Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Reverse (-)

20230697 .. 20234813

Gene Structure 4117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGACGATGGAGGAGGAGGAGGAGAAGCTTCTCTCCTCTATAGCAGCTTCCGAGCCCCCCCAAAACGGCGAAGCAGCAGCCAGGATGACCGACTCCGCTTCCGATGACGACACCGCCGCCGCCGCTGCTCAAGGAGCCTCCTCCGCCGGAGTCGAATACCAGATATCCGAAGAGCAAAAAGCGGCGCGAGAGCGACAGGAGAGAGCAATGCAGCAGCTCTTGATGAAGCGCCGCGCTTCCGCCCTCGCCGTCCCCACCAACGACAACGCCGTCCGGACTCGTCTCCGGCGCCTCGGCGAGCCCATGACTCTGTTCGGAGAGCGAGAGATGGAAAGGCGGGACCGGCTCAGGTCGATTCTGGCCAAGCTCGATTCGGCGCAGCTGGAGACGCTGATGAAGGCTCACGACGAGGACGAGGCTTCTGCTGCTGGTGCTCAAGGCCCCGACGATTCTGACTTCGATCAAGAAATTCAGTACCCCTTCTTCACTGAAGCGACCAGGCCCAGAGCTTTGCGTGACGCTAGGGTTCATATTGCGCAGTACTCGCTTTCCAGGGCGGCGTTGCGGCTTCAACGTGCGAGGAGGAAGGAGGAGGATCCGGATGAGGATATGGATGCCGAGATCAACTGGGCTTTAGAGCAGGCCTCCAATTTGAAGCTTGATTGCAGTGAGATTGGCGATGATAGGCCACTTTCTGGTTGCTCATTCTCACAAGATGGCAAATTGCTTGCCGCCTGCGCTTTAAGTCCAGTTGCCAAGCTGTGGAGCATGCCTCAAGTAACAAAGGTTGCCACGTTGAAGGGACATACAGAGCGCTTAACTGATGTTGCATTTTCTCCTGTGCAAAACCATCTCTTGGCAACTGCGTCTGCGGATAGGACTGCGAGGTTGTGGAACAGCGAAGGAGCACACCTGATGACATTCGGGGGACATTTGGACCGTCTTGCCCGCATTGCCTTCCATCCCTCAGGAAAGTACTTGGGTACAACTAGCTTTGACAAGACTTGGAGGCTATGGGATGTAGAGACTGGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTCTATGCTATAGACTTCCACCCAGATGGCTCATTGGTTGCAACTGCTGGATTGGATGCGCTTGCTCGTGTTTGGGACCTCCGTAGTGGTAGAAGTATTCTTACCTTGGAAGGCCATGTCAAAAAAGTAAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

402

Amino Acids

44.4

Weight (kDa)

5.31

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	91 - 118	3.6e-11	pre-mRNA processing factor 4 (PRP4) like
Beta-prop_WDR3_2nd	PF25172	219 - 343	1.4e-11	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	226 - 348	5.9e-11	G protein beta WD-40 repeat protein
EIF3I	PF24805	226 - 304	2.6e-07	EIF3I
Beta-prop_WDR5	PF25175	228 - 393	1.8e-38	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	229 - 347	1.5e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	229 - 305	3.6e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	232 - 330	6.4e-11	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	234 - 301	1.9e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	235 - 345	1.5e-19	THOC3 beta-propeller domain
WD40_Prp19	PF24814	242 - 400	4.7e-35	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	243 - 399	7.7e-26	WDR3 first beta-propeller domain
WD40	PF00400	262 - 299	5.1e-08	WD domain, G-beta repeat
WDR55	PF24796	271 - 395	6.2e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	282 - 383	1.3e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	284 - 375	3.6e-06	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	285 - 346	1.3e-06	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	304 - 400	1.3e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	304 - 340	6.2e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	307 - 389	7.8e-07	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	308 - 394	1.4e-09	EIF3I
