Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

2147192 .. 2148215

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTCCAACAGAGCTTAGAGAGGCTAGAATAGAAATTACCAAAGATTTTATAAAGAGAGCTGCTCTAAGGATTCAGCGTGAAAATCGGCGAAGGAATGATCCAGATGAAGATAAAAATGCTGAGACTAAATTGGCTTTAAAGCATTGTAAAGACATGGTTCTTGGTTCTAGTAAATTTGGGGATGATCGTCCTCTTACTGGTTGCTCCTTATCACGAGATGGAAAAATACTCGTCACATGTTCTCTTAGTGGGGTTCCTAAATTGTGGGAGGTGCCTCAAGTTACAAACAAGATTGTTGTCTTGAAAGGTCATAAAGAACATGTAACTGATGTAGTGTTCTCGTCTGTGGATGATGAATGTCTAGCAACTGCTTCTACTGATCGAACTGAAAAGATATGGAAAACGGATGGAACACTTCTACAAACTTTTAAAGCTTCTTCGGGTTTTGATTCGCTTGCAAGAGTTTGGGATCTTCGTACGGCTAGGAATATTCTTATCTTCCAAGGACATATCAAACAGGTTCTCTCGGTGGATTTCTCTCCTAATGGTTATCATTTGGCATCTGGTGGTGAAGATAATCAATGCCGTATTTGGGATCTACGGATGAGAAAGTTGTTGTATATTATACCAGCTCATGTGAACCTCGTTTCTCAAGTAAAGTACGAACCACAAGAACGCTATTTCCTGGCTACTGCCTCACACGACATGAACGTTAATATATGGTCAGGTAGAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTCAAAAGTCGCATCTCTTGATATCGCTGTAGATAGCTCGTCTCGCAAGTGTTTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

276

Amino Acids

31.1

Weight (kDa)

