Prupe.7G050300_v2.0.a1

U4 U6 small nuclear ribonucleoprotein PRP4-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
8728556 .. 8732449
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G050300.1

Sequence Viewer

Length: 1590 bp
ATGACTATGGAGGAGGATAAACCTTCAACAACTGTAGCAGAGCCATCTGTTGCAGCAGTCCCAATTGCTCCAGTTCGACCTCCCGTACCGAGGCCGCCTGCGCCACAAAATGGTGAAGCGAGGGCGAGTACGAGCGACTCTGATTCCGATTCGGCGGGCCCTCCCCGAGCCACCGGCGTTTCGGGTGCCGAATACGAAATATCGGAAGAGAGCAGAGTGGTGAGAGAGCGACAGGAGAAAGCAATTCAAGAACTGTTGATGAAGCGCCGTGCTTCTGCTCTTGCTGTTCCCACTAACGACATGGCTGTGAGGGCTCGTCTTCGGCGGCTCGGCGAACCCATTACTCTTTTTGGAGAAAGAGAGATGGAGAGGCGAGACAGGTTGAGGATGATCATGGCAAGGCTTGATTCGCAAGGCGAGTTGGAGAAGTTGTTGAAAGTTCATGAGGAGGAGGAGGCTGCCGCTTCTGCTGCATTGGAAGATGGTGATGATCAAATGGTTCAGTACCCTTTTTACACTGAAGGATCCAAAGCTTTGATGAATGCGAGAATCGACATTGCAAAGTACTCCATTAAGAGGGCAGCTTCGCGGCTTGAACGGGCTCGAAGGAAGAAGGATGACCCAGATGAGGATATGGATGCAGAGTTGGACTGGGCTTTGAGGCAGGCATCAAGTTTGGAACTTGATTGTAGTGAGATTGGGGATGATAGGCCACTTTCTGGTTGTTCTTTCTCACATGATGGAAAACTGCTTGCCACTTGTGCTATAAGTGGAGTTGCCAAGTTGTGGAGCATGCCGGAAGCAAAGAAGTTTGCCACCTTGAAGGGACACACAGAGCGCCTGACTGATGTTAAGTTTTCTCCTGTGCATAACCTCGTAGCAACTGCTTCTGCTGACCGGACTGCAAAGTTGTGGAACACTGAAGGATCTCAGCTGGTGACATTTAAGGGCCATTTGGACCGTCTTGCACGTATTGCCTTCCATCCATCAGGAAAATATTTAGGTACAACTAGCTTTGACAAGACTTGGAGGCTATGGGATGTAGAAACTAGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTCTACGGGATAGCATTCCACCCTGATGGATCATTAGTGGCATCTTCTGGACTGGATGCACTTGCTCGTGTTTGGGACCTCCGTACGGGTAGAAGTATTCTTGCCTTGGAAGGCCATGTCAAGAAAGTTCTAGCACTCAGTTTCTCAGCAAATGGCTATTATTTAGCCAGTGGGGGTGAAGACAACACTTGCAGGATTTGGGATTTAAGAAAAAAGAAATCCATATACATCATTCCAGCACATTCCAATCTCATATCACAGGTCAAATTTGAGCCTCAAGAGGGATATTTCTTAGTAACTGCTTCGTATGATTTGACAACAAAGATATGGTCAGCCCGAGATTTTAAGCCTGTCAGGACGCTCTCTGGACATGAAGCAAAAGTTACTTCTTTGGATATTGCAGGAGATGGGCATCAAATTGCTACTGTATCACATGACCGAACCATCAAACTGTGGTCCAGCAGTACCAATGAGAAGGATCAGGCAATGGATGTAGATTAG

Protein Analysis

530

Amino Acids

58.58

Weight (kDa)