Beta-prop_THOC3	PF25174	314 - 399	1.2e-15	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	317 - 394	4.1e-08	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	329 - 397	8.5e-08	G protein beta WD-40 repeat protein
WD40	PF00400	350 - 382	4.2e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
Acc16I	TGCGCA	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	288
AccB7I	CCANNNNNTGG	3 cut(s)	695, 762, 856
AccII	CGCG	2 cut(s)	187, 234
AccIII	TCCGGA	2 cut(s)	273, 598
AclWI	GGATC	2 cut(s)	590, 603
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	289
AfaI	GTAC	4 cut(s)	476, 542, 977, 985
AfeI	AGCGCT	1 cut(s)	815
AfiI	CCNNNNNNNGG	4 cut(s)	65, 695, 762, 856
AgsI	TTSAA	4 cut(s)	572, 655, 799, 1049
AjnI	CCWGG	3 cut(s)	80, 497, 551
AluBI	AGCT	9 cut(s)	28, 47, 217, 367, 382, 509, 658, 760, 993
AluI	AGCT	9 cut(s)	28, 47, 217, 367, 382, 509, 658, 760, 993
Alw21I	GWGCWC	2 cut(s)	436, 910
Alw26I	GTCTC	3 cut(s)	287, 380, 1019
AlwI	GGATC	2 cut(s)	590, 603
Aor13HI	TCCGGA	2 cut(s)	273, 598
Aor51HI	AGCGCT	1 cut(s)	815
AoxI	GGCC	6 cut(s)	360, 439, 500, 642, 686, 1180
ApeKI	GCWGC	8 cut(s)	44, 74, 77, 125, 211, 214, 379, 425
ApoI	RAATTY	1 cut(s)	468
AspLEI	GCGC	9 cut(s)	187, 231, 236, 291, 379, 538, 740, 816, 1129
AspS9I	GGNCC	5 cut(s)	340, 440, 501, 937, 1144
AsuHPI	GGTGA	1 cut(s)	1043
AvaII	GGWCC	3 cut(s)	340, 937, 1144
AxyI	CCTNAGG	1 cut(s)	967
BalI	TGGCCA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	57, 303
BarI	GAAGNNNNNNTAC	4 cut(s)	467, 499, 1153, 1185
BauI	CACGAG	1 cut(s)	1134
Bbv12I	GWGCWC	2 cut(s)	436, 910
BbvI	GCAGC	8 cut(s)	56, 86, 89, 112, 223, 226, 391, 412
BccI	CCATC	5 cut(s)	322, 710, 858, 969, 1088
BceAI	ACGGC	3 cut(s)	82, 233, 254
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	3 cut(s)	82, 499, 553
BcoDI	GTCTC	3 cut(s)	287, 380, 1019
BfaI	CTAG	2 cut(s)	522, 990
BfmI	CTRYAG	2 cut(s)	39, 1077
BfoI	RGCGCY	3 cut(s)	232, 292, 817
BmcAI	AGTACT	2 cut(s)	542, 977
Bme1390I	CCNGG	3 cut(s)	82, 499, 553
Bme18I	GGWCC	3 cut(s)	340, 937, 1144
BmgT120I	GGNCC	5 cut(s)	340, 440, 501, 937, 1144
BmiI	GGNNCC	6 cut(s)	136, 290, 341, 442, 597, 1145
BmrFI	CCNGG	3 cut(s)	82, 499, 553
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	604, 1114
BmuI	ACTGGG	1 cut(s)	637
BplI	GAGNNNNNCTC	4 cut(s)	629, 661, 757, 789
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	3 cut(s)	114, 420, 759
BsaHI	GRCGYC	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	292, 552, 1173
BsaWI	WCCGGW	2 cut(s)	273, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 695, 762, 856
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	632, 749, 1033
Bse21I	CCTNAGG	1 cut(s)	967
Bse3DI	GCAATG	2 cut(s)	213, 951
BseAI	TCCGGA	2 cut(s)	273, 598
BseBI	CCWGG	3 cut(s)	82, 499, 553
BseDI	CCNNGG	3 cut(s)	292, 552, 1173
BseGI	GGATG	6 cut(s)	90, 607, 619, 961, 1024, 1129
BseLI	CCNNNNNNNGG	4 cut(s)	65, 695, 762, 856
BseMI	GCAATG	2 cut(s)	213, 951
