Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

61077161 .. 61078982

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAAACCCTTGTGAAATTAGCAACGAAGCCTACTCTGCGTAACACTCTGAGCAAAACCCAATTCATCTCCACCGTCAATTTCAAATCTTTCTCCACCAAACCCTCCGCGCCGCCCAATCGGAACCCTAAGAAAGCCGACGACGAGTGGAACGACGCGTGGGAGACCGCGTGGCTCCCGCCGGACCGGTCCTCCGAGAACGCCAGAGCTCCATGGGAGGCCGACGAGAATCTCTCGCCGCCGTCTGCGGCGGCGGAGGAAGTCGTGATTCCCTCCGACGCCGACCCCGAGACGAAGGCGTTTGTGGAGGACATGAATGCGAATTGGGACGAGAGACGGAAACCCAAGGAGGAGAAGAAACAGCAGCAGAGTGAGAGTGGGAAGCTTTATAGCTTGGAGAATATAAAGAAGGACTATAGGTTGAAGAAGCAGAGGATTCATGCCGGGCTTTGGATGAAGGAGATTGAGAAGCAGCAAGAGGCTAAATTAGCTGATTCCGGTTCCATTGGTGGGGGTGACGATATCGAACGCTTGCTTGATAGCTGTTCCGATATTTTCGATTCTACAAACAATGATTTGGAAAATGCGAAAGTGCCAAGCGCTGATGATTTCAAGAACAAGCCGGATGGTTGGGAAACGACAGCCAAGGCTGAAGAGGGAAGTGTGTGGGAGATGACACAGAGGGAGGAAGATATCCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTATAATAAGTTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGTCGAAGGAGACCAATCGATGGGTGGAAATACATGATAGAGGAGCTGGGGCCAAATGCTAGGAAGGGAAAAGGTGCTGTTTCAAGGTTACCAAATTTATCCGATGCATCAACACAACCCTTCAAGGAGGAGAGGACTCCAATTAGCACCAGTCTTACCTCCTACAAGGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.94

Weight (kDa)

