Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

59885274 .. 59886833

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCAGACCCTTGTGAAATTAGCAACGAAGCCTACTCTGCGTAACACTCTGAGCAAAACCCAATTCATCTCCACCGTCAATTTCAAATCTTTGTCCACCAAACCCTCCGCGCCGCCCAATCGGAACCCTAAGAAAGCCGACGACGAGTGGAACGACGCGTGGGAGACCGCGTGGCTCCCGCCGGACCCATCCTCCGAGAACGCCAGAGCTCCATGGGAGACCGACGAGAATCTCTCGGCGGCGGCCGTGATTCCCTCCGACGCCGACCCCGAGACGAAGGCGTTTGTGGAGGACATGAATGCGAATTGGGACGAGAGACGGAAACCAAAGGAGGAGAAGAAACAGCAGCAGAGTGAGAGTGGGAAGCTTTATAGCTTGGAGAATATAAAGAAGGACTATAGGTTGAAGAAGCAGAGGATTCATGCCGGGCTTTGGATGAAGGAGATTGAGAAGCAGCAAGAGGCTAAATTAGCTGATTCCGGTTCCATTGGTGGCGGTGACGACATCGAACGCTTGCTTGATAGCTGCTCCGATATCTTCGATTCTACCAACAATGATTTGGAAAATGCGAAAGTGCCGAGCGCTGATGATTTCAAGAACAAGCCGGATGGTTGGGAAACGACAGCCAAGGCTGAAGAGGGAAGTGTGTGGGAGATGACACAGAGGGAAGAAGATATCCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTATAATAAGTTTCAGATTGCTAGTTTCATCAAGACTCACATATTTAGTCGAAGGAGGCCAATCGATGGGTGGAAATACATGATAGAGGAGCTGGGGCCAAATGCTAGGAAGGGAAAAGGTGCTGTTTCAAGGTTACCAAATTTATCCGATGCATCAACCCAACCCTTCAAGGAGGAGAGGACTCCAATTAGCACCAGTCTTACCTCCTACAAGGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.24

Weight (kDa)