BseMII	CTCAG	2 cut(s)	361, 981
BseNI	ACTGG	3 cut(s)	632, 749, 1033
BseRI	GAGGAG	8 cut(s)	25, 26, 29, 32, 35, 130, 595, 605
BseXI	GCAGC	8 cut(s)	56, 86, 89, 112, 223, 226, 391, 412
Bsh1236I	CGCG	2 cut(s)	187, 234
BshFI	GGCC	6 cut(s)	362, 441, 502, 644, 688, 1182
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	436, 910
BsiSI	CCGG	5 cut(s)	147, 274, 286, 343, 599
BslFI	GGGAC	5 cut(s)	236, 353, 816, 942, 1157
BslI	CCNNNNNNNGG	4 cut(s)	65, 695, 762, 856
BsmAI	GTCTC	3 cut(s)	287, 380, 1019
BsmBI	CGTCTC	2 cut(s)	287, 380
BsmFI	GGGAC	5 cut(s)	236, 353, 816, 942, 1157
BsnI	GGCC	6 cut(s)	362, 441, 502, 644, 688, 1182
Bsp1286I	GDGCHC	4 cut(s)	57, 303, 436, 910
Bsp13I	TCCGGA	2 cut(s)	273, 598
Bsp143I	GATC	3 cut(s)	460, 595, 621
BspANI	GGCC	6 cut(s)	362, 441, 502, 644, 688, 1182
BspCNI	CTCAG	2 cut(s)	360, 980
BspEI	TCCGGA	2 cut(s)	273, 598
BspFNI	CGCG	2 cut(s)	187, 234
BspLI	GGNNCC	6 cut(s)	136, 290, 341, 442, 597, 1145
BspPI	GGATC	2 cut(s)	590, 603
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	213, 951
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	632, 749, 1033
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	292, 552, 1173
BssMI	GATC	3 cut(s)	460, 595, 621
BssNI	GRCGYC	1 cut(s)	289
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	1 cut(s)	1173
Bst2BI	CACGAG	1 cut(s)	1134
Bst2UI	CCWGG	3 cut(s)	82, 499, 553
Bst4CI	ACNGT	2 cut(s)	941, 1061
Bst6I	CTCTTC	2 cut(s)	165, 1029
BstACI	GRCGYC	1 cut(s)	289
BstC8I	GCNNGC	7 cut(s)	299, 642, 729, 736, 770, 949, 1131
BstDEI	CTNAG	2 cut(s)	347, 967
BstF5I	GGATG	6 cut(s)	90, 607, 619, 961, 1024, 1129
BstFNI	CGCG	2 cut(s)	187, 234
BstH2I	RGCGCY	3 cut(s)	232, 292, 817
BstHHI	GCGC	9 cut(s)	187, 231, 236, 291, 379, 538, 740, 816, 1129
BstKTI	GATC	3 cut(s)	463, 598, 624
BstMAI	GTCTC	3 cut(s)	287, 380, 1019
BstMBI	GATC	3 cut(s)	460, 595, 621
BstNI	CCWGG	3 cut(s)	82, 499, 553
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	3 cut(s)	80, 497, 551
BstSFI	CTRYAG	2 cut(s)	39, 1077
BstUI	CGCG	2 cut(s)	187, 234
BstV1I	GCAGC	8 cut(s)	56, 86, 89, 112, 223, 226, 391, 412
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	967
BsuRI	GGCC	6 cut(s)	362, 441, 502, 644, 688, 1182
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	6 cut(s)	90, 607, 619, 961, 1024, 1129
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	486, 673
Cac8I	GCNNGC	7 cut(s)	299, 642, 729, 736, 770, 949, 1131
CfoI	GCGC	9 cut(s)	187, 231, 236, 291, 379, 538, 740, 816, 1129
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	5 cut(s)	340, 440, 501, 937, 1144
CseI	GACGC	3 cut(s)	397, 527, 855
Csp6I	GTAC	4 cut(s)	475, 541, 976, 984
CviAII	CATG	3 cut(s)	304, 769, 1184
CviQI	GTAC	4 cut(s)	475, 541, 976, 984
DdeI	CTNAG	2 cut(s)	347, 967
DinI	GGCGCC	1 cut(s)	290
DpnI	GATC	3 cut(s)	462, 597, 623
DpnII	GATC	3 cut(s)	460, 595, 621
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	165, 1029
EarI	CTCTTC	2 cut(s)	165, 1029
