Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

64979692 .. 64981553

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAGACCCTTGTGAAATTAGCAACGAAGCCTACTCTGCGTAACACTCTGAGCAAAACCCAATTCACCTCCACCGTCAATTTCAAATCTTTCTCCACCAAACCCTCCGCGCCGCCCAATCGGAACCCTAAGAAAGCCGACGACGAGTGGAACGACGCGTGGGAGACCGCGTGGCTCCCGCCGGACCCGTCCTCCGAGAACGCCAGAGCTCCATGGGAGACCGACGAGAATCTCTCGCCGCCGTCTGCGGCGGCGGCGGCGGAGGAGTTCGTGATTCCCTCCGACGCCGACCCAGAGACGAAGGCGTTTGTGGAGGACATGAATGCGAATTGGGACGAGAGACGGAAACCCAAGGAGGAGAAGAAACAGCAGCAGAGTGAGAGTGGGAAGCTTTATAGCTTGGAGAATATAAAGAAGGACTATAGGTTGAAGAAGCAGAGGATTCATGCCGGGCTTTGGATGAAGGAGATTGAGAAGCAACAAGAGGCTAAATTAGCTGATTCCGGTTCCATTGGTGGCGGTGACGATATCGAACGCTTGCTTGATAGCTGCTCCGATATTTTTGATTCTACGAACGATGATGTGGAAAATGCGAAAGCACCGAGCGCTGATGATTTCAAGAACAAGCCTGATGGTTGGGAAACGACAGCCAAGGCTGAAGAGGGAAGTGTGTGGGAGATGACACAGAGGGAAGAAGATATCCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTATAATAAGTTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGTCGAAGGAGACCAATCGATGGGTGGAAGTACATGATAGAGGAGCTGGGGCCAAATGCTAGGAAGGGAAAAGGTGCTGTTTCAAGGTTACCAAATTTATCCGATGCATCAACCCAACCCTTCAAGGAGGAGAGGACTCCAATTAGCACCAGTCTTACCTCCTACAAGGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.05

Weight (kDa)

