Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008642

Physical Location & Seq

Genomic Coordinates Forward (+)

8522731 .. 8528592

Gene Structure 5862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGCAAGCCCTTAAACGCATAGCGACAAAGACCGAGTTCCAGAGACTCTCATCCACAATCACCAAAACCCATTTCATATCCAGCACCAATTTCAGACCCTTCTCCTCCAACTCAAAGAAAGGCGACGATGACTGGAATGACGCCTGGGAGACCGCGTGGCTCCCGCCCGACCTCTCGGGAAGTAGTAGCAGAGCTCCATGGGAGGCCGATGTCAATTTCTCGTCTTCAGAGTCGAGCGTAGTGCTTCCCTCGGATGCGGACCTAGAGACCAAGGCGTTCGTGGAGGACATGAATGAGAATTGGAATGAGAGAAGAAAACCCAAAGAGGAAAAGCAGCAGAGTGAGAATGGGTCGTCGCTTTATAGCTTGGATAGTATTAAGAAGGATTATAGGATCAAGAAACAAAGGATTCATGCTGGCCTTTGGATGAAGGAGATTGAGAAGCAAGAGGAGGCTAAGTTGGCCGACTCGAATTCTTTTGGTGGTGGGGACGATATCGAGCGATTGCTCGATAGCTGCTCCGACATTTTTGATTCTGCCAACAATGATTTGGAAAACTCTAAAGCCCCGAGTGCTTCCGACTTCAAAAACAAACCGGATGGTTGGGAAACGACATCCAAGGCTAAGGATGGAAATGTATGGGAGATGACACAGAGAGAGGAAGATATTCTTCTCCAAGAGTTTGAGCGTCGAATTGCGTACAATAAATTTCAGATTGCTAGTTTTATCAAGACTCACATATTTAGCCGGAGGAGACCAATTGATGGGTGGAAATACATGATAGAGGAGCTAGGGCCAAATGCGAGGAAAGGGAAGGGTTCTGTTACAAGATTACCGAGTCTATCCGATGCATCAACCCAACCCTTTAAGGAGGAAAACAGTGCAATGAGTGGCAGCAGCATTATGCCCTTTAAGGAGAGGAAAATAGAAGATGCACATAAGTTGTTTGATGAGTTTCCTCAAGGAAATGACTTGATTTCATGGAATACTTTGATGGGTTATCTTCATGTGTCTCAGCCTCAAGTGATTGTAGATTTGTTTAAGAAAATGTGTAGGAGCTGTTTTGAAGCTAGTGTTACCACCGTTTTGAACCTTTTGTCTGCCATTGGTGATTTAGGAAGTTACCTTGGAGGAGAGTCTCTTCAAGGGTACTGCATCAACATTGGCTTTTGTTTGTATTTACAAGTGCTTTCTGCTTTGATTGATATGTATGCAAAGAATGGGCAAACTGATTTTGGACGTCGGATTTTTGATGGAGTTGCTGTGAAGGATGTTGTATTATGGAATTGTTTGGTAGATAGGTACGCAAAATGTGGCCTGGTACAAGAAGCAGTAGCTTTGTCGCGGTTGATGAGACTTGAAAGAATGAAACCCAATTCATCTACTTTGGCAGGACTGCTTTCGGCTTGTGCTGCTTCTGGGTCTCCAAGTGTAGGGAGTTGCATTAAGGATTATGTGGAAGAGGAGAACTTGGTTATGGATGCGGTTCTTGGTACAGCTCTGGTTGACATGTATGCTAAATGTGTGTTTTTGGAGAAGGCACTTAACATCTTTGAAAGCATGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

524

Amino Acids

58.76

Weight (kDa)