EciI	GGCGGA	2 cut(s)	133, 229
Eco130I	CCWWGG	1 cut(s)	1173
Eco147I	AGGCCT	1 cut(s)	644
Eco24I	GRGCYC	2 cut(s)	57, 303
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	340, 937, 1144
Eco47III	AGCGCT	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	967
EcoO109I	RGGNCCY	2 cut(s)	440, 1144
EcoRII	CCWGG	3 cut(s)	80, 497, 551
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	1173
EcoT38I	GRGCYC	2 cut(s)	57, 303
EgeI	GGCGCC	1 cut(s)	290
EheI	GGCGCC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	1173
Esp3I	CGTCTC	2 cut(s)	287, 380
FaeI	CATG	3 cut(s)	307, 772, 1187
FalI	AAGNNNNNCTT	2 cut(s)	1026, 1058
FaqI	GGGAC	5 cut(s)	236, 353, 816, 942, 1157
FatI	CATG	3 cut(s)	303, 768, 1183
FauI	CCCGC	2 cut(s)	330, 956
FokI	GGATG	6 cut(s)	97, 614, 626, 948, 1031, 1136
FriOI	GRGCYC	2 cut(s)	57, 303
FspBI	CTAG	2 cut(s)	522, 990
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	9 cut(s)	186, 230, 235, 290, 378, 537, 739, 815, 1128
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	3 cut(s)	232, 292, 817
HaeIII	GGCC	6 cut(s)	362, 441, 502, 644, 688, 1182
HapII	CCGG	5 cut(s)	147, 274, 286, 343, 599
HgaI	GACGC	3 cut(s)	397, 527, 855
HhaI	GCGC	9 cut(s)	187, 231, 236, 291, 379, 538, 740, 816, 1129
Hin1I	GRCGYC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	307, 772, 1187
Hin6I	GCGC	9 cut(s)	185, 229, 234, 289, 377, 536, 738, 814, 1127
HinP1I	GCGC	9 cut(s)	185, 229, 234, 289, 377, 536, 738, 814, 1127
HindIII	AAGCTT	2 cut(s)	26, 656
HinfI	GANTC	8 cut(s)	92, 150, 277, 307, 355, 371, 449, 1200
HpaII	CCGG	5 cut(s)	147, 274, 286, 343, 599
HphI	GGTGA	1 cut(s)	1043
Hpy188I	TCNGA	5 cut(s)	52, 103, 169, 317, 454
Hpy188III	TCNNGA	7 cut(s)	220, 274, 404, 464, 599, 969, 1049
Hpy99I	CGWCG	2 cut(s)	410, 449
HpyAV	CCTTC	8 cut(s)	391, 490, 580, 793, 896, 967, 1046, 1172
HpyCH4III	ACNGT	2 cut(s)	941, 1061
HpyCH4IV	ACGT	2 cut(s)	574, 794
HpyCH4V	TGCA	5 cut(s)	211, 666, 830, 844, 1109
HpyF3I	CTNAG	2 cut(s)	347, 967
HpySE526I	ACGT	2 cut(s)	574, 794
Hsp92I	GRCGYC	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	307, 772, 1187
HspAI	GCGC	9 cut(s)	185, 229, 234, 289, 377, 536, 738, 814, 1127
KasI	GGCGCC	1 cut(s)	288
Kpn2I	TCCGGA	2 cut(s)	273, 598
Kzo9I	GATC	3 cut(s)	460, 595, 621
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	134, 765, 905
Lsp1109I	GCAGC	8 cut(s)	56, 86, 89, 112, 223, 226, 391, 412
LweI	GCATC	2 cut(s)	604, 1114
MaeI	CTAG	2 cut(s)	522, 990
MaeII	ACGT	2 cut(s)	574, 794
MaeIII	GTNAC	3 cut(s)	515, 778, 1055
MalI	GATC	3 cut(s)	462, 597, 623
MboI	GATC	3 cut(s)	460, 595, 621
MboII	GAAGA	4 cut(s)	182, 475, 1037, 1046
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	4 cut(s)	57, 303, 436, 910
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	3 cut(s)	468, 649, 722
MluNI	TGGCCA	1 cut(s)	362
Mly113I	GGCGCC	1 cut(s)	289
MlyI	GAGTC	5 cut(s)	86, 159, 271, 301, 1194
Mox20I	TGGCCA	1 cut(s)	362
MroI	TCCGGA	2 cut(s)	273, 598
