Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

4176514 .. 4178365

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCAGACCCTTAAACGCATAGCAACACAGACCGAGCTCCACCGACTCTCGTCCACAATCGCCAAAACCCAATTCATTTCAGCCGCCAATCTCCGAGCCTTCTCCTCCAACTCAAAGAAAGGCGCCGGCGCCGGCGACGACGACTGGAACGACTCGTGGGAGACGGCGTGGCTCCCACCCGACCTCTCGGGAAACAACAGCAGAGCTCCATGGGAGACCGACGTCAATTTCTCGTCTCCCGAGTCGAGCATCGTGCTTCCGTCGGACGCCGACCCCGAGACGAAGGCGTTCGTGGAGGACATGAACGAGAATTGGAACGAGAGGCGGAAACCCAAAGAGGAAAGGAAGCAGAATCAGCAGAGCGAGAGTGGGTCGTCACTTTATAGCTTGGAGAGCTTGAAGAAGGACTATCGGGTGAAGAAACAGAGGATTCACGCTGGGCTTTGGATGAAGGAGATTGAGAAGCAGGAGGAGGCTAAATTGGTCGACTCGAATTCGTTTGGCGGTGGCGACGACATCGAGCGATTGCTTGATAGTTGCTCTGACATTTTTGACTCCCCTAACAACGATTTGGAGAACTCTAAAGCACCGAGTGCTTCCGACTACAAAAACAAACCTGATGGTTGGGAAACTACATCTAAGCCTCAGGAGGGAAATATATGGGAGATGACGCAAAGAGAAGAAGACATTCTTCTTCAAGAGTTTGAGCGTCGGATTGCATACAATAAATTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGCCGGAGGAGACCAATTGATGGGTGGAAATACATGATAGAGGAGTTAGGGCCAAACGCGAGGAAAGGAAGGGGTTCTGTTTCAAGGCTACCAAGTCTATCCGATGCATCAACCCAACCCTTCAAGGAGGAGAAGACTCCGATGAGCAGCAGCAGTCTTTCCCCCTATAAGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.8

Weight (kDa)

5.44

Isoelectric Point (pI)

