Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Reverse (-)

17304130 .. 17307426

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGAACCCAACAAGGATGATAATGTTTCATTAGCAGCAACAGCTCAAATTTCAGCACCTCCAGTTCTACAAGATGCCTCGTCTCTGCCAGGTTTCTCTGCCATTCCACCTGTGGTTCCTCCTTCTTTTCCCCCACCAATGGCTCCAATACCTATGATGCCACATCCTCCAGTTGCCCGCCCACCTACTTTTAGGCCACCTGTTTCACAAAATGGTGGAGTGAAAACCAGTGACTCGGATTCGGAATCAGATGATGAACATATTGAGATATCTGAAGAGAGTAAGCAGGTCAGAGAAAGACAGGAAAAGGCATTGCAAGATTTGTTGGTAAAGCGTCGTGCTGCTGCTATGGCAGTTCCAACAAATGACAAAGCTGTTAGGGACCGACTTAGACGACTTGGGGAGCCCATTACTCTATTTGGAGAACAGGAAATGGAGAGACGAGCTAGGCTGACTCAGCTGTTGACTAGGTATGATATCAATGGGCAATTGGATAAACTGGTTAAAGATCACGAAGAAGATGTGACTCCAAAAGAGGAAGTAGATGATGAAGTTCTTGAATACCCCTTTTTTACCGAGGGTCCAAAGGAACTTAGAGAGGCTAGAATAGAAATTGCCAAGTTTTCTGTCAAGAGAGCTGCTGTCAGGATTCAGCGTGCAAAGCGGCGGAGGGATGATCCAGATGAAGATATGGATGCAGAGACTAAGTGGGCTTTAAAGCATGCTAAACACATGGCCCTTGATTGCAGTAATTTTGGAGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCACATGTTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGCTGTCTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGGATGATTGTCTAGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACTCCTACAAACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGGGAAATACCTGGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAGGAGCAGAACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAACAAGATGGAGCATTAGCAGCTTCTTGTGGGCTTGATTCACTCGCACGAGTTTGGGATCTCCGCACTGGTAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTTTTCTCCGTGAATTTCTCTCCTAATGGTTATCACTTGGCATCTGGTGGGGAGGATAATCAATGCCGTATTTGGGATCTAAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCTAACCTTGTGTCTCAAGTGAAGTATGAGCCACAAGAAGGCTACTTTCTGGCCACTGCCTCATACGACATGAAAGTCAATATATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTCAAAAGTCGCCTCTCTAGATATCACAGCAGATAGCTCGTGTATCGCTACTGTATCACATGATCGCACCATCAAGCTATGGACAAGCAGTGGAAATGATGATGAAGACGAAGAGAAAGAAACAATGGACATAGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

554

Amino Acids

61.84

Weight (kDa)

5.45

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	126 - 154	4.8e-11	pre-mRNA processing factor 4 (PRP4) like
WD40_CDC20-Fz	PF24807	247 - 535	7.4e-32	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	250 - 367	3.4e-11	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	255 - 415	6.1e-36	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	255 - 373	2.9e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	257 - 326	2.5e-07	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	258 - 375	4.8e-10	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	258 - 374	1.6e-17	THOC3 beta-propeller domain
WD40_Prp19	PF24814	289 - 529	4.2e-55	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	289 - 414	9.1e-21	WDR3 first beta-propeller domain
EIF3I	PF24805	293 - 374	1.3e-07	EIF3I
WDR55	PF24796	298 - 382	9.7e-06	WDR55
WD40_MABP1-WDR62_2nd	PF24782	298 - 410	1.2e-09	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	300 - 374	1.6e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	310 - 409	2.4e-12	WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	311 - 400	6.1e-06	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	329 - 394	5.4e-09	THOC3 beta-propeller domain