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	2 cut(s)	743, 818
MslI	CAYNNNNRTG	1 cut(s)	1092
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	125, 382
MspI	CCGG	5 cut(s)	147, 274, 286, 343, 599
MspR9I	CCNGG	3 cut(s)	82, 499, 553
MteI	GCGCNGCGC	1 cut(s)	232
MvaI	CCWGG	3 cut(s)	82, 499, 553
MvnI	CGCG	2 cut(s)	187, 234
NarI	GGCGCC	1 cut(s)	289
NdeII	GATC	3 cut(s)	460, 595, 621
NlaIII	CATG	3 cut(s)	307, 772, 1187
NlaIV	GGNNCC	6 cut(s)	136, 290, 341, 442, 597, 1145
NmeAIII	GCCGAG	2 cut(s)	273, 643
NmuCI	GTSAC	2 cut(s)	515, 1055
NsbI	TGCGCA	1 cut(s)	537
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 411
PfeI	GAWTC	3 cut(s)	355, 371, 449
PflMI	CCANNNNNTGG	3 cut(s)	695, 762, 856
PleI	GAGTC	5 cut(s)	86, 158, 271, 301, 1194
PluTI	GGCGCC	1 cut(s)	292
PpsI	GAGTC	5 cut(s)	86, 158, 271, 301, 1194
PpuMI	RGGWCCY	1 cut(s)	1144
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	3 cut(s)	80, 497, 551
PspGI	CCWGG	3 cut(s)	80, 497, 551
PspN4I	GGNNCC	6 cut(s)	136, 290, 341, 442, 597, 1145
PspPI	GGNCC	5 cut(s)	340, 440, 501, 937, 1144
PspPPI	RGGWCCY	1 cut(s)	1144
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	4 cut(s)	476, 542, 977, 985
RsaNI	GTAC	4 cut(s)	475, 541, 976, 984
RseI	CAYNNNNRTG	1 cut(s)	1092
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	743, 818
Sau3AI	GATC	3 cut(s)	460, 595, 621
Sau96I	GGNCC	5 cut(s)	340, 440, 501, 937, 1144
ScaI	AGTACT	2 cut(s)	542, 977
SchI	GAGTC	5 cut(s)	86, 159, 271, 301, 1194
ScrFI	CCNGG	3 cut(s)	82, 499, 553
SduI	GDGCHC	4 cut(s)	57, 303, 436, 910
SfaNI	GCATC	2 cut(s)	604, 1114
SfcI	CTRYAG	2 cut(s)	39, 1077
SfoI	GGCGCC	1 cut(s)	290
SinI	GGWCC	3 cut(s)	340, 937, 1144
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	3 cut(s)	129, 435, 774
SmoI	CTYRAG	3 cut(s)	129, 435, 774
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	3 cut(s)	468, 649, 722
SseBI	AGGCCT	1 cut(s)	644
SspDI	GGCGCC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	522, 990
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	80, 497, 551
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	2 cut(s)	941, 1061
TaiI	ACGT	2 cut(s)	577, 797
TaqI	TCGA	4 cut(s)	153, 353, 369, 459
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	468, 649, 722
TatI	WGTACW	2 cut(s)	540, 975
TauI	GCSGC	8 cut(s)	119, 122, 125, 185, 234, 560, 568, 734
TfiI	GAWTC	3 cut(s)	355, 371, 449
Tru1I	TTAA	2 cut(s)	743, 818
Tru9I	TTAA	2 cut(s)	743, 818
TscAI	CASTG	2 cut(s)	493, 673
TseFI	GTSAC	2 cut(s)	515, 1055
TseI	GCWGC	8 cut(s)	44, 74, 77, 125, 211, 214, 379, 425
Tsp45I	GTSAC	2 cut(s)	515, 1055
TspDTI	ATGAA	3 cut(s)	239, 410, 518
TspGWI	ACGGA	1 cut(s)	1139
TspRI	CASTG	2 cut(s)	493, 673
Van91I	CCANNNNNTGG	3 cut(s)	695, 762, 856
VpaK11BI	GGWCC	3 cut(s)	340, 937, 1144
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	772
XspI	CTAG	2 cut(s)	522, 990
ZrmI	AGTACT	2 cut(s)	542, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.