Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001685.1

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Reverse (-)

18895 .. 20460

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001685.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgcagacccttgtgaaattagcaacgaatcctactctgcgtgacactctgagaaaaacccaattcatctccaccgtcaatttcaaatctctgtccaccaaaccctccgcgccgcccagtcggaaccctaagaaagccgacgacgagtggaacgacgcgtgggagaccgcgtggctcccgccggacccatcctccgagaacgccagagctccatgggagaacgacgagaatctctcggcggcggccgtggttccctccgacgccgaccccgagacgacggcgtttgtggaggacatgaatgcgaattgggacgagagacggaaacccaaggaggagaagaaacagcagcagagtgagagtgggaagctttatagcttggagaatataaagaaggactataggttgaagaagcagaggattcatgccgggctttggatgaaggagattgagaagcagcaagaggctaaattagctgattccggttccattggtggcggtgacgacgatatcgaacgcttgcttgatagctgctccgatatcttcgattctaccaacaatgatttggaaaatgcgaaagtgccgagcgctgatgatttcaagaacaagccggatggttgggaaacgacagccaaggctgaagagggaagtgtgtgggagatgacacagagggaagaagatatccttctccaagagtttgagcgtcgaattgcatataataagtttcagattgctagttttatcaagactcacatatttagtcgaagaaggccaatcgatgggtggaaatacatgatagaggagctggggccaaatgctaggaagggaaaaggtgctgtttcaaggttaccaaatttatccgatgcatcaacccaacccttcaaggaggagaggactccaattagcaccagtcttacctcctacaaggataggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

35.36

Weight (kDa)