5.59

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	773
AccII	CGCG	3 cut(s)	110, 158, 170
AciI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	261
AfeI	AGCGCT	1 cut(s)	583
AfiI	CCNNNNNNNGG	2 cut(s)	432, 773
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	85, 406, 595, 837, 877
AluBI	AGCT	6 cut(s)	209, 367, 375, 473, 525, 799
AluI	AGCT	6 cut(s)	209, 367, 375, 473, 525, 799
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	4 cut(s)	158, 212, 266, 310
Ama87I	CYCGRG	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	3 cut(s)	243, 764, 803
ApeKI	GCWGC	3 cut(s)	346, 454, 525
ApoI	RAATTY	1 cut(s)	847
AspLEI	GCGC	2 cut(s)	112, 584
AspS9I	GGNCC	2 cut(s)	184, 803
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	358, 466, 512
BccI	CCATC	3 cut(s)	196, 602, 767
BceAI	ACGGC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	4 cut(s)	158, 212, 266, 310
BfaI	CTAG	2 cut(s)	729, 813
BfmI	CTRYAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 526
BlsI	GCNGC	6 cut(s)	114, 241, 244, 348, 456, 527
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	184, 803
BmiI	GGNNCC	5 cut(s)	125, 176, 186, 484, 804
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	847, 869
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuMI	CCSGG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	2 cut(s)	158, 212
BsaJI	CCNNGG	2 cut(s)	212, 627
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 176, 185, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 773
Bse1I	ACTGG	1 cut(s)	903
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	2 cut(s)	212, 627
BseGI	GGATG	3 cut(s)	188, 441, 613
BseLI	CCNNNNNNNGG	2 cut(s)	432, 773
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	903
BseRI	GAGGAG	3 cut(s)	347, 809, 896
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	358, 466, 512
BseYI	CCCAGC	1 cut(s)	799
Bsh1236I	CGCG	3 cut(s)	110, 158, 170
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	245, 766, 805
BshVI	ATCGAT	1 cut(s)	771
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	182, 426, 480, 605
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	432, 773
BsmAI	GTCTC	4 cut(s)	158, 212, 266, 310
BsmBI	CGTCTC	2 cut(s)	266, 310
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	245, 766, 805
Bso31I	GGTCTC	2 cut(s)	158, 212
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
BspANI	GGCC	3 cut(s)	245, 766, 805
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	771
BspFNI	CGCG	3 cut(s)	110, 158, 170
BspLI	GGNNCC	5 cut(s)	125, 176, 186, 484, 804
BspTNI	GGTCTC	2 cut(s)	158, 212
BsrI	ACTGG	1 cut(s)	903
BssECI	CCNNGG	2 cut(s)	212, 627
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	212, 627
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	50, 129
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	840
BstF5I	GGATG	3 cut(s)	188, 441, 613
BstFNI	CGCG	3 cut(s)	110, 158, 170
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	112, 584
BstMAI	GTCTC	4 cut(s)	158, 212, 266, 310
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 470
BstPI	GGTNACC	1 cut(s)	840
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	3 cut(s)	110, 158, 170
BstV1I	GCAGC	3 cut(s)	358, 466, 512
BstZI	CGGCCG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	245, 766, 805
BsuTUI	ATCGAT	1 cut(s)	771
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	188, 441, 613
Cac8I	GCNNGC	1 cut(s)	515
CfoI	GCGC	2 cut(s)	112, 584
Cfr13I	GGNCC	2 cut(s)	184, 803
ClaI	ATCGAT	1 cut(s)	771
CseI	GACGC	3 cut(s)	164, 269, 686
CviAII	CATG	4 cut(s)	213, 295, 422, 787
DdeI	CTNAG	2 cut(s)	50, 129
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	212, 627
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	2 cut(s)	158, 212
Eco32I	GATATC	2 cut(s)	535, 676
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	583
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	840
EcoRV	GATATC	2 cut(s)	535, 676
EcoT14I	CCWWGG	2 cut(s)	212, 627
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	212, 627
Esp3I	CGTCTC	2 cut(s)	266, 310
FaeI	CATG	4 cut(s)	216, 298, 425, 790
FaiI	YATR	9 cut(s)	214, 296, 372, 386, 399, 423, 711, 749, 788
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	4 cut(s)	212, 294, 421, 786
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 526
FokI	GGATG	3 cut(s)	175, 448, 620
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 526
FspBI	CTAG	2 cut(s)	729, 813
GlaI	GCGC	2 cut(s)	111, 583
GluI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 526
GsaI	CCCAGC	1 cut(s)	803
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	245, 766, 805
HapII	CCGG	4 cut(s)	182, 426, 480, 605
HgaI	GACGC	3 cut(s)	164, 269, 686
HhaI	GCGC	2 cut(s)	112, 584
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	216, 298, 425, 790
Hin6I	GCGC	2 cut(s)	110, 582
HinP1I	GCGC	2 cut(s)	110, 582
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	7 cut(s)	229, 250, 418, 476, 542, 742, 889
HpaII	CCGG	4 cut(s)	182, 426, 480, 605
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	7 cut(s)	51, 123, 196, 259, 532, 723, 856
Hpy188III	TCNNGA	2 cut(s)	595, 739
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	6 cut(s)	143, 146, 158, 227, 263, 702
HpyAV	CCTTC	7 cut(s)	271, 385, 433, 689, 753, 811, 883
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	4, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 470
HpyF3I	CTNAG	2 cut(s)	50, 129
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	216, 298, 425, 790
HspAI	GCGC	2 cut(s)	110, 582
LmnI	GCTCC	4 cut(s)	180, 214, 533, 796
LpnPI	CCDG	7 cut(s)	195, 217, 439, 493, 618, 785, 916
Lsp1109I	GCAGC	3 cut(s)	358, 466, 512
LweI	GCATC	2 cut(s)	847, 869
MaeI	CTAG	2 cut(s)	729, 813
MaeIII	GTNAC	3 cut(s)	41, 497, 840
MboII	GAAGA	6 cut(s)	349, 418, 529, 647, 680, 683
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	17, 62, 79, 304, 467, 702, 847, 894
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	736, 883
MmeI	TCCRAC	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	862
MspI	CCGG	4 cut(s)	182, 426, 480, 605
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	3 cut(s)	110, 158, 170
MwoI	GCNNNNNNNGC	2 cut(s)	37, 470
NciI	CCSGG	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	212
NlaIII	CATG	4 cut(s)	216, 298, 425, 790
NlaIV	GGNNCC	5 cut(s)	125, 176, 186, 484, 804
NmeAIII	GCCGAG	2 cut(s)	215, 603
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 267
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	5 cut(s)	229, 250, 418, 476, 542
PflMI	CCANNNNNTGG	1 cut(s)	773
PkrI	GCNGC	6 cut(s)	114, 241, 244, 348, 456, 527
PleI	GAGTC	2 cut(s)	736, 883
PpsI	GAGTC	2 cut(s)	736, 883
Psp124BI	GAGCTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	840
PspFI	CCCAGC	1 cut(s)	799
PspN4I	GGNNCC	5 cut(s)	125, 176, 186, 484, 804
PspPI	GGNCC	2 cut(s)	184, 803
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 526
Sau96I	GGNCC	2 cut(s)	184, 803
SchI	GAGTC	2 cut(s)	736, 883
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	847, 869
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	17, 62, 79, 304, 467, 702, 847, 894
SsiI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
SspMI	CTAG	2 cut(s)	729, 813
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	2 cut(s)	212, 627
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	507, 540, 700, 757, 771
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	8 cut(s)	17, 62, 79, 304, 467, 702, 847, 894
TauI	GCSGC	3 cut(s)	115, 242, 245
TfiI	GAWTC	5 cut(s)	229, 250, 418, 476, 542
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	3 cut(s)	346, 454, 525
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	55, 311, 410, 452, 724
TspGWI	ACGGA	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	773
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	2 cut(s)	556, 774
XspI	CTAG	2 cut(s)	729, 813
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.