5.24

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02880
fragaria_vesca	FvH4_4g31560
malus_domestica	MD13G1073900.v1.1 MD16G1075100.v1.1
prunus_persica	Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.1G272100_v2.0.a1 Prupe.3G107100_v2.0.a1
pyrus_communis	pycom13g06600 pycom16g06520
rosa_chinensis	RchiOBHm_Chr4g0440071
rosa_laevigata	RLG00000006208
rosa_multiflora	Rmu_sc0001685.1_g000004 Rmu_sc0042879.1_g000001 Rmu_sc0043041.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381000
rosa_rugosa	Rorug04G0324100
rosa_samantha	Rh4AG374700 Rh4BG387100 Rh4CG401600 Rh4DG381300
rosa_wichuraiana	Rw4G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1243
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccII	CGCG	2 cut(s)	155, 1345
AciI	CCGC	5 cut(s)	153, 164, 257, 1345, 1484
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	472, 707
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	141, 1240
AfaI	GTAC	5 cut(s)	701, 1151, 1304, 1323, 1495
AfiI	CCNNNNNNNGG	2 cut(s)	764, 1433
AflIII	ACRYGT	1 cut(s)	1509
AgsI	TTSAA	6 cut(s)	586, 1067, 1090, 1145, 1361, 1556
AjnI	CCWGG	2 cut(s)	143, 1317
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	8 cut(s)	194, 366, 516, 790, 1059, 1070, 1337, 1499
AluI	AGCT	8 cut(s)	194, 366, 516, 790, 1059, 1070, 1337, 1499
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	8 cut(s)	37, 143, 260, 748, 1017, 1143, 1348, 1428
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	2 cut(s)	175, 568
AoxI	GGCC	5 cut(s)	204, 418, 462, 794, 1315
ApeKI	GCWGC	5 cut(s)	334, 516, 894, 897, 1412
ApoI	RAATTY	2 cut(s)	472, 707
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	259, 794
AsuHPI	GGTGA	2 cut(s)	52, 1121
AvaI	CYCGRG	2 cut(s)	175, 568
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	346, 503, 906, 909, 1399
BccI	CCATC	5 cut(s)	593, 623, 758, 988, 1247
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	2 cut(s)	145, 1319
BcoDI	GTCTC	8 cut(s)	37, 143, 260, 748, 1017, 1143, 1348, 1428
BfaI	CTAG	4 cut(s)	263, 720, 791, 1071
BisI	GCNGC	5 cut(s)	335, 517, 895, 898, 1413
BlsI	GCNGC	5 cut(s)	336, 518, 896, 899, 1414
Bme1390I	CCNGG	2 cut(s)	145, 1319
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	2 cut(s)	175, 568
BmgT120I	GGNCC	2 cut(s)	259, 794
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	145, 1319
BmsI	GCATC	6 cut(s)	244, 838, 860, 922, 1164, 1471
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	945, 1005
BsaHI	GRCGYC	2 cut(s)	141, 1240
BsaI	GGTCTC	4 cut(s)	143, 260, 748, 1428
BsaJI	CCNNGG	6 cut(s)	144, 197, 249, 270, 618, 1126
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 443, 473, 1248, 1278
Bsc4I	CCNNNNNNNGG	2 cut(s)	764, 1433
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	145, 1319
BseDI	CCNNGG	6 cut(s)	144, 197, 249, 270, 618, 1126
BseGI	GGATG	8 cut(s)	50, 259, 432, 604, 614, 634, 1276, 1486
BseLI	CCNNNNNNNGG	2 cut(s)	764, 1433
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	1 cut(s)	1028
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	6 cut(s)	94, 464, 766, 800, 1146, 1478
BseXI	GCAGC	5 cut(s)	346, 503, 906, 909, 1399
Bsh1236I	CGCG	2 cut(s)	155, 1345
BshFI	GGCC	5 cut(s)	206, 420, 464, 796, 1317
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	2 cut(s)	175, 568
BsiSI	CCGG	2 cut(s)	596, 748
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	764, 1433
BsmAI	GTCTC	8 cut(s)	37, 143, 260, 748, 1017, 1143, 1348, 1428
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	5 cut(s)	206, 420, 464, 796, 1317