5.99

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 3 cut(s) 110, 719, 786
AccI GTMKAC 1 cut(s) 1092
AccII CGCG 1 cut(s) 589
AciI CCGC 5 cut(s) 95, 155, 325, 462, 589
AclWI GGATC 5 cut(s) 519, 532, 934, 1126, 1575
AcsI RAATTY 1 cut(s) 1355
AcuI CTGAAG 2 cut(s) 540, 942
AfaI GTAC 7 cut(s) 87, 130, 506, 566, 1006, 1174, 1555
AfiI CCNNNNNNNGG 8 cut(s) 90, 110, 576, 628, 719, 786, 1174, 1370
AgsI TTSAA 6 cut(s) 27, 248, 436, 596, 823, 1070
AhlI ACTAGT 1 cut(s) 1049
AluBI AGCT 4 cut(s) 533, 584, 934, 1014
AluI AGCT 4 cut(s) 533, 584, 934, 1014
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 5 cut(s) 519, 532, 934, 1126, 1575
Ama87I CYCGRG 2 cut(s) 165, 1425
AoxI GGCC 5 cut(s) 92, 157, 710, 949, 1201
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 4 cut(s) 53, 458, 470, 581
ApoI RAATTY 1 cut(s) 1355
ArsI GACNNNNNNTTYG 2 cut(s) 1403, 1435
AspLEI GCGC 3 cut(s) 103, 267, 840
AspS9I GGNCC 6 cut(s) 157, 158, 949, 958, 1165, 1545
AsuHPI GGTGA 5 cut(s) 125, 232, 497, 949, 1277
AvaI CYCGRG 2 cut(s) 165, 1425
AvaII GGWCC 3 cut(s) 958, 1165, 1545
BaeGI GKGCMC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 3 cut(s) 161, 316, 604
BauI CACGAG 1 cut(s) 1155
BbsI GAAGAC 2 cut(s) 311, 1275
BbvI GCAGC 4 cut(s) 65, 445, 457, 593
BccI CCATC 9 cut(s) 52, 358, 476, 734, 990, 994, 1109, 1490, 1541
BceAI ACGGC 1 cut(s) 252
BclI TGATCA 2 cut(s) 390, 490
BcoDI GTCTC 1 cut(s) 369
BcuI ACTAGT 1 cut(s) 1049
BfaI CTAG 3 cut(s) 1011, 1050, 1220
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 2 cut(s) 268, 841
BisI GCNGC 8 cut(s) 54, 95, 326, 459, 462, 471, 582, 590
BlsI GCNGC 8 cut(s) 55, 96, 327, 460, 463, 472, 583, 591
BmcAI AGTACT 1 cut(s) 566
Bme18I GGWCC 3 cut(s) 958, 1165, 1545
BmeT110I CYCGRG 2 cut(s) 165, 1425
BmgT120I GGNCC 6 cut(s) 157, 158, 949, 958, 1165, 1545
BmiI GGNNCC 4 cut(s) 159, 187, 526, 1166
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 5 cut(s) 628, 677, 1135, 1139, 1510
BmuI ACTGGG 1 cut(s) 661
BpiI GAAGAC 2 cut(s) 311, 1275
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 1350
BsaAI YACGTR 1 cut(s) 971
BsaBI GATNNNNATC 1 cut(s) 1500
BsaJI CCNNGG 2 cut(s) 89, 1194
BsaWI WCCGGW 1 cut(s) 897
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 8 cut(s) 90, 110, 576, 628, 719, 786, 1174, 1370
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 4 cut(s) 71, 656, 1146, 1257
Bse3DI GCAATG 2 cut(s) 555, 1581
Bse8I GATNNNNATC 1 cut(s) 1500
BseDI CCNNGG 2 cut(s) 89, 1194
BseGI GGATG 8 cut(s) 393, 622, 643, 709, 982, 1045, 1150, 1585
BseJI GATNNNNATC 1 cut(s) 1500
BseLI CCNNNNNNNGG 8 cut(s) 90, 110, 576, 628, 719, 786, 1174, 1370
BseMI GCAATG 2 cut(s) 555, 1581
BseMII CTCAG 3 cut(s) 944, 1240, 1248
BseNI ACTGG 4 cut(s) 71, 656, 1146, 1257
BseRI GAGGAG 4 cut(s) 26, 461, 464, 467
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 4 cut(s) 65, 445, 457, 593
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 5 cut(s) 94, 159, 712, 951, 1203