67.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB1I	GGYRCC	2 cut(s)	122, 128
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	824
AciI	CCGC	3 cut(s)	84, 325, 504
AcsI	RAATTY	2 cut(s)	493, 728
AcyI	GRCGYC	4 cut(s)	123, 129, 222, 267
AdeI	CACNNNGTG	1 cut(s)	593
AfiI	CCNNNNNNNGG	3 cut(s)	650, 785, 934
AgsI	TTSAA	4 cut(s)	400, 698, 849, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	4 cut(s)	37, 206, 387, 396
AluI	AGCT	4 cut(s)	37, 206, 387, 396
Alw21I	GWGCWC	2 cut(s)	39, 208
Alw26I	GTCTC	5 cut(s)	155, 209, 240, 272, 769
Ama87I	CYCGRG	3 cut(s)	187, 239, 275
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	2 cut(s)	912, 915
ApoI	RAATTY	2 cut(s)	493, 728
Asp700I	GAANNNNTTC	3 cut(s)	287, 687, 838
AspLEI	GCGC	2 cut(s)	125, 131
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	3 cut(s)	187, 239, 275
AxyI	CCTNAGG	1 cut(s)	645
BanI	GGYRCC	2 cut(s)	122, 128
BanII	GRGCYC	2 cut(s)	39, 208
BauI	CACGAG	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	690, 905
Bbv12I	GWGCWC	2 cut(s)	39, 208
BbvI	GCAGC	2 cut(s)	924, 927
BccI	CCATC	2 cut(s)	614, 779
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcoDI	GTCTC	5 cut(s)	155, 209, 240, 272, 769
BfaI	CTAG	1 cut(s)	741
BfoI	RGCGCY	2 cut(s)	126, 132
BisI	GCNGC	3 cut(s)	84, 913, 916
BlsI	GCNGC	3 cut(s)	85, 914, 917
BmeT110I	CYCGRG	3 cut(s)	187, 239, 275
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	3 cut(s)	124, 130, 173
BmsI	GCATC	3 cut(s)	258, 859, 881
BoxI	GACNNNNGTC	2 cut(s)	49, 221
BpiI	GAAGAC	2 cut(s)	690, 905
BsaHI	GRCGYC	4 cut(s)	123, 129, 222, 267
BsaI	GGTCTC	2 cut(s)	209, 769
BsaJI	CCNNGG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	650, 785, 934
Bse118I	RCCGGY	2 cut(s)	125, 131
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	650, 785, 934
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	5 cut(s)	94, 485, 787, 821, 908
BseXI	GCAGC	2 cut(s)	924, 927
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	1 cut(s)	817
BshNI	GGYRCC	2 cut(s)	122, 128
BsiHKAI	GWGCWC	2 cut(s)	39, 208
BsiHKCI	CYCGRG	3 cut(s)	187, 239, 275
BsiSI	CCGG	3 cut(s)	126, 132, 769
BslI	CCNNNNNNNGG	3 cut(s)	650, 785, 934
BsmAI	GTCTC	5 cut(s)	155, 209, 240, 272, 769
BsmBI	CGTCTC	3 cut(s)	155, 240, 272
BsnI	GGCC	1 cut(s)	817
Bso31I	GGTCTC	2 cut(s)	209, 769
BsoBI	CYCGRG	3 cut(s)	187, 239, 275
Bsp1286I	GDGCHC	2 cut(s)	39, 208
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	3 cut(s)	84, 325, 504
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	3 cut(s)	124, 130, 173
BspT107I	GGYRCC	2 cut(s)	122, 128
BspTNI	GGTCTC	2 cut(s)	209, 769
BsrFI	RCCGGY	2 cut(s)	125, 131
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	2 cut(s)	125, 131
BssECI	CCNNGG	1 cut(s)	209
BssNI	GRCGYC	4 cut(s)	123, 129, 222, 267
BssSI	CACGAG	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	154
BstACI	GRCGYC	4 cut(s)	123, 129, 222, 267
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	127, 133
BstDEI	CTNAG	2 cut(s)	639, 645
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	2 cut(s)	126, 132
BstHHI	GCGC	2 cut(s)	125, 131
BstMAI	GTCTC	5 cut(s)	155, 209, 240, 272, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 393, 593
BstPAI	GACNNNNGTC	2 cut(s)	49, 221
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	924, 927
BstV2I	GAAGAC	2 cut(s)	690, 905
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	817
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	127, 133
CfoI	GCGC	2 cut(s)	125, 131
Cfr10I	RCCGGY	2 cut(s)	125, 131
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	3 cut(s)	275, 679, 698
CviAII	CATG	3 cut(s)	210, 301, 799
DdeI	CTNAG	2 cut(s)	639, 645
DinI	GGCGCC	2 cut(s)	124, 130
DraIII	CACNNNGTG	1 cut(s)	593
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	2 cut(s)	37, 206
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	2 cut(s)	39, 208
Eco31I	GGTCTC	2 cut(s)	209, 769
Eco53kI	GAGCTC	2 cut(s)	37, 206
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	3 cut(s)	187, 239, 275
EcoICRI	GAGCTC	2 cut(s)	37, 206
EcoRI	GAATTC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	874
EcoT38I	GRGCYC	2 cut(s)	39, 208
EgeI	GGCGCC	2 cut(s)	124, 130
EheI	GGCGCC	2 cut(s)	124, 130
ErhI	CCWWGG	1 cut(s)	209
Esp3I	CGTCTC	3 cut(s)	155, 240, 272
FaeI	CATG	3 cut(s)	213, 304, 802
