Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Forward (+)

27896256 .. 27898690

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G272100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAGGCCCTTAAACGCACAGCAACAAAGACCGAGTTCCAGAGACTCTCGTCCACAATCACCAAAACCCATTTCATATCCAGCACCAATTTCAGACCCTTCTCCTCCAACTCAAAGAAAGGCGACGACGACTGGAACGACGCCTGGGATACCGCCTGGCTCCCGCCCGACCTCTCGGGAAGTAGTAGCAGAGCTCCATGGGAGACCGACGTCAATTTCTCGTCTTCAGAGTCGAGCGTAGTGCTTCCGTCAGACGCAGACCTGGAGACCAAGGCGTTCGTGGAGGATATGAATGAGAATTGGAACGAGAGAAGAAAACCCAAAGAGGAAAATCCGCAGAAGCAACAGCAGCAGAGTGAGAATGGGTCGTCGCTTTATAGTTTGGATAGTATTAAGAAGGACTATAGGGTCAAGAAACAGAGGATCCATGCTGGCCTTTGGATGAAGGAGATTGAGAAGCAAGAGGAGGCTAAGTTGGCCGACTCGAATTCTGTCGGGGGCGGGGACGATATCGAGCGATTGCTCGATAGCTGCTCCGACATTTTTGATTCTGCCAACAACGATTTGGAAAACTCTAAAGTCCCAAGTGCTTCCGACTTCAAAAACAAACCGGATGGTTGGGAAACGACATCCAAGGCTAAGGATGGAAACGTATGGGAGATGACCCAGAGAGAAGAAGATATTCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTACAATAAATTTCAGTGTCTCTCAGTACTTCTGGTTGTGAATTCAACCCCTTGTTGCCTGGTAAAGAAAGACTGTTTATTCTGCATAATGGCACCACACCTACAGTTTTCTGCCGAAAAGAGTTTGAATATTGCTAGTTTTATCAAGACTCACATATTTAGCCGAAGGAGACCAATTGATGGGTGGAAATACATGATAGAGGAGCTAGGGCCAAATGCGAGGAAAGGGAAGGGTTCTGTTACAAGATTACCGAGTCTATCCGATGCATCAACCCAACCCTTTAAGGAGGAAAACAGTGCAATGAGCAGCAGCAGCATTATGCCCTTTAAGGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

39.76

Weight (kDa)