5.27

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccII	CGCG	3 cut(s)	110, 158, 170
AciI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	261
AfeI	AGCGCT	1 cut(s)	586
AfiI	CCNNNNNNNGG	2 cut(s)	432, 776
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	85, 406, 598, 840, 880
AluBI	AGCT	6 cut(s)	209, 367, 375, 473, 528, 802
AluI	AGCT	6 cut(s)	209, 367, 375, 473, 528, 802
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	3 cut(s)	158, 266, 310
Ama87I	CYCGRG	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	586
AoxI	GGCC	3 cut(s)	243, 767, 806
ApeKI	GCWGC	3 cut(s)	346, 454, 528
ApoI	RAATTY	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	112, 587
AspS9I	GGNCC	2 cut(s)	184, 806
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	358, 466, 515
BccI	CCATC	3 cut(s)	196, 605, 770
BceAI	ACGGC	2 cut(s)	230, 294
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	158, 266, 310
BfaI	CTAG	2 cut(s)	732, 816
BfmI	CTRYAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	588
BisI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 529
BlsI	GCNGC	6 cut(s)	114, 241, 244, 348, 456, 530
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	184, 806
BmiI	GGNNCC	6 cut(s)	125, 176, 186, 252, 484, 807
BmrFI	CCNGG	1 cut(s)	427
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	850, 872
BmuI	ACTGGG	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuMI	CCSGG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	212, 246, 327, 630
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 176, 185, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 776
Bse1I	ACTGG	2 cut(s)	117, 906
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	4 cut(s)	212, 246, 327, 630
BseGI	GGATG	3 cut(s)	188, 441, 616
BseLI	CCNNNNNNNGG	2 cut(s)	432, 776
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	117, 906
BseRI	GAGGAG	3 cut(s)	347, 812, 899
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	358, 466, 515
BseYI	CCCAGC	1 cut(s)	802
Bsh1236I	CGCG	3 cut(s)	110, 158, 170
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	245, 769, 808
BshVI	ATCGAT	1 cut(s)	774
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	182, 426, 480, 608
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	432, 776
BsmAI	GTCTC	3 cut(s)	158, 266, 310
BsmBI	CGTCTC	2 cut(s)	266, 310
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	245, 769, 808
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
BspANI	GGCC	3 cut(s)	245, 769, 808
BspCNI	CTCAG	1 cut(s)	42
BspDI	ATCGAT	1 cut(s)	774
BspFNI	CGCG	3 cut(s)	110, 158, 170
BspLI	GGNNCC	6 cut(s)	125, 176, 186, 252, 484, 807
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	117, 906
BssECI	CCNNGG	4 cut(s)	212, 246, 327, 630
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	3 cut(s)	212, 327, 630
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	50, 129
BstDSI	CCRYGG	2 cut(s)	212, 246
BstEII	GGTNACC	1 cut(s)	843
BstF5I	GGATG	3 cut(s)	188, 441, 616
BstFNI	CGCG	3 cut(s)	110, 158, 170
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	112, 587
BstMAI	GTCTC	3 cut(s)	158, 266, 310
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	3 cut(s)	110, 158, 170
BstV1I	GCAGC	3 cut(s)	358, 466, 515
BstZI	CGGCCG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	245, 769, 808
BsuTUI	ATCGAT	1 cut(s)	774
BtgI	CCRYGG	2 cut(s)	212, 246
BtsCI	GGATG	3 cut(s)	188, 441, 616
Cac8I	GCNNGC	1 cut(s)	518
CfoI	GCGC	2 cut(s)	112, 587
Cfr13I	GGNCC	2 cut(s)	184, 806
ClaI	ATCGAT	1 cut(s)	774
CseI	GACGC	3 cut(s)	164, 269, 689
CviAII	CATG	4 cut(s)	213, 295, 422, 790
DdeI	CTNAG	2 cut(s)	50, 129
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	3 cut(s)	212, 327, 630
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	3 cut(s)	508, 538, 679
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	586
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	843
EcoRV	GATATC	3 cut(s)	508, 538, 679
EcoT14I	CCWWGG	3 cut(s)	212, 327, 630
EcoT22I	ATGCAT	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	212, 327, 630
Esp3I	CGTCTC	2 cut(s)	266, 310
FaeI	CATG	4 cut(s)	216, 298, 425, 793
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	4 cut(s)	212, 294, 421, 789
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 529
FokI	GGATG	3 cut(s)	175, 448, 623
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 529
FspBI	CTAG	2 cut(s)	732, 816
GlaI	GCGC	2 cut(s)	111, 586
GluI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 529
GsaI	CCCAGC	1 cut(s)	806
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	3 cut(s)	245, 769, 808
HapII	CCGG	4 cut(s)	182, 426, 480, 608
HgaI	GACGC	3 cut(s)	164, 269, 689
HhaI	GCGC	2 cut(s)	112, 587
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	216, 298, 425, 793
Hin6I	GCGC	2 cut(s)	110, 585
HinP1I	GCGC	2 cut(s)	110, 585
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	7 cut(s)	28, 229, 418, 476, 545, 745, 892
HpaII	CCGG	4 cut(s)	182, 426, 480, 608
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	7 cut(s)	51, 123, 196, 259, 535, 726, 859
Hpy188III	TCNNGA	2 cut(s)	598, 742
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	8 cut(s)	143, 146, 158, 227, 263, 280, 506, 705
HpyAV	CCTTC	6 cut(s)	385, 433, 692, 759, 814, 886
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	4, 710, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	2 cut(s)	50, 129
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	216, 298, 425, 793
HspAI	GCGC	2 cut(s)	110, 585
LmnI	GCTCC	4 cut(s)	180, 214, 536, 799
LpnPI	CCDG	8 cut(s)	130, 195, 217, 439, 493, 621, 788, 919
Lsp1109I	GCAGC	3 cut(s)	358, 466, 515
LweI	GCATC	2 cut(s)	850, 872
MaeI	CTAG	2 cut(s)	732, 816
MaeIII	GTNAC	3 cut(s)	41, 497, 843
MboII	GAAGA	7 cut(s)	349, 418, 532, 650, 683, 686, 774
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	17, 62, 79, 304, 467, 705, 850, 897
MluI	ACGCGT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	739, 886
MmeI	TCCRAC	2 cut(s)	101, 282
Mph1103I	ATGCAT	1 cut(s)	865
MspI	CCGG	4 cut(s)	182, 426, 480, 608
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	3 cut(s)	110, 158, 170
MwoI	GCNNNNNNNGC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	212
NlaIII	CATG	4 cut(s)	216, 298, 425, 793
NlaIV	GGNNCC	6 cut(s)	125, 176, 186, 252, 484, 807
NmeAIII	GCCGAG	2 cut(s)	215, 606
NmuCI	GTSAC	2 cut(s)	41, 497
NsiI	ATGCAT	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 267, 507
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	5 cut(s)	28, 229, 418, 476, 545
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	6 cut(s)	114, 241, 244, 348, 456, 530
PleI	GAGTC	2 cut(s)	739, 886
PpsI	GAGTC	2 cut(s)	739, 886
Psp124BI	GAGCTC	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	843
PspFI	CCCAGC	1 cut(s)	802
PspN4I	GGNNCC	6 cut(s)	125, 176, 186, 252, 484, 807
PspPI	GGNCC	2 cut(s)	184, 806
SacI	GAGCTC	1 cut(s)	211
SatI	GCNGC	6 cut(s)	113, 240, 243, 347, 455, 529
Sau96I	GGNCC	2 cut(s)	184, 806
SchI	GAGTC	2 cut(s)	739, 886
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	850, 872
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	17, 62, 79, 304, 467, 705, 850, 897
SsiI	CCGC	7 cut(s)	108, 113, 168, 179, 239, 242, 495
SspMI	CTAG	2 cut(s)	732, 816
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	3 cut(s)	212, 327, 630
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	510, 543, 703, 760, 774
TasI	AATT	8 cut(s)	17, 62, 79, 304, 467, 705, 850, 897
TauI	GCSGC	3 cut(s)	115, 242, 245
TfiI	GAWTC	5 cut(s)	28, 229, 418, 476, 545
TseFI	GTSAC	2 cut(s)	41, 497
TseI	GCWGC	3 cut(s)	346, 454, 528
Tsp45I	GTSAC	2 cut(s)	41, 497
TspDTI	ATGAA	4 cut(s)	55, 311, 410, 452
TspGWI	ACGGA	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	2 cut(s)	559, 777
XspI	CTAG	2 cut(s)	732, 816
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.