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FatI	CATG	3 cut(s)	209, 300, 798
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	84, 913, 916
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	2 cut(s)	39, 208
Fsp4HI	GCNGC	3 cut(s)	84, 913, 916
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	2 cut(s)	124, 130
GluI	GCNGC	3 cut(s)	84, 913, 916
GsaI	CCCAGC	1 cut(s)	441
HaeII	RGCGCY	2 cut(s)	126, 132
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	3 cut(s)	126, 132, 769
HgaI	GACGC	3 cut(s)	275, 679, 698
HhaI	GCGC	2 cut(s)	125, 131
Hin1I	GRCGYC	4 cut(s)	123, 129, 222, 267
Hin1II	CATG	3 cut(s)	213, 304, 802
Hin6I	GCGC	2 cut(s)	123, 129
HinP1I	GCGC	2 cut(s)	123, 129
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	9 cut(s)	45, 152, 242, 352, 430, 488, 554, 754, 901
HpaII	CCGG	3 cut(s)	126, 132, 769
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	54, 487
Hpy188I	TCNGA	8 cut(s)	95, 265, 544, 601, 714, 735, 868, 906
Hpy188III	TCNNGA	5 cut(s)	189, 239, 647, 698, 751
Hpy8I	GTNNAC	2 cut(s)	54, 487
Hpy99I	CGWCG	6 cut(s)	140, 143, 224, 265, 515, 714
HpyAV	CCTTC	6 cut(s)	109, 277, 397, 445, 828, 895
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	4, 719, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 393, 593
HpyF3I	CTNAG	2 cut(s)	639, 645
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	4 cut(s)	123, 129, 222, 267
Hsp92II	CATG	3 cut(s)	213, 304, 802
HspAI	GCGC	2 cut(s)	123, 129
KasI	GGCGCC	2 cut(s)	122, 128
KroI	GCCGGC	2 cut(s)	125, 131
KroNI	GCCGGC	2 cut(s)	127, 133
LmnI	GCTCC	3 cut(s)	42, 177, 211
LpnPI	CCDG	8 cut(s)	130, 139, 145, 423, 452, 630, 632, 782
Lsp1109I	GCAGC	2 cut(s)	924, 927
LweI	GCATC	3 cut(s)	258, 859, 881
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	375
MboII	GAAGA	7 cut(s)	412, 430, 683, 686, 692, 695, 910
MfeI	CAATTG	1 cut(s)	780
MhlI	GDGCHC	2 cut(s)	39, 208
MluCI	AATT	7 cut(s)	71, 226, 310, 479, 493, 728, 780
Mly113I	GGCGCC	2 cut(s)	123, 129
MlyI	GAGTC	7 cut(s)	39, 146, 251, 482, 548, 748, 895
MmeI	TCCRAC	4 cut(s)	132, 243, 624, 692
Mph1103I	ATGCAT	1 cut(s)	874
MreI	CGCCGGCG	2 cut(s)	125, 131
MroNI	GCCGGC	2 cut(s)	125, 131
MroXI	GAANNNNTTC	3 cut(s)	287, 687, 838
MseI	TTAA	1 cut(s)	12
MspI	CCGG	3 cut(s)	126, 132, 769
MunI	CAATTG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	3 cut(s)	355, 393, 593
NaeI	GCCGGC	2 cut(s)	127, 133
NarI	GGCGCC	2 cut(s)	123, 129
NcoI	CCATGG	1 cut(s)	209
NgoMIV	GCCGGC	2 cut(s)	125, 131
NlaIII	CATG	3 cut(s)	213, 304, 802
NlaIV	GGNNCC	3 cut(s)	124, 130, 173
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 273
PdiI	GCCGGC	2 cut(s)	127, 133
PdmI	GAANNNNTTC	3 cut(s)	287, 687, 838
PfeI	GAWTC	2 cut(s)	352, 430
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	3 cut(s)	85, 914, 917
PleI	GAGTC	7 cut(s)	39, 146, 250, 482, 548, 748, 895
PluTI	GGCGCC	2 cut(s)	126, 132
PpsI	GAGTC	7 cut(s)	39, 146, 250, 482, 548, 748, 895
PshAI	GACNNNNGTC	2 cut(s)	49, 221
Psp124BI	GAGCTC	2 cut(s)	39, 208
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	124, 130, 173
PspPI	GGNCC	1 cut(s)	815
SacI	GAGCTC	2 cut(s)	39, 208
SalI	GTCGAC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	84, 913, 916
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	7 cut(s)	39, 146, 251, 482, 548, 748, 895
SduI	GDGCHC	2 cut(s)	39, 208
SetI	ASST	8 cut(s)	39, 186, 208, 225, 389, 398, 619, 944
SfaNI	GCATC	3 cut(s)	258, 859, 881
SfoI	GGCGCC	2 cut(s)	124, 130
SgrAI	CRCCGGYG	2 cut(s)	125, 131
Sse9I	AATT	7 cut(s)	71, 226, 310, 479, 493, 728, 780
SsiI	CCGC	3 cut(s)	84, 325, 504
SspDI	GGCGCC	2 cut(s)	122, 128
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	2 cut(s)	39, 208
StyI	CCWWGG	1 cut(s)	209
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	245, 486, 491, 519
TaqII	GACCGA	2 cut(s)	47, 233
TasI	AATT	7 cut(s)	71, 226, 310, 479, 493, 728, 780
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	352, 430
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	912, 915
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	3 cut(s)	64, 317, 464
TspGWI	ACGGA	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	785
XapI	RAATTY	2 cut(s)	493, 728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	3 cut(s)	287, 687, 838
XspI	CTAG	1 cut(s)	741
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.