Bso31I	GGTCTC	4 cut(s)	143, 260, 748, 1428
BsoBI	CYCGRG	2 cut(s)	175, 568
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	5 cut(s)	153, 164, 257, 1345, 1484
BspANI	GGCC	5 cut(s)	206, 420, 464, 796, 1317
BspCNI	CTCAG	1 cut(s)	1027
BspFNI	CGCG	2 cut(s)	155, 1345
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	4 cut(s)	143, 260, 748, 1428
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	6 cut(s)	144, 197, 249, 270, 618, 1126
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	2 cut(s)	141, 1240
BssT1I	CCWWGG	4 cut(s)	197, 270, 618, 1126
Bst2UI	CCWGG	2 cut(s)	145, 1319
Bst4CI	ACNGT	2 cut(s)	881, 1084
Bst6I	CTCTTC	2 cut(s)	1146, 1455
BstACI	GRCGYC	2 cut(s)	141, 1240
BstC8I	GCNNGC	2 cut(s)	6, 418
BstDEI	CTNAG	3 cut(s)	456, 624, 1014
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	8 cut(s)	50, 259, 432, 604, 614, 634, 1276, 1486
BstFNI	CGCG	2 cut(s)	155, 1345
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	8 cut(s)	37, 143, 260, 748, 1017, 1143, 1348, 1428
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 572, 1412
BstNI	CCWGG	2 cut(s)	145, 1319
BstNSI	RCATGY	1 cut(s)	1513
BstSCI	CCNGG	2 cut(s)	143, 1317
BstUI	CGCG	2 cut(s)	155, 1345
BstV1I	GCAGC	5 cut(s)	346, 503, 906, 909, 1399
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	5 cut(s)	206, 420, 464, 796, 1317
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	8 cut(s)	50, 259, 432, 604, 614, 634, 1276, 1486
BtsIMutI	CAGTG	1 cut(s)	886
Cac8I	GCNNGC	2 cut(s)	6, 418
Cfr13I	GGNCC	2 cut(s)	259, 794
CseI	GACGC	2 cut(s)	149, 677
Csp6I	GTAC	5 cut(s)	700, 1150, 1303, 1322, 1494
CviAII	CATG	8 cut(s)	198, 289, 413, 778, 981, 1007, 1510, 1561
CviQI	GTAC	5 cut(s)	700, 1150, 1303, 1322, 1494
DdeI	CTNAG	3 cut(s)	456, 624, 1014
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	1146, 1455
EarI	CTCTTC	2 cut(s)	1146, 1455
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	4 cut(s)	197, 270, 618, 1126
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	4 cut(s)	143, 260, 748, 1428
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	2 cut(s)	175, 568
EcoICRI	GAGCTC	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	143, 1317
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	4 cut(s)	197, 270, 618, 1126
EcoT22I	ATGCAT	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	4 cut(s)	197, 270, 618, 1126
FaeI	CATG	8 cut(s)	201, 292, 416, 781, 984, 1010, 1513, 1564
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	8 cut(s)	197, 288, 412, 777, 980, 1006, 1509, 1560
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	335, 517, 895, 898, 1413
FokI	GGATG	8 cut(s)	37, 266, 439, 601, 611, 641, 1283, 1493
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	5 cut(s)	335, 517, 895, 898, 1413
FspBI	CTAG	4 cut(s)	263, 720, 791, 1071
GluI	GCNGC	5 cut(s)	335, 517, 895, 898, 1413
HaeIII	GGCC	5 cut(s)	206, 420, 464, 796, 1317
HapII	CCGG	2 cut(s)	596, 748
HgaI	GACGC	2 cut(s)	149, 677
Hin1I	GRCGYC	2 cut(s)	141, 1240
Hin1II	CATG	8 cut(s)	201, 292, 416, 781, 984, 1010, 1513, 1564
HincII	GTYRAC	1 cut(s)	1507
HindII	GTYRAC	1 cut(s)	1507
HinfI	GANTC	8 cut(s)	45, 230, 409, 467, 533, 733, 838, 1136
HpaII	CCGG	2 cut(s)	596, 748
HphI	GGTGA	2 cut(s)	52, 1121
Hpy166II	GTNNAC	1 cut(s)	1507
Hpy188I	TCNGA	8 cut(s)	95, 229, 253, 523, 580, 714, 847, 1245
Hpy188III	TCNNGA	4 cut(s)	40, 177, 397, 730
Hpy8I	GTNNAC	1 cut(s)	1507
Hpy99I	CGWCG	4 cut(s)	128, 358, 693, 1245
HpyAV	CCTTC	6 cut(s)	109, 376, 424, 808, 1261, 1531
HpyCH4III	ACNGT	2 cut(s)	881, 1084
