Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

30633388 .. 30635313

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAGAGCCTTGTGAAATTAGCAACCAAGACTACTCTGCTAGAGACTCTCATCAAAACCCAATTCACCTCCACCGTCAATTTCAAACCTTTCTCCACCAAACCCTCCGCGCCCAATCGGAACCCTAAGAACGCCGACGACGAGTGGAACGACGCGTGGGAGACGGCGTGGCTCCCGCCGGACCCGCCCTCCGAGAACAGCAGAGCTCCATGGGAGACCGACGAAAGTCTCTCACCGGCTGCGGCGGCGGAGGCGGTGGTGATTCCCTCCGACGCCGACCCCGAGACGAAGGCGTTTGTGGAGGACATGAATGCGAATTGGGACGAGAGACGGAAACCTAAGGAGGAGAAGAAGCAAGAGCAGAGTGGGAGTGGTGAGCTTTATAGCTTGGAGAATATAAAGAAGGACTATAGGTTGAAGAAGCAGAGGATTCATGCCGGGCTTTGGATGAAGGAGATTGAGAAGCAACAGGAGGCTAAGTTAGCTGATTCCGGCATTGGTGGCGGCGACGATATTGAGCGGTTGCTTGATAGCTGCTCCAATATTTTCGACACTACCAACAATGATTTGCAAAATGCGAAAGTGCCGAGTGCTGATGACTTCAAGAACAAGCCGGATGGTTGGGAGACGACATCCAAGGCTCAAGAGGGAAGTGTATGGGAGATGACACAGAGGGAAGAAGATATTCTGCTCCAAGAGTTTGAGCGTCGAATTGCTTATAATAAGTTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGTCGAAGGAGACCAATCGATGGGTGGAAATACATGATAGAGGAGCTGGGGCCAAATGCTAGGAAAGGAAAAGGTGCTGTTTCAAGGTTACCAAATCTATCTGATGCATCAACCCAACCCTTCAAGGAAGAGAGGACTCCAATTAGCACCAGTCTTACCTCCTACAAGAATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

35.49

Weight (kDa)