5.65

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	893
AciI	CCGC	4 cut(s)	153, 164, 335, 501
AclWI	GGATC	2 cut(s)	418, 431
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	487, 722, 754
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	141, 210
AfaI	GTAC	2 cut(s)	716, 741
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	601, 759, 841
AjnI	CCWGG	4 cut(s)	143, 155, 261, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	194, 531, 919
AluI	AGCT	3 cut(s)	194, 531, 919
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	5 cut(s)	37, 197, 260, 737, 877
AlwI	GGATC	2 cut(s)	418, 431
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	4 cut(s)	6, 433, 477, 923
ApeKI	GCWGC	5 cut(s)	349, 531, 1020, 1023, 1026
ApoI	RAATTY	3 cut(s)	487, 722, 754
Asp700I	GAANNNNTTC	1 cut(s)	681
AspS9I	GGNCC	2 cut(s)	7, 923
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	805
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	361, 518, 1032, 1035, 1038
BccI	CCATC	3 cut(s)	608, 638, 887
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	4 cut(s)	145, 157, 263, 773
BciVI	GTATCC	1 cut(s)	142
BcoDI	GTCTC	5 cut(s)	37, 197, 260, 737, 877
BfaI	CTAG	2 cut(s)	849, 920
BfmI	CTRYAG	2 cut(s)	403, 815
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	5 cut(s)	350, 532, 1021, 1024, 1027
BlsI	GCNGC	5 cut(s)	351, 533, 1022, 1025, 1028
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	4 cut(s)	145, 157, 263, 773
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	7, 923
BmiI	GGNNCC	3 cut(s)	161, 425, 807
BmrFI	CCNGG	4 cut(s)	145, 157, 263, 773
BmsI	GCATC	2 cut(s)	967, 989
BoxI	GACNNNNGTC	2 cut(s)	49, 209
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	639
BsaHI	GRCGYC	2 cut(s)	141, 210
BsaI	GGTCTC	3 cut(s)	197, 260, 877
BsaJI	CCNNGG	4 cut(s)	144, 197, 270, 633
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	4 cut(s)	145, 157, 263, 773
BseDI	CCNNGG	4 cut(s)	144, 197, 270, 633
BseGI	GGATG	4 cut(s)	447, 619, 629, 649
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	3 cut(s)	94, 479, 929
BseXI	GCAGC	5 cut(s)	361, 518, 1032, 1035, 1038
BshFI	GGCC	4 cut(s)	8, 435, 479, 925
BshNI	GGYRCC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	2 cut(s)	518, 566
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	5 cut(s)	37, 197, 260, 737, 877
BsmFI	GGGAC	2 cut(s)	518, 566
BsnI	GGCC	4 cut(s)	8, 435, 479, 925
Bso31I	GGTCTC	3 cut(s)	197, 260, 877
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	4 cut(s)	153, 164, 335, 501
BspANI	GGCC	4 cut(s)	8, 435, 479, 925
BspCNI	CTCAG	1 cut(s)	749
BspLI	GGNNCC	3 cut(s)	161, 425, 807
BspPI	GGATC	2 cut(s)	418, 431
BspT107I	GGYRCC	1 cut(s)	805
BspTNI	GGTCTC	3 cut(s)	197, 260, 877
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	144, 197, 270, 633
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	2 cut(s)	141, 210
BssT1I	CCWWGG	3 cut(s)	197, 270, 633
Bst2UI	CCWGG	4 cut(s)	145, 157, 263, 773
Bst4CI	ACNGT	3 cut(s)	788, 819, 1010
BstACI	GRCGYC	2 cut(s)	141, 210
BstC8I	GCNNGC	2 cut(s)	6, 433
BstDEI	CTNAG	3 cut(s)	471, 639, 736
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	4 cut(s)	447, 619, 629, 649
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	5 cut(s)	37, 197, 260, 737, 877
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 476, 1026
BstNI	CCWGG	4 cut(s)	145, 157, 263, 773
BstPAI	GACNNNNGTC	2 cut(s)	49, 209
BstSCI	CCNGG	4 cut(s)	143, 155, 261, 771
BstSFI	CTRYAG	2 cut(s)	403, 815
BstV1I	GCAGC	5 cut(s)	361, 518, 1032, 1035, 1038
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	8, 435, 479, 925
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	4 cut(s)	447, 619, 629, 649
BtsIMutI	CAGTG	2 cut(s)	734, 1015
Cac8I	GCNNGC	2 cut(s)	6, 433
Cfr13I	GGNCC	2 cut(s)	7, 923
CseI	GACGC	3 cut(s)	149, 263, 692
Csp6I	GTAC	2 cut(s)	715, 740
CviAII	CATG	3 cut(s)	198, 428, 907
CviQI	GTAC	2 cut(s)	715, 740
DdeI	CTNAG	3 cut(s)	471, 639, 736
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	197, 270, 633
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	3 cut(s)	197, 260, 877
Eco32I	GATATC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	487, 754
EcoRII	CCWGG	4 cut(s)	143, 155, 261, 771
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	3 cut(s)	197, 270, 633
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	197, 270, 633