5.48

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccII	CGCG	3 cut(s)	110, 158, 170
AciI	CCGC	8 cut(s)	108, 113, 168, 179, 239, 248, 251, 254
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	601
AfiI	CCNNNNNNNGG	3 cut(s)	450, 510, 791
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	5 cut(s)	85, 424, 613, 855, 895
AluBI	AGCT	6 cut(s)	209, 385, 393, 491, 543, 817
AluI	AGCT	6 cut(s)	209, 385, 393, 491, 543, 817
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	4 cut(s)	158, 284, 328, 775
Ama87I	CYCGRG	1 cut(s)	287
Aor51HI	AGCGCT	1 cut(s)	601
AoxI	GGCC	2 cut(s)	219, 821
ApeKI	GCWGC	2 cut(s)	364, 472
ApoI	RAATTY	1 cut(s)	865
AsiGI	ACCGGT	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	112, 602
AspS9I	GGNCC	3 cut(s)	184, 189, 821
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	184, 189
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	376, 484
BccI	CCATC	2 cut(s)	620, 785
BceAI	ACGGC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	4 cut(s)	158, 284, 328, 775
BfaI	CTAG	2 cut(s)	747, 831
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	603
BisI	GCNGC	6 cut(s)	113, 239, 249, 252, 365, 473
BlsI	GCNGC	6 cut(s)	114, 240, 250, 253, 366, 474
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	2 cut(s)	184, 189
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	184, 189, 821
BmiI	GGNNCC	4 cut(s)	125, 176, 502, 822
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	865, 887
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	2 cut(s)	158, 775
BsaJI	CCNNGG	3 cut(s)	212, 345, 645
BsaWI	WCCGGW	2 cut(s)	186, 497
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 176, 185, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	450, 510, 791
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	921
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	3 cut(s)	212, 345, 645
BseGI	GGATG	2 cut(s)	459, 631
BseLI	CCNNNNNNNGG	3 cut(s)	450, 510, 791
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	921
BseRI	GAGGAG	3 cut(s)	365, 827, 914
BseXI	GCAGC	2 cut(s)	376, 484
BseYI	CCCAGC	1 cut(s)	817
Bsh1236I	CGCG	3 cut(s)	110, 158, 170
BshFI	GGCC	2 cut(s)	221, 823
BshTI	ACCGGT	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	182, 187, 444, 498, 623
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	450, 510, 791
BsmAI	GTCTC	4 cut(s)	158, 284, 328, 775
BsmBI	CGTCTC	2 cut(s)	284, 328
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	221, 823
Bso31I	GGTCTC	2 cut(s)	158, 775
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	8 cut(s)	108, 113, 168, 179, 239, 248, 251, 254
BspANI	GGCC	2 cut(s)	221, 823
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	789
BspFNI	CGCG	3 cut(s)	110, 158, 170
BspLI	GGNNCC	4 cut(s)	125, 176, 502, 822
BspTNI	GGTCTC	2 cut(s)	158, 775
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	921
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	212, 345, 645
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	3 cut(s)	212, 345, 645
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	50, 129
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	858
BstF5I	GGATG	2 cut(s)	459, 631
BstFNI	CGCG	3 cut(s)	110, 158, 170
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	2 cut(s)	112, 602
BstMAI	GTCTC	4 cut(s)	158, 284, 328, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 488
BstPI	GGTNACC	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	3 cut(s)	110, 158, 170
BstV1I	GCAGC	2 cut(s)	376, 484
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	2 cut(s)	221, 823
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	459, 631
Cac8I	GCNNGC	1 cut(s)	533
CfoI	GCGC	2 cut(s)	112, 602
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	184, 189, 821
ClaI	ATCGAT	1 cut(s)	789
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	3 cut(s)	164, 287, 704
CspAI	ACCGGT	1 cut(s)	186
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	4 cut(s)	213, 313, 440, 805
DdeI	CTNAG	2 cut(s)	50, 129
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	212, 345, 645
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	2 cut(s)	158, 775
Eco32I	GATATC	2 cut(s)	523, 694
Eco47I	GGWCC	2 cut(s)	184, 189
Eco47III	AGCGCT	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	287
Eco91I	GGTNACC	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	858
EcoRV	GATATC	2 cut(s)	523, 694
EcoT14I	CCWWGG	3 cut(s)	212, 345, 645
EcoT22I	ATGCAT	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	212, 345, 645
Esp3I	CGTCTC	2 cut(s)	284, 328
FaeI	CATG	4 cut(s)	216, 316, 443, 808
FaiI	YATR	9 cut(s)	214, 314, 390, 404, 417, 441, 729, 767, 806
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	212, 312, 439, 804
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	113, 239, 249, 252, 365, 473
FokI	GGATG	2 cut(s)	466, 638
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	6 cut(s)	113, 239, 249, 252, 365, 473
FspBI	CTAG	2 cut(s)	747, 831
GlaI	GCGC	2 cut(s)	111, 601
GluI	GCNGC	6 cut(s)	113, 239, 249, 252, 365, 473
GsaI	CCCAGC	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	2 cut(s)	221, 823
HapII	CCGG	5 cut(s)	182, 187, 444, 498, 623
HgaI	GACGC	3 cut(s)	164, 287, 704
HhaI	GCGC	2 cut(s)	112, 602
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	216, 316, 443, 808
Hin6I	GCGC	2 cut(s)	110, 600
HinP1I	GCGC	2 cut(s)	110, 600
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	7 cut(s)	229, 268, 436, 494, 560, 760, 907
HpaII	CCGG	5 cut(s)	182, 187, 444, 498, 623
HphI	GGTGA	1 cut(s)	527
Hpy188I	TCNGA	7 cut(s)	51, 123, 196, 277, 550, 741, 874
Hpy188III	TCNNGA	3 cut(s)	265, 613, 757
Hpy99I	CGWCG	6 cut(s)	143, 146, 158, 227, 281, 720
HpyAV	CCTTC	7 cut(s)	289, 403, 451, 707, 771, 829, 901
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	4, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 488
HpyF3I	CTNAG	2 cut(s)	50, 129
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	216, 316, 443, 808
HspAI	GCGC	2 cut(s)	110, 600
LmnI	GCTCC	3 cut(s)	180, 214, 814
LpnPI	CCDG	8 cut(s)	195, 200, 217, 457, 511, 636, 803, 934
Lsp1109I	GCAGC	2 cut(s)	376, 484
LweI	GCATC	2 cut(s)	865, 887
MaeI	CTAG	2 cut(s)	747, 831
MaeIII	GTNAC	3 cut(s)	41, 515, 858
MboII	GAAGA	4 cut(s)	367, 436, 665, 701
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	17, 62, 79, 322, 485, 720, 865, 912
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	754, 901
MmeI	TCCRAC	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	880
MspI	CCGG	5 cut(s)	182, 187, 444, 498, 623
MspR9I	CCNGG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	322
MvnI	CGCG	3 cut(s)	110, 158, 170
MwoI	GCNNNNNNNGC	2 cut(s)	37, 488
NciI	CCSGG	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	212
NlaIII	CATG	4 cut(s)	216, 316, 443, 808
NlaIV	GGNNCC	4 cut(s)	125, 176, 502, 822
NmuCI	GTSAC	1 cut(s)	515
NsiI	ATGCAT	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 285
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	5 cut(s)	229, 268, 436, 494, 560
PflMI	CCANNNNNTGG	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	114, 240, 250, 253, 366, 474
PleI	GAGTC	2 cut(s)	754, 901
PpsI	GAGTC	2 cut(s)	754, 901
Psp124BI	GAGCTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	817
PspN4I	GGNNCC	4 cut(s)	125, 176, 502, 822
PspPI	GGNCC	3 cut(s)	184, 189, 821
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	6 cut(s)	113, 239, 249, 252, 365, 473
Sau96I	GGNCC	3 cut(s)	184, 189, 821
SchI	GAGTC	2 cut(s)	754, 901
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	865, 887
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	2 cut(s)	184, 189
Sse9I	AATT	8 cut(s)	17, 62, 79, 322, 485, 720, 865, 912
SsiI	CCGC	8 cut(s)	108, 113, 168, 179, 239, 248, 251, 254
SspMI	CTAG	2 cut(s)	747, 831
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	3 cut(s)	212, 345, 645
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	525, 558, 718, 775, 789
TasI	AATT	8 cut(s)	17, 62, 79, 322, 485, 720, 865, 912
TauI	GCSGC	4 cut(s)	115, 241, 251, 254
TfiI	GAWTC	5 cut(s)	229, 268, 436, 494, 560
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	2 cut(s)	364, 472
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	4 cut(s)	55, 329, 428, 470
TspGWI	ACGGA	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	184, 189
XapI	RAATTY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XspI	CTAG	2 cut(s)	747, 831
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.