
SsiI	CCGC	6 cut(s)	84, 122, 126, 319, 498, 909
SspMI	CTAG	1 cut(s)	735
SstI	GAGCTC	2 cut(s)	39, 202
StyD4I	CCNGG	3 cut(s)	232, 233, 381
StyI	CCWWGG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	239, 485, 491, 513, 525
TaqII	GACCGA	2 cut(s)	47, 227
TasI	AATT	7 cut(s)	71, 220, 304, 473, 487, 722, 774
TauI	GCSGC	3 cut(s)	86, 129, 912
TfiI	GAWTC	2 cut(s)	346, 424
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseI	GCWGC	1 cut(s)	906
TspDTI	ATGAA	3 cut(s)	64, 311, 458
TspGWI	ACGGA	1 cut(s)	243
TspMI	CCCGGG	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	779
XapI	RAATTY	2 cut(s)	487, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	780
XmaI	CCCGGG	1 cut(s)	233
XmnI	GAANNNNTTC	2 cut(s)	281, 681
XspI	CTAG	1 cut(s)	735
ZraI	GACGTC	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.