8.83

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIF3I	PF24805	61 - 148	2.7e-06	EIF3I
Beta-prop_WDR5	PF25175	63 - 145	1.3e-10	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	66 - 149	2.1e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	70 - 137	1.5e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	71 - 137	2.9e-09	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	145 - 208	5.4e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	146 - 260	4.4e-23	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	146 - 267	2.8e-14	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	146 - 270	5.4e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	146 - 226	1.2e-12	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	147 - 269	3.6e-14	G protein beta WD-40 repeat protein
EIF3I	PF24805	147 - 238	2.2e-06	EIF3I
WD40_Prp19	PF24814	148 - 270	3.7e-24	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	148 - 268	7.7e-22	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	154 - 263	7.4e-16	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	154 - 246	2.9e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EIPR1	PF23609	155 - 242	1.6e-07	EIPR1 beta-propeller
WD40_MABP1-WDR62_1st	PF24780	157 - 270	1.6e-08	MABP1/WDR62 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	163 - 263	5.4e-08	TEP-1 second beta-propeller
WDR55	PF24796	163 - 265	6.6e-07	WDR55
WD40	PF00400	165 - 200	3.9e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	166 - 245	3.9e-10	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	175 - 268	1.9e-09	MABP1/WDR62 second WD40 domain
Beta-prop_THOC3	PF25174	209 - 269	9.1e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	274
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	95, 480, 606
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	2 cut(s)	481, 665
AfiI	CCNNNNNNNGG	2 cut(s)	200, 595
AflIII	ACRYGT	2 cut(s)	239, 322
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	687
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	6 cut(s)	16, 62, 437, 635, 756, 807
AluI	AGCT	6 cut(s)	16, 62, 437, 635, 756, 807
Alw26I	GTCTC	2 cut(s)	119, 816
AlwI	GGATC	3 cut(s)	95, 480, 606
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	215, 404
BceAI	ACGGC	2 cut(s)	498, 573
BcgI	CGANNNNNNTGC	1 cut(s)	805
BciT130I	CCWGG	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	119, 816
BfaI	CTAG	4 cut(s)	27, 171, 365, 486
BfmI	CTRYAG	1 cut(s)	798
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	3 cut(s)	6, 258, 276
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	2 cut(s)	572, 791
BoxI	GACNNNNGTC	1 cut(s)	769
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpuEI	CTTGAG	2 cut(s)	264, 639
BsaJI	CCNNGG	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 595
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	4 cut(s)	190, 358, 415, 612
BseLI	CCNNNNNNNGG	2 cut(s)	200, 595
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	274
BsiWI	CGTACG	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	200, 595
BsmAI	GTCTC	2 cut(s)	119, 816
BsmBI	CGTCTC	1 cut(s)	816
Bsp143I	GATC	5 cut(s)	100, 187, 382, 472, 598
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	6, 258, 276
BspPI	GGATC	3 cut(s)	95, 480, 606
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	5 cut(s)	100, 187, 382, 472, 598
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	505
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	5 cut(s)	17, 68, 123, 248, 757
BstF5I	GGATG	4 cut(s)	190, 358, 415, 612
BstKTI	GATC	5 cut(s)	103, 190, 385, 475, 601
BstMAI	GTCTC	2 cut(s)	119, 816
BstMBI	GATC	5 cut(s)	100, 187, 382, 472, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	2 cut(s)	243, 326
BstPAI	GACNNNNGTC	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	472, 598
BstYI	RGATCY	2 cut(s)	472, 598
BtsCI	GGATG	4 cut(s)	190, 358, 415, 612
Cac8I	GCNNGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	480, 664
CviAII	CATG	7 cut(s)	157, 240, 323, 638, 709, 767, 828
CviQI	GTAC	2 cut(s)	480, 664
DdeI	CTNAG	5 cut(s)	17, 68, 123, 248, 757
DpnI	GATC	5 cut(s)	102, 189, 384, 474, 600
DpnII	GATC	5 cut(s)	100, 187, 382, 472, 598
DraI	TTTAAA	2 cut(s)	141, 433
Eco130I	CCWWGG	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	7 cut(s)	160, 243, 326, 641, 712, 770, 831
FatI	CATG	7 cut(s)	156, 239, 322, 637, 708, 766, 827
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	4 cut(s)	197, 365, 422, 619
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	4 cut(s)	27, 171, 365, 486
GluI	GCNGC	1 cut(s)	63
Hin1II	CATG	7 cut(s)	160, 243, 326, 641, 712, 770, 831
HindIII	AAGCTT	2 cut(s)	435, 754
HinfI	GANTC	3 cut(s)	73, 452, 770
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188III	TCNNGA	4 cut(s)	104, 216, 304, 788
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	5 cut(s)	17, 68, 123, 248, 757
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	7 cut(s)	160, 243, 326, 641, 712, 770, 831
Kzo9I	GATC	5 cut(s)	100, 187, 382, 472, 598
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	117, 186, 506, 552, 645, 674, 701, 714
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	572, 791
MaeI	CTAG	4 cut(s)	27, 171, 365, 486
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	3 cut(s)	235, 283, 325
MalI	GATC	5 cut(s)	102, 189, 384, 474, 600
MboI	GATC	5 cut(s)	100, 187, 382, 472, 598
MboII	GAAGA	5 cut(s)	122, 432, 467, 493, 587
MflI	RGATCY	2 cut(s)	472, 598
MluCI	AATT	4 cut(s)	36, 131, 176, 263
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	16, 204, 265, 288, 656, 709
MseI	TTAA	4 cut(s)	140, 432, 717, 750
MspR9I	CCNGG	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	813
NdeII	GATC	5 cut(s)	100, 187, 382, 472, 598
NlaIII	CATG	7 cut(s)	160, 243, 326, 641, 712, 770, 831
NlaIV	GGNNCC	3 cut(s)	6, 258, 276
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	2 cut(s)	243, 326
PciI	ACATGT	2 cut(s)	239, 322
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	73, 452
Pfl23II	CGTACG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
PscI	ACATGT	2 cut(s)	239, 322
PshAI	GACNNNNGTC	1 cut(s)	769
PsiI	TTATAA	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspLI	CGTACG	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	6, 258, 276
PspPI	GGNCC	1 cut(s)	5
PsuI	RGATCY	2 cut(s)	472, 598
RsaI	GTAC	2 cut(s)	481, 665
RsaNI	GTAC	2 cut(s)	480, 664
SaqAI	TTAA	4 cut(s)	140, 432, 717, 750
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	5 cut(s)	100, 187, 382, 472, 598
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	1 cut(s)	689
SfaNI	GCATC	2 cut(s)	572, 791
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	279, 654
SmoI	CTYRAG	2 cut(s)	279, 654
Sse9I	AATT	4 cut(s)	36, 131, 176, 263
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	4 cut(s)	27, 171, 365, 486
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	505
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	36, 131, 176, 263
TfiI	GAWTC	2 cut(s)	73, 452
Tru1I	TTAA	4 cut(s)	140, 432, 717, 750
Tru9I	TTAA	4 cut(s)	140, 432, 717, 750
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	123, 372, 725
TspGWI	ACGGA	2 cut(s)	422, 619
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	2 cut(s)	243, 326
XspI	CTAG	4 cut(s)	27, 171, 365, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.