Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232775.1

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 469

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

atggagcgaatgacgaccaactttgattttgggtcttcaactttggcggtgactggctatgtcataactcatattgggttgtgggttgagccattttctcatagctcacgacgaggacgaggcttcactgaagcgaccaggcccagagctttgcgtgacgctagggttcatattgcgcagtactcgcttcccagggcggcgttgctgcttcaacgtgtgaggaggaaggaggaggatccggatgaggatatggatgccgaactcagctgggctttagagcaggcctctaatttgaagcttgattgcagtgagattggggatgataggccactttctggttgctcattctcacaagatggcaaattgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

123

Amino Acids

13.87

Weight (kDa)

5.59

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	47, 197
AclWI	GGATC	2 cut(s)	230, 243
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	39, 212, 295
AjnI	CCWGG	2 cut(s)	137, 191
AluBI	AGCT	4 cut(s)	105, 149, 267, 298
AluI	AGCT	4 cut(s)	105, 149, 267, 298
AlwI	GGATC	2 cut(s)	230, 243
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	3 cut(s)	140, 282, 326
ApeKI	GCWGC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	139, 193
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	198, 206
BlsI	GCNGC	2 cut(s)	199, 207
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	139, 193
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	139, 193
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BsaJI	CCNNGG	2 cut(s)	191, 192
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	139, 193
BseDI	CCNNGG	2 cut(s)	191, 192
BseGI	GGATG	3 cut(s)	247, 259, 325
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	2 cut(s)	235, 245
BseXI	GCAGC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	3 cut(s)	142, 284, 328
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	3 cut(s)	142, 284, 328
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	47, 197
BspANI	GGCC	3 cut(s)	142, 284, 328
BspCNI	CTCAG	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	230, 243
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	191, 192
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	139, 193
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	247, 259, 325
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	2 cut(s)	139, 193
BstSCI	CCNGG	2 cut(s)	137, 191
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	142, 284, 328
BtsCI	GGATG	3 cut(s)	247, 259, 325
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	126, 313
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	181
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	137, 191
FaiI	YATR	6 cut(s)	60, 65, 72, 102, 171, 251
Fnu4HI	GCNGC	2 cut(s)	198, 206
FokI	GGATG	3 cut(s)	254, 266, 332
Fsp4HI	GCNGC	2 cut(s)	198, 206
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	198, 206
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	142, 284, 328
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	108, 239
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	214
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	49, 155
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	2 cut(s)	289, 362
MnlI	CCTC	8 cut(s)	107, 113, 213, 216, 223, 226, 238, 295
MroI	TCCGGA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	139, 193
MvaI	CCWGG	2 cut(s)	139, 193
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	49, 155
NsbI	TGCGCA	1 cut(s)	177
PasI	CCCWGGG	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	199, 207
Psp6I	CCWGG	2 cut(s)	137, 191
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	137, 191
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	2 cut(s)	198, 206
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	139, 193
SetI	ASST	5 cut(s)	107, 151, 217, 269, 300
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	2 cut(s)	289, 362
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	47, 197
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	137, 191
TaiI	ACGT	1 cut(s)	217
TasI	AATT	2 cut(s)	289, 362
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	200
TscAI	CASTG	2 cut(s)	133, 313
TseFI	GTSAC	2 cut(s)	49, 155
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	2 cut(s)	49, 155
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	133, 313
Van91I	CCANNNNNTGG	1 cut(s)	335
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.