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 2 cut(s) 165, 1425
BsiSI CCGG 3 cut(s) 174, 797, 898
BsiWI CGTACG 1 cut(s) 1172
BslFI GGGAC 3 cut(s) 44, 840, 1178
BslI CCNNNNNNNGG 8 cut(s) 90, 110, 576, 628, 719, 786, 1174, 1370
BsmAI GTCTC 1 cut(s) 369
BsmFI GGGAC 3 cut(s) 44, 840, 1178
BsmI GAATGC 2 cut(s) 547, 1103
BsnI GGCC 5 cut(s) 94, 159, 712, 951, 1203
BsoBI CYCGRG 2 cut(s) 165, 1425
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 3 cut(s) 161, 316, 604
Bsp143I GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
BspACI CCGC 5 cut(s) 95, 155, 325, 462, 589
BspANI GGCC 5 cut(s) 94, 159, 712, 951, 1203
BspCNI CTCAG 3 cut(s) 943, 1239, 1247
BspFNI CGCG 1 cut(s) 589
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 159, 187, 526, 1166
BspPI GGATC 5 cut(s) 519, 532, 934, 1126, 1575
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 555, 1581
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 4 cut(s) 71, 656, 1146, 1257
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 89, 1194
BssMI GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
BssSI CACGAG 1 cut(s) 1155
BssT1I CCWWGG 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 1155
Bst4CI ACNGT 6 cut(s) 34, 255, 962, 1082, 1516, 1542
Bst6I CTCTTC 2 cut(s) 201, 1050
BstAPI GCANNNNNTGC 1 cut(s) 974
BstBAI YACGTR 1 cut(s) 971
BstC8I GCNNGC 5 cut(s) 99, 157, 666, 753, 794
BstDEI CTNAG 4 cut(s) 930, 1226, 1234, 1381
BstF5I GGATG 8 cut(s) 393, 622, 643, 709, 982, 1045, 1150, 1585
BstFNI CGCG 1 cut(s) 589
BstH2I RGCGCY 2 cut(s) 268, 841
BstHHI GCGC 3 cut(s) 103, 267, 840
BstKTI GATC 6 cut(s) 393, 493, 527, 929, 1121, 1570
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
BstMWI GCNNNNNNNGC 7 cut(s) 100, 311, 409, 467, 470, 761, 974
BstNSI RCATGY 1 cut(s) 796
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 4 cut(s) 65, 445, 457, 593
BstV2I GAAGAC 2 cut(s) 311, 1275
BstX2I RGATCY 2 cut(s) 524, 926
BstXI CCANNNNNNTGG 1 cut(s) 1115
BstYI RGATCY 2 cut(s) 524, 926
BsuRI GGCC 5 cut(s) 94, 159, 712, 951, 1203
BtsCI GGATG 8 cut(s) 393, 622, 643, 709, 982, 1045, 1150, 1585
BtsIMutI CAGTG 3 cut(s) 516, 918, 1264
Cac8I GCNNGC 5 cut(s) 99, 157, 666, 753, 794
CciI TCATGA 1 cut(s) 442
CfoI GCGC 3 cut(s) 103, 267, 840
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 6 cut(s) 157, 158, 949, 958, 1165, 1545
CseI GACGC 1 cut(s) 1456
Csp6I GTAC 7 cut(s) 86, 129, 505, 565, 1005, 1173, 1554
CviAII CATG 8 cut(s) 301, 394, 443, 737, 793, 1205, 1460, 1523
CviQI GTAC 7 cut(s) 86, 129, 505, 565, 1005, 1173, 1554
DdeI CTNAG 4 cut(s) 930, 1226, 1234, 1381
DpnI GATC 6 cut(s) 392, 492, 526, 928, 1120, 1569
DpnII GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
Eam1104I CTCTTC 2 cut(s) 201, 1050
EarI CTCTTC 2 cut(s) 201, 1050
Eco130I CCWWGG 1 cut(s) 1194
Eco24I GRGCYC 3 cut(s) 161, 316, 604
Eco47I GGWCC 3 cut(s) 958, 1165, 1545