HpyCH4IV	ACGT	1 cut(s)	1240
HpyCH4V	TGCA	7 cut(s)	4, 851, 884, 935, 1155, 1214, 1443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 572, 1412
HpyF3I	CTNAG	3 cut(s)	456, 624, 1014
HpySE526I	ACGT	1 cut(s)	1240
Hsp92I	GRCGYC	2 cut(s)	141, 1240
Hsp92II	CATG	8 cut(s)	201, 292, 416, 781, 984, 1010, 1513, 1564
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	5 cut(s)	165, 199, 524, 787, 1056
Lsp1109I	GCAGC	5 cut(s)	346, 503, 906, 909, 1399
LweI	GCATC	6 cut(s)	244, 838, 860, 922, 1164, 1471
MaeI	CTAG	4 cut(s)	263, 720, 791, 1071
MaeII	ACGT	1 cut(s)	1240
MaeIII	GTNAC	3 cut(s)	823, 1075, 1121
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	8 cut(s)	216, 324, 662, 674, 941, 995, 1133, 1472
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	9 cut(s)	88, 214, 298, 472, 693, 707, 759, 1285, 1375
MlyI	GAGTC	6 cut(s)	39, 239, 461, 727, 847, 1145
MmeI	TCCRAC	4 cut(s)	132, 546, 603, 1223
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	7 cut(s)	12, 378, 867, 912, 1041, 1446, 1545
MspI	CCGG	2 cut(s)	596, 748
MspR9I	CCNGG	2 cut(s)	145, 1319
MunI	CAATTG	1 cut(s)	759
MvaI	CCWGG	2 cut(s)	145, 1319
MvnI	CGCG	2 cut(s)	155, 1345
MwoI	GCNNNNNNNGC	3 cut(s)	461, 572, 1412
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	8 cut(s)	201, 292, 416, 781, 984, 1010, 1513, 1564
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	1513
PciI	ACATGT	1 cut(s)	1509
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	409, 533
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	5 cut(s)	336, 518, 896, 899, 1414
PleI	GAGTC	6 cut(s)	39, 238, 461, 727, 846, 1144
PpsI	GAGTC	6 cut(s)	39, 238, 461, 727, 846, 1144
PscI	ACATGT	1 cut(s)	1509
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	143, 1317
PspGI	CCWGG	2 cut(s)	143, 1317
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	259, 794
RsaI	GTAC	5 cut(s)	701, 1151, 1304, 1323, 1495
RsaNI	GTAC	5 cut(s)	700, 1150, 1303, 1322, 1494
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	7 cut(s)	12, 378, 867, 912, 1041, 1446, 1545
SatI	GCNGC	5 cut(s)	335, 517, 895, 898, 1413
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	2 cut(s)	259, 794
SchI	GAGTC	6 cut(s)	39, 239, 461, 727, 847, 1145
ScrFI	CCNGG	2 cut(s)	145, 1319
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	6 cut(s)	244, 838, 860, 922, 1164, 1471
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	960, 1020
SmoI	CTYRAG	2 cut(s)	960, 1020
Sse9I	AATT	9 cut(s)	88, 214, 298, 472, 693, 707, 759, 1285, 1375
SsiI	CCGC	5 cut(s)	153, 164, 257, 1345, 1484
SspMI	CTAG	4 cut(s)	263, 720, 791, 1071
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	143, 1317
StyI	CCWWGG	4 cut(s)	197, 270, 618, 1126
TaaI	ACNGT	2 cut(s)	881, 1084
TaiI	ACGT	1 cut(s)	1243
TaqI	TCGA	5 cut(s)	233, 470, 498, 510, 691
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	9 cut(s)	88, 214, 298, 472, 693, 707, 759, 1285, 1375
TfiI	GAWTC	2 cut(s)	409, 533
Tru1I	TTAA	7 cut(s)	12, 378, 867, 912, 1041, 1446, 1545
Tru9I	TTAA	7 cut(s)	12, 378, 867, 912, 1041, 1446, 1545
TscAI	CASTG	1 cut(s)	886
TseI	GCWGC	5 cut(s)	334, 516, 894, 897, 1412
TspDTI	ATGAA	8 cut(s)	64, 305, 401, 443, 969, 995, 1368, 1382
TspRI	CASTG	1 cut(s)	886
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	472, 707
XceI	RCATGY	1 cut(s)	1513
XcmI	CCANNNNNNNNNTGG	3 cut(s)	277, 547, 765
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	4 cut(s)	263, 720, 791, 1071
ZraI	GACGTC	1 cut(s)	1241
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.