WD40	PF00400	329 - 367	1.5e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	334 - 429	2.4e-07	TEP-1 second beta-propeller
Beta-prop_EML	PF23409	335 - 540	5.5e-10	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	356 - 535	1.6e-27	G protein beta WD-40 repeat protein
WDR55	PF24796	375 - 484	1.3e-09	WDR55
EIF3I	PF24805	376 - 461	4.7e-11	EIF3I
Beta-prop_THOC3	PF25174	378 - 477	6.4e-19	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	378 - 440	2.5e-06	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	378 - 409	5e-06	WD domain, G-beta repeat
Beta-prop_IFT122_1st	PF23381	382 - 539	4.5e-06	IFT122 first beta-propeller
WD40_WDHD1_1st	PF24817	383 - 461	2.8e-11	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	384 - 552	7.2e-21	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	384 - 538	4.1e-22	WDR3 second beta-propeller domain
Beta-prop_EIPR1	PF23609	394 - 493	6.6e-07	EIPR1 beta-propeller
Beta-prop_WDR3_1st	PF25173	406 - 536	2.7e-25	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	406 - 536	1.6e-06	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	411 - 475	2.6e-12	WDR5 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	414 - 537	5.8e-10	MABP1/WDR62 first WD40 domain
WD40	PF00400	414 - 451	8.6e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	417 - 493	6.9e-10	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	418 - 540	2.1e-11	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	426 - 534	8e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	438 - 536	9.5e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	458 - 537	5.1e-11	THOC3 beta-propeller domain
EIF3I	PF24805	463 - 537	9.1e-08	EIF3I
Beta-prop_WDR5	PF25175	464 - 538	3.4e-14	WDR5 beta-propeller domain
WD40_Prp19	PF24814	469 - 540	1.7e-07	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	476 - 539	5.6e-08	WDHD1 first WD40 domain
WD40	PF00400	499 - 535	9.6e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1466
Acc36I	ACCTGC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	1152
AccII	CGCG	1 cut(s)	795
AciI	CCGC	5 cut(s)	178, 664, 667, 1144, 1231
AclI	AACGTT	1 cut(s)	1001
AclWI	GGATC	5 cut(s)	671, 894, 1026, 1233, 1359
AcoI	YGGCCR	1 cut(s)	1443
AcsI	RAATTY	2 cut(s)	48, 1288
AcuI	CTGAAG	1 cut(s)	294
AcvI	CACGTG	1 cut(s)	1031
AfaI	GTAC	1 cut(s)	1376
AfiI	CCNNNNNNNGG	4 cut(s)	139, 776, 1348, 1430
AflIII	ACRYGT	2 cut(s)	815, 1030
AgeI	ACCGGT	1 cut(s)	1273
AgsI	TTSAA	4 cut(s)	560, 883, 1007, 1169
AjiI	CACGTC	1 cut(s)	1086
AjnI	CCWGG	2 cut(s)	88, 1059
Alw26I	GTCTC	4 cut(s)	87, 433, 695, 1410
AlwI	GGATC	5 cut(s)	671, 894, 1026, 1233, 1359
AoxI	GGCC	4 cut(s)	194, 735, 1135, 1443
ApeKI	GCWGC	6 cut(s)	35, 341, 344, 638, 780, 1187
ApoI	RAATTY	2 cut(s)	48, 1288
AsiGI	ACCGGT	1 cut(s)	1273
AspS9I	GGNCC	3 cut(s)	382, 581, 736
AvaII	GGWCC	2 cut(s)	382, 581
BalI	TGGCCA	1 cut(s)	1445
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	2 cut(s)	1215, 1561
BbrPI	CACGTG	1 cut(s)	1031
BbsI	GAAGAC	2 cut(s)	1246, 1635
BbvI	GCAGC	6 cut(s)	47, 328, 331, 625, 767, 1199
BccI	CCATC	5 cut(s)	791, 977, 1054, 1169, 1601
BceAI	ACGGC	1 cut(s)	1326
BcgI	CGANNNNNNTGC	2 cut(s)	1542, 1576
BciT130I	CCWGG	2 cut(s)	90, 1061