FaeI	CATG	3 cut(s)	201, 431, 910
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	2 cut(s)	518, 566
FatI	CATG	3 cut(s)	197, 427, 906
FauI	CCCGC	2 cut(s)	171, 494
Fnu4HI	GCNGC	5 cut(s)	350, 532, 1021, 1024, 1027
FokI	GGATG	4 cut(s)	454, 616, 626, 656
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	5 cut(s)	350, 532, 1021, 1024, 1027
FspBI	CTAG	2 cut(s)	849, 920
GluI	GCNGC	5 cut(s)	350, 532, 1021, 1024, 1027
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	8, 435, 479, 925
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	3 cut(s)	149, 263, 692
Hin1I	GRCGYC	2 cut(s)	141, 210
Hin1II	CATG	3 cut(s)	201, 431, 910
HinfI	GANTC	6 cut(s)	45, 230, 482, 548, 862, 967
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	6 cut(s)	95, 229, 253, 538, 595, 976
Hpy188III	TCNNGA	4 cut(s)	40, 177, 412, 859
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	6 cut(s)	128, 131, 143, 212, 373, 708
HpyAV	CCTTC	5 cut(s)	109, 391, 439, 873, 937
HpyCH4III	ACNGT	3 cut(s)	788, 819, 1010
HpyCH4IV	ACGT	2 cut(s)	210, 651
HpyCH4V	TGCA	4 cut(s)	4, 798, 980, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 476, 1026
HpyF3I	CTNAG	3 cut(s)	471, 639, 736
HpySE526I	ACGT	2 cut(s)	210, 651
Hsp92I	GRCGYC	2 cut(s)	141, 210
Hsp92II	CATG	3 cut(s)	201, 431, 910
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	4 cut(s)	165, 199, 539, 916
Lsp1109I	GCAGC	5 cut(s)	361, 518, 1032, 1035, 1038
LweI	GCATC	2 cut(s)	967, 989
MaeI	CTAG	2 cut(s)	849, 920
MaeII	ACGT	2 cut(s)	210, 651
MaeIII	GTNAC	1 cut(s)	952
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	5 cut(s)	216, 324, 677, 686, 689
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	8 cut(s)	88, 214, 298, 487, 708, 722, 754, 888
MlyI	GAGTC	5 cut(s)	39, 239, 476, 856, 976
MmeI	TCCRAC	3 cut(s)	132, 561, 618
Mph1103I	ATGCAT	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	4 cut(s)	12, 393, 996, 1041
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	4 cut(s)	145, 157, 263, 773
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	4 cut(s)	145, 157, 263, 773
MwoI	GCNNNNNNNGC	3 cut(s)	349, 476, 1026
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	3 cut(s)	201, 431, 910
NlaIV	GGNNCC	3 cut(s)	161, 425, 807
NsiI	ATGCAT	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	5 cut(s)	351, 533, 1022, 1025, 1028
PleI	GAGTC	5 cut(s)	39, 238, 476, 856, 975
PpsI	GAGTC	5 cut(s)	39, 238, 476, 856, 975
PshAI	GACNNNNGTC	2 cut(s)	49, 209
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	4 cut(s)	143, 155, 261, 771
PspGI	CCWGG	4 cut(s)	143, 155, 261, 771
PspN4I	GGNNCC	3 cut(s)	161, 425, 807
PspPI	GGNCC	2 cut(s)	7, 923
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	716, 741
RsaNI	GTAC	2 cut(s)	715, 740
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	12, 393, 996, 1041
SatI	GCNGC	5 cut(s)	350, 532, 1021, 1024, 1027
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	2 cut(s)	7, 923
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	5 cut(s)	39, 239, 476, 856, 976
ScrFI	CCNGG	4 cut(s)	145, 157, 263, 773
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	174, 196, 213, 264, 533, 654, 816, 921, 1052
SfaNI	GCATC	2 cut(s)	967, 989
SfcI	CTRYAG	2 cut(s)	403, 815
Sse9I	AATT	8 cut(s)	88, 214, 298, 487, 708, 722, 754, 888
SsiI	CCGC	4 cut(s)	153, 164, 335, 501
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	2 cut(s)	849, 920
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	4 cut(s)	143, 155, 261, 771
StyI	CCWWGG	3 cut(s)	197, 270, 633
TaaI	ACNGT	3 cut(s)	788, 819, 1010
TaiI	ACGT	2 cut(s)	213, 654
TaqI	TCGA	5 cut(s)	233, 485, 513, 525, 706
TaqII	GACCGA	2 cut(s)	47, 221
TasI	AATT	8 cut(s)	88, 214, 298, 487, 708, 722, 754, 888
TatI	WGTACW	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	4 cut(s)	12, 393, 996, 1041
Tru9I	TTAA	4 cut(s)	12, 393, 996, 1041
TscAI	CASTG	2 cut(s)	734, 1015
TseI	GCWGC	5 cut(s)	349, 531, 1020, 1023, 1026
TspDTI	ATGAA	3 cut(s)	64, 305, 458
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	734, 1015
Van91I	CCANNNNNTGG	1 cut(s)	893
XapI	RAATTY	3 cut(s)	487, 722, 754
XcmI	CCANNNNNNNNNTGG	3 cut(s)	277, 562, 894
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	849, 920
ZraI	GACGTC	1 cut(s)	211
ZrmI	AGTACT	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.