5.35

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccBSI	CCGCTC	1 cut(s)	520
AccII	CGCG	2 cut(s)	110, 155
AciI	CCGC	9 cut(s)	108, 176, 185, 242, 245, 248, 254, 504, 520
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	444, 782
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	85, 418, 604, 846, 886
AluBI	AGCT	6 cut(s)	206, 379, 387, 485, 534, 808
AluI	AGCT	6 cut(s)	206, 379, 387, 485, 534, 808
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	8 cut(s)	38, 155, 209, 233, 278, 322, 620, 766
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	812
ApeKI	GCWGC	2 cut(s)	239, 534
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	181, 812
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	58, 225, 271, 386
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	226, 521
BccI	CCATC	2 cut(s)	611, 776
BceAI	ACGGC	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	8 cut(s)	38, 155, 209, 233, 278, 322, 620, 766
BfaI	CTAG	3 cut(s)	41, 738, 822
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	5 cut(s)	240, 243, 246, 505, 535
BlsI	GCNGC	5 cut(s)	241, 244, 247, 506, 536
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	181, 812
BmiI	GGNNCC	4 cut(s)	122, 173, 183, 813
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	856, 878
BoxI	GACNNNNGTC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	209, 766
BsaJI	CCNNGG	2 cut(s)	209, 636
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 173, 182, 203, 464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 782
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	912
Bse21I	CCTNAGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	209, 636
BseGI	GGATG	3 cut(s)	453, 622, 632
BseLI	CCNNNNNNNGG	2 cut(s)	444, 782
BseNI	ACTGG	1 cut(s)	912
BseRI	GAGGAG	2 cut(s)	359, 818
BseXI	GCAGC	2 cut(s)	226, 521
BseYI	CCCAGC	1 cut(s)	808
Bsh1236I	CGCG	2 cut(s)	110, 155
BshFI	GGCC	1 cut(s)	814
BshVI	ATCGAT	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	5 cut(s)	179, 236, 438, 492, 614
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	444, 782
BsmAI	GTCTC	8 cut(s)	38, 155, 209, 233, 278, 322, 620, 766
BsmBI	CGTCTC	4 cut(s)	155, 278, 322, 620
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	814
Bso31I	GGTCTC	2 cut(s)	209, 766
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	9 cut(s)	108, 176, 185, 242, 245, 248, 254, 504, 520
BspANI	GGCC	1 cut(s)	814
BspDI	ATCGAT	1 cut(s)	780
BspFNI	CGCG	2 cut(s)	110, 155
BspLI	GGNNCC	4 cut(s)	122, 173, 183, 813
BspTNI	GGTCTC	2 cut(s)	209, 766
BsrBI	CCGCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	912
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	209, 636
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	209, 636
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	126, 339, 477
BstDSI	CCRYGG	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	453, 622, 632
BstFNI	CGCG	2 cut(s)	110, 155
BstHHI	GCGC	1 cut(s)	112
BstMAI	GTCTC	8 cut(s)	38, 155, 209, 233, 278, 322, 620, 766
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 245, 251, 482, 501
BstPAI	GACNNNNGTC	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	110, 155
BstV1I	GCAGC	2 cut(s)	226, 521
Bsu15I	ATCGAT	1 cut(s)	780
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	814
BsuTUI	ATCGAT	1 cut(s)	780
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	453, 622, 632
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	181, 812
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	3 cut(s)	161, 281, 695
CviAII	CATG	4 cut(s)	210, 307, 434, 796
DdeI	CTNAG	3 cut(s)	126, 339, 477
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	209, 636
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	2 cut(s)	209, 766
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	849
EcoT14I	CCWWGG	2 cut(s)	209, 636
EcoT22I	ATGCAT	1 cut(s)	871
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	209, 636
Esp3I	CGTCTC	4 cut(s)	155, 278, 322, 620
FaeI	CATG	4 cut(s)	213, 310, 437, 799
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	209, 306, 433, 795
FauI	CCCGC	2 cut(s)	183, 192
Fnu4HI	GCNGC	5 cut(s)	240, 243, 246, 505, 535
FokI	GGATG	3 cut(s)	460, 619, 629
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	5 cut(s)	240, 243, 246, 505, 535
FspBI	CTAG	3 cut(s)	41, 738, 822
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	5 cut(s)	240, 243, 246, 505, 535
GsaI	CCCAGC	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	814
HapII	CCGG	5 cut(s)	179, 236, 438, 492, 614
HgaI	GACGC	3 cut(s)	161, 281, 695
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	213, 310, 437, 799
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	6 cut(s)	46, 262, 430, 488, 751, 898
HpaII	CCGG	5 cut(s)	179, 236, 438, 492, 614
HphI	GGTGA	4 cut(s)	58, 225, 271, 386
Hpy188I	TCNGA	5 cut(s)	120, 193, 271, 732, 865
Hpy188III	TCNNGA	3 cut(s)	604, 644, 748
Hpy99I	CGWCG	7 cut(s)	140, 143, 155, 224, 275, 512, 711
HpyAV	CCTTC	5 cut(s)	283, 397, 445, 762, 892
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	4, 571, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 245, 251, 482, 501
HpyF3I	CTNAG	3 cut(s)	126, 339, 477
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	213, 310, 437, 799
HspAI	GCGC	1 cut(s)	110
LmnI	GCTCC	5 cut(s)	177, 211, 542, 696, 805
LpnPI	CCDG	8 cut(s)	192, 249, 451, 455, 505, 627, 794, 925
Lsp1109I	GCAGC	2 cut(s)	226, 521
LweI	GCATC	2 cut(s)	856, 878
MaeI	CTAG	3 cut(s)	41, 738, 822
MaeIII	GTNAC	1 cut(s)	849
MbiI	CCGCTC	1 cut(s)	520
MboII	GAAGA	5 cut(s)	361, 430, 689, 692, 902
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	6 cut(s)	17, 62, 79, 316, 711, 903
MluI	ACGCGT	1 cut(s)	153
MlyI	GAGTC	3 cut(s)	40, 745, 892
MmeI	TCCRAC	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	684
MspI	CCGG	5 cut(s)	179, 236, 438, 492, 614
MspR9I	CCNGG	1 cut(s)	439
Mva1269I	GAATGC	1 cut(s)	316
MvnI	CGCG	2 cut(s)	110, 155
MwoI	GCNNNNNNNGC	5 cut(s)	184, 245, 251, 482, 501
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	209
NlaIII	CATG	4 cut(s)	213, 310, 437, 799
NlaIV	GGNNCC	4 cut(s)	122, 173, 183, 813
NmeAIII	GCCGAG	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 147, 279
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	262, 430, 488
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	241, 244, 247, 506, 536
PleI	GAGTC	3 cut(s)	40, 745, 892
PpsI	GAGTC	3 cut(s)	40, 745, 892
PshAI	GACNNNNGTC	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	208
PspEI	GGTNACC	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	808
PspN4I	GGNNCC	4 cut(s)	122, 173, 183, 813
PspPI	GGNCC	2 cut(s)	181, 812
SacI	GAGCTC	1 cut(s)	208
SatI	GCNGC	5 cut(s)	240, 243, 246, 505, 535
Sau96I	GGNCC	2 cut(s)	181, 812
SchI	GAGTC	3 cut(s)	40, 745, 892
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	856, 878
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
Sse9I	AATT	6 cut(s)	17, 62, 79, 316, 711, 903
SsiI	CCGC	9 cut(s)	108, 176, 185, 242, 245, 248, 254, 504, 520
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	3 cut(s)	41, 738, 822
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	437
StyI	CCWWGG	2 cut(s)	209, 636
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	4 cut(s)	549, 709, 766, 780
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	6 cut(s)	17, 62, 79, 316, 711, 903
TauI	GCSGC	3 cut(s)	245, 248, 507
TfiI	GAWTC	3 cut(s)	262, 430, 488
TseI	GCWGC	2 cut(s)	239, 534
TspDTI	ATGAA	3 cut(s)	323, 422, 464
TspGWI	ACGGA	1 cut(s)	346
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	3 cut(s)	41, 738, 822
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.