BcoDI	GTCTC	4 cut(s)	87, 433, 695, 1410
BfaI	CTAG	6 cut(s)	447, 468, 603, 938, 1541, 1663
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	1657
BisI	GCNGC	8 cut(s)	36, 342, 345, 639, 665, 781, 1144, 1188
BlpI	GCTNAGC	1 cut(s)	1510
BlsI	GCNGC	8 cut(s)	37, 343, 346, 640, 666, 782, 1145, 1189
Bme1390I	CCNGG	2 cut(s)	90, 1061
Bme18I	GGWCC	2 cut(s)	382, 581
BmgBI	CACGTC	1 cut(s)	1086
BmgT120I	GGNCC	3 cut(s)	382, 581, 736
BmiI	GGNNCC	6 cut(s)	6, 117, 144, 383, 405, 582
BmrFI	CCNGG	2 cut(s)	90, 1061
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	5 cut(s)	64, 147, 685, 840, 1325
BmuI	ACTGGG	1 cut(s)	917
BpiI	GAAGAC	2 cut(s)	1246, 1635
BpmI	CTGGAG	2 cut(s)	45, 153
Bpu1102I	GCTNAGC	1 cut(s)	1510
BpuEI	CTTGAG	2 cut(s)	840, 1392
BsaAI	YACGTR	1 cut(s)	1031
BsaJI	CCNNGG	3 cut(s)	576, 1060, 1258
BsaWI	WCCGGW	1 cut(s)	1273
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 776, 1348, 1430
Bse118I	RCCGGY	2 cut(s)	776, 1273
Bse1I	ACTGG	6 cut(s)	62, 170, 228, 504, 923, 1240
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	90, 1061
BseDI	CCNNGG	3 cut(s)	576, 1060, 1258
BseGI	GGATG	5 cut(s)	22, 163, 679, 700, 934
BseLI	CCNNNNNNNGG	4 cut(s)	139, 776, 1348, 1430
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	470, 815
BseNI	ACTGG	6 cut(s)	62, 170, 228, 504, 923, 1240
BseXI	GCAGC	6 cut(s)	47, 328, 331, 625, 767, 1199
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	4 cut(s)	196, 737, 1137, 1445
BshTI	ACCGGT	1 cut(s)	1273
BsiSI	CCGG	2 cut(s)	777, 1274
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	4 cut(s)	139, 776, 1348, 1430
BsmAI	GTCTC	4 cut(s)	87, 433, 695, 1410
BsmBI	CGTCTC	2 cut(s)	87, 433
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	4 cut(s)	196, 737, 1137, 1445
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	1374
Bsp1720I	GCTNAGC	1 cut(s)	1510
BspACI	CCGC	5 cut(s)	178, 664, 667, 1144, 1231
BspANI	GGCC	4 cut(s)	196, 737, 1137, 1445
BspCNI	CTCAG	2 cut(s)	469, 816
BspFNI	CGCG	1 cut(s)	795
BspLI	GGNNCC	6 cut(s)	6, 117, 144, 383, 405, 582
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	5 cut(s)	671, 894, 1026, 1233, 1359
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	776, 1273
BsrGI	TGTACA	1 cut(s)	1374
BsrI	ACTGG	6 cut(s)	62, 170, 228, 504, 923, 1240
BssAI	RCCGGY	2 cut(s)	776, 1273
BssECI	CCNNGG	3 cut(s)	576, 1060, 1258
BssSI	CACGAG	2 cut(s)	1215, 1561
BssT1I	CCWWGG	1 cut(s)	1258
Bst2BI	CACGAG	2 cut(s)	1215, 1561
Bst2UI	CCWGG	2 cut(s)	90, 1061
Bst4CI	ACNGT	1 cut(s)	1576
Bst6I	CTCTTC	3 cut(s)	270, 1480, 1629
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	1374
BstBAI	YACGTR	1 cut(s)	1031
BstC8I	GCNNGC	3 cut(s)	178, 657, 723
BstDEI	CTNAG	7 cut(s)	389, 456, 593, 705, 824, 1355, 1510
BstF5I	GGATG	5 cut(s)	22, 163, 679, 700, 934
BstFNI	CGCG	1 cut(s)	795
BstMAI	GTCTC	4 cut(s)	87, 433, 695, 1410
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 350, 457, 661, 1034, 1143, 1187
BstNI	CCWGG	2 cut(s)	90, 1061
BstNSI	RCATGY	2 cut(s)	725, 819
BstSCI	CCNGG	2 cut(s)	88, 1059
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	6 cut(s)	47, 328, 331, 625, 767, 1199
BstV2I	GAAGAC	2 cut(s)	1246, 1635
BstX2I	RGATCY	3 cut(s)	1225, 1351, 1657
BstYI	RGATCY	3 cut(s)	1225, 1351, 1657