5.28

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	3 cut(s)	110, 158, 170
AcsI	RAATTY	1 cut(s)	871
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	809
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	2 cut(s)	456, 797
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	85, 430, 619, 861, 901
AluBI	AGCT	6 cut(s)	209, 391, 399, 497, 549, 823
AluI	AGCT	6 cut(s)	209, 391, 399, 497, 549, 823
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	5 cut(s)	158, 212, 290, 334, 781
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	2 cut(s)	370, 549
ApoI	RAATTY	1 cut(s)	871
AspLEI	GCGC	2 cut(s)	112, 608
AspS9I	GGNCC	2 cut(s)	184, 827
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	58, 533
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	382, 536
BccI	CCATC	2 cut(s)	626, 791
BceAI	ACGGC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	5 cut(s)	158, 212, 290, 334, 781
BfaI	CTAG	2 cut(s)	753, 837
BfmI	CTRYAG	1 cut(s)	421
BfoI	RGCGCY	1 cut(s)	609
BisI	GCNGC	8 cut(s)	113, 239, 249, 252, 255, 258, 371, 550
BlsI	GCNGC	8 cut(s)	114, 240, 250, 253, 256, 259, 372, 551
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	184, 827
BmiI	GGNNCC	5 cut(s)	125, 176, 186, 508, 828
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	871, 893
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuMI	CCSGG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	3 cut(s)	158, 212, 781
BsaJI	CCNNGG	3 cut(s)	212, 351, 651
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 176, 185, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 797
Bse1I	ACTGG	1 cut(s)	927
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	212, 351, 651
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	456, 797
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	4 cut(s)	278, 371, 833, 920
BseXI	GCAGC	2 cut(s)	382, 536
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	3 cut(s)	110, 158, 170
BshFI	GGCC	1 cut(s)	829
BshVI	ATCGAT	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	182, 450, 504
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	456, 797
BsmAI	GTCTC	5 cut(s)	158, 212, 290, 334, 781
BsmBI	CGTCTC	2 cut(s)	290, 334
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	829
Bso31I	GGTCTC	3 cut(s)	158, 212, 781
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	212
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	795
BspFNI	CGCG	3 cut(s)	110, 158, 170
BspLI	GGNNCC	5 cut(s)	125, 176, 186, 508, 828
BspTNI	GGTCTC	3 cut(s)	158, 212, 781
BsrI	ACTGG	1 cut(s)	927
BssECI	CCNNGG	3 cut(s)	212, 351, 651
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	3 cut(s)	212, 351, 651
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	50, 129
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	864
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	3 cut(s)	110, 158, 170
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	112, 608
BstMAI	GTCTC	5 cut(s)	158, 212, 290, 334, 781
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 254, 257, 494, 605
BstPI	GGTNACC	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	421
BstUI	CGCG	3 cut(s)	110, 158, 170
BstV1I	GCAGC	2 cut(s)	382, 536
Bsu15I	ATCGAT	1 cut(s)	795
BsuRI	GGCC	1 cut(s)	829
BsuTUI	ATCGAT	1 cut(s)	795
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	539
CfoI	GCGC	2 cut(s)	112, 608
Cfr13I	GGNCC	2 cut(s)	184, 827
ClaI	ATCGAT	1 cut(s)	795
CseI	GACGC	3 cut(s)	164, 293, 710
Csp6I	GTAC	1 cut(s)	808
CviAII	CATG	4 cut(s)	213, 319, 446, 811
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	2 cut(s)	50, 129
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	212, 351, 651
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	3 cut(s)	158, 212, 781
Eco32I	GATATC	2 cut(s)	529, 700
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	678
Eco91I	GGTNACC	1 cut(s)	864
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	864
EcoRV	GATATC	2 cut(s)	529, 700
EcoT14I	CCWWGG	3 cut(s)	212, 351, 651
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	212, 351, 651
Esp3I	CGTCTC	2 cut(s)	290, 334
FaeI	CATG	4 cut(s)	216, 322, 449, 814
FaiI	YATR	9 cut(s)	214, 320, 396, 410, 423, 447, 735, 773, 812
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	212, 318, 445, 810
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	8 cut(s)	113, 239, 249, 252, 255, 258, 371, 550
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	8 cut(s)	113, 239, 249, 252, 255, 258, 371, 550
FspBI	CTAG	2 cut(s)	753, 837
GlaI	GCGC	2 cut(s)	111, 607
GluI	GCNGC	8 cut(s)	113, 239, 249, 252, 255, 258, 371, 550
GsaI	CCCAGC	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	829
HapII	CCGG	3 cut(s)	182, 450, 504
HgaI	GACGC	3 cut(s)	164, 293, 710
HhaI	GCGC	2 cut(s)	112, 608
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	216, 322, 449, 814
Hin6I	GCGC	2 cut(s)	110, 606
HinP1I	GCGC	2 cut(s)	110, 606
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	7 cut(s)	229, 274, 442, 500, 566, 766, 913
HpaII	CCGG	3 cut(s)	182, 450, 504
HphI	GGTGA	2 cut(s)	58, 533
Hpy188I	TCNGA	7 cut(s)	51, 123, 196, 283, 556, 747, 880
Hpy188III	TCNNGA	3 cut(s)	271, 619, 763
Hpy99I	CGWCG	6 cut(s)	143, 146, 158, 227, 287, 726
HpyAV	CCTTC	7 cut(s)	295, 409, 457, 713, 777, 835, 907
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	4, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 254, 257, 494, 605
HpyF3I	CTNAG	2 cut(s)	50, 129
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	216, 322, 449, 814
HspAI	GCGC	2 cut(s)	110, 606
LmnI	GCTCC	4 cut(s)	180, 214, 557, 820
LpnPI	CCDG	8 cut(s)	195, 217, 306, 463, 517, 642, 809, 940
Lsp1109I	GCAGC	2 cut(s)	382, 536
LweI	GCATC	2 cut(s)	871, 893
MaeI	CTAG	2 cut(s)	753, 837
MaeIII	GTNAC	3 cut(s)	41, 521, 864
MboII	GAAGA	5 cut(s)	373, 442, 671, 704, 707
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	17, 62, 79, 328, 491, 726, 871, 918
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	760, 907
MmeI	TCCRAC	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	886
MspI	CCGG	3 cut(s)	182, 450, 504
MspR9I	CCNGG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	328
MvnI	CGCG	3 cut(s)	110, 158, 170
MwoI	GCNNNNNNNGC	5 cut(s)	37, 254, 257, 494, 605
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	212
NlaIII	CATG	4 cut(s)	216, 322, 449, 814
NlaIV	GGNNCC	5 cut(s)	125, 176, 186, 508, 828
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	886
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	5 cut(s)	229, 274, 442, 500, 566
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	8 cut(s)	114, 240, 250, 253, 256, 259, 372, 551
PleI	GAGTC	2 cut(s)	760, 907
PpsI	GAGTC	2 cut(s)	760, 907
Psp124BI	GAGCTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	864
PspFI	CCCAGC	1 cut(s)	823
PspN4I	GGNNCC	5 cut(s)	125, 176, 186, 508, 828
PspPI	GGNCC	2 cut(s)	184, 827
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	8 cut(s)	113, 239, 249, 252, 255, 258, 371, 550
Sau96I	GGNCC	2 cut(s)	184, 827
SchI	GAGTC	2 cut(s)	760, 907
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	871, 893
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	17, 62, 79, 328, 491, 726, 871, 918
SspMI	CTAG	2 cut(s)	753, 837
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	3 cut(s)	212, 351, 651
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	4 cut(s)	531, 724, 781, 795
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	8 cut(s)	17, 62, 79, 328, 491, 726, 871, 918
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	6 cut(s)	115, 241, 251, 254, 257, 260
TfiI	GAWTC	5 cut(s)	229, 274, 442, 500, 566
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	370, 549
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	335, 434, 476
TspGWI	ACGGA	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	798
XspI	CTAG	2 cut(s)	753, 837
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.