BsuRI	GGCC	4 cut(s)	196, 737, 1137, 1445
BtgZI	GCGATG	1 cut(s)	810
BtrI	CACGTC	1 cut(s)	1086
BtsCI	GGATG	5 cut(s)	22, 163, 679, 700, 934
BtsI	GCAGTG	3 cut(s)	1153, 1446, 1618
BtsIMutI	CAGTG	6 cut(s)	235, 930, 1153, 1233, 1446, 1618
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	178, 657, 723
Cfr10I	RCCGGY	2 cut(s)	776, 1273
Cfr13I	GGNCC	3 cut(s)	382, 581, 736
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	1375
CspAI	ACCGGT	1 cut(s)	1273
CviAII	CATG	7 cut(s)	722, 733, 816, 1391, 1462, 1520, 1583
CviQI	GTAC	1 cut(s)	1375
DdeI	CTNAG	7 cut(s)	389, 456, 593, 705, 824, 1355, 1510
DraI	TTTAAA	1 cut(s)	717
DrdI	GACNNNNNNGTC	1 cut(s)	1466
DseDI	GACNNNNNNGTC	1 cut(s)	1466
EaeI	YGGCCR	1 cut(s)	1443
Eam1104I	CTCTTC	3 cut(s)	270, 1480, 1629
EarI	CTCTTC	3 cut(s)	270, 1480, 1629
EciI	GGCGGA	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	1258
Eco24I	GRGCYC	1 cut(s)	408
Eco32I	GATATC	3 cut(s)	270, 478, 1546
Eco47I	GGWCC	2 cut(s)	382, 581
Eco57I	CTGAAG	1 cut(s)	294
Eco72I	CACGTG	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	88, 1059
EcoRV	GATATC	3 cut(s)	270, 478, 1546
EcoT14I	CCWWGG	1 cut(s)	1258
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	1258
Esp3I	CGTCTC	2 cut(s)	87, 433
FaeI	CATG	7 cut(s)	725, 736, 819, 1394, 1465, 1523, 1586
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	7 cut(s)	721, 732, 815, 1390, 1461, 1519, 1582
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	1152
Fnu4HI	GCNGC	8 cut(s)	36, 342, 345, 639, 665, 781, 1144, 1188
FokI	GGATG	5 cut(s)	29, 150, 686, 707, 941
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	8 cut(s)	36, 342, 345, 639, 665, 781, 1144, 1188
FspBI	CTAG	6 cut(s)	447, 468, 603, 938, 1541, 1663
GluI	GCNGC	8 cut(s)	36, 342, 345, 639, 665, 781, 1144, 1188
GsuI	CTGGAG	2 cut(s)	45, 153
HaeIII	GGCC	4 cut(s)	196, 737, 1137, 1445
HapII	CCGG	2 cut(s)	777, 1274
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	7 cut(s)	725, 736, 819, 1394, 1465, 1523, 1586
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HindIII	AAGCTT	1 cut(s)	1507
HinfI	GANTC	8 cut(s)	233, 239, 245, 454, 526, 649, 1205, 1523
HpaII	CCGG	2 cut(s)	777, 1274
Hpy166II	GTNNAC	2 cut(s)	465, 1153
Hpy188I	TCNGA	6 cut(s)	238, 244, 250, 274, 293, 825
Hpy188III	TCNNGA	8 cut(s)	512, 557, 631, 646, 680, 880, 1482, 1541
Hpy8I	GTNNAC	2 cut(s)	465, 1153
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	6 cut(s)	132, 796, 877, 1001, 1127, 1424
HpyCH4III	ACNGT	1 cut(s)	1576
HpyCH4IV	ACGT	4 cut(s)	898, 1001, 1030, 1085
HpyCH4V	TGCA	8 cut(s)	316, 659, 698, 747, 902, 965, 1129, 1163
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 350, 457, 661, 1034, 1143, 1187
HpyF3I	CTNAG	7 cut(s)	389, 456, 593, 705, 824, 1355, 1510
HpySE526I	ACGT	4 cut(s)	898, 1001, 1030, 1085
Hsp92II	CATG	7 cut(s)	725, 736, 819, 1394, 1465, 1523, 1586
LmnI	GCTCC	5 cut(s)	148, 403, 788, 1112, 1178
Lsp1109I	GCAGC	6 cut(s)	47, 328, 331, 625, 767, 1199
LweI	GCATC	5 cut(s)	64, 147, 685, 840, 1325
MaeI	CTAG	6 cut(s)	447, 468, 603, 938, 1541, 1663
MaeII	ACGT	4 cut(s)	898, 1001, 1030, 1085
MaeIII	GTNAC	4 cut(s)	230, 523, 832, 859
MboII	GAAGA	8 cut(s)	287, 527, 530, 698, 1246, 1497, 1640, 1646
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	3 cut(s)	1225, 1351, 1657
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	1445
MluCI	AATT	7 cut(s)	48, 488, 612, 751, 839, 1158, 1288
MluNI	TGGCCA	1 cut(s)	1445
MlyI	GAGTC	4 cut(s)	227, 448, 520, 1532
MmeI	TCCRAC	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	1445
MscI	TGGCCA	1 cut(s)	1445
MseI	TTAA	3 cut(s)	504, 716, 1503
Msp20I	TGGCCA	1 cut(s)	1445
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	2 cut(s)	777, 1274
MspR9I	CCNGG	2 cut(s)	90, 1061
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	90, 1061
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	7 cut(s)	41, 350, 457, 661, 1034, 1143, 1187
NlaIII	CATG	7 cut(s)	725, 736, 819, 1394, 1465, 1523, 1586
NlaIV	GGNNCC	6 cut(s)	6, 117, 144, 383, 405, 582
NmuCI	GTSAC	2 cut(s)	230, 523
NspI	RCATGY	2 cut(s)	725, 819
PaeI	GCATGC	1 cut(s)	725
PciI	ACATGT	1 cut(s)	815
PcsI	WCGNNNNNNNCGW	1 cut(s)	1027
PfeI	GAWTC	4 cut(s)	239, 245, 649, 1205
PinAI	ACCGGT	1 cut(s)	1273
PkrI	GCNGC	8 cut(s)	37, 343, 346, 640, 666, 782, 1145, 1189
PleI	GAGTC	4 cut(s)	227, 448, 520, 1531
PmaCI	CACGTG	1 cut(s)	1031
PmlI	CACGTG	1 cut(s)	1031
PpsI	GAGTC	4 cut(s)	227, 448, 520, 1531
Ppu21I	YACGTR	1 cut(s)	1031
PscI	ACATGT	1 cut(s)	815
Psp1406I	AACGTT	1 cut(s)	1001
Psp6I	CCWGG	2 cut(s)	88, 1059
PspCI	CACGTG	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	88, 1059
PspN4I	GGNNCC	6 cut(s)	6, 117, 144, 383, 405, 582
PspPI	GGNCC	3 cut(s)	382, 581, 736
PsuI	RGATCY	3 cut(s)	1225, 1351, 1657
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	1376
RsaNI	GTAC	1 cut(s)	1375
SaqAI	TTAA	3 cut(s)	504, 716, 1503
SatI	GCNGC	8 cut(s)	36, 342, 345, 639, 665, 781, 1144, 1188
Sau96I	GGNCC	3 cut(s)	382, 581, 736
SchI	GAGTC	4 cut(s)	227, 448, 520, 1532
ScrFI	CCNGG	2 cut(s)	90, 1061
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	5 cut(s)	64, 147, 685, 840, 1325
SinI	GGWCC	2 cut(s)	382, 581
SmlI	CTYRAG	2 cut(s)	855, 1407
SmoI	CTYRAG	2 cut(s)	855, 1407
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	7 cut(s)	48, 488, 612, 751, 839, 1158, 1288
SsiI	CCGC	5 cut(s)	178, 664, 667, 1144, 1231
SspMI	CTAG	6 cut(s)	447, 468, 603, 938, 1541, 1663
StyD4I	CCNGG	2 cut(s)	88, 1059
StyI	CCWWGG	1 cut(s)	1258
TaaI	ACNGT	1 cut(s)	1576
TaiI	ACGT	4 cut(s)	901, 1004, 1033, 1088
TaqI	TCGA	1 cut(s)	958
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	7 cut(s)	48, 488, 612, 751, 839, 1158, 1288
TatI	WGTACW	1 cut(s)	1374
TauI	GCSGC	2 cut(s)	667, 1146
TfiI	GAWTC	4 cut(s)	239, 245, 649, 1205
Tru1I	TTAA	3 cut(s)	504, 716, 1503
Tru9I	TTAA	3 cut(s)	504, 716, 1503
TscAI	CASTG	6 cut(s)	235, 930, 1153, 1240, 1453, 1618
TseFI	GTSAC	2 cut(s)	230, 523
TseI	GCWGC	6 cut(s)	35, 341, 344, 638, 780, 1187
Tsp45I	GTSAC	2 cut(s)	230, 523
TspDTI	ATGAA	6 cut(s)	18, 270, 564, 699, 1478, 1641
TspGWI	ACGGA	2 cut(s)	1170, 1273
TspRI	CASTG	6 cut(s)	235, 930, 1153, 1240, 1453, 1618
VpaK11BI	GGWCC	2 cut(s)	382, 581
XapI	RAATTY	2 cut(s)	48, 1288
XbaI	TCTAGA	1 cut(s)	1540
XceI	RCATGY	2 cut(s)	725, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	1152
XspI	CTAG	6 cut(s)	447, 468, 603, 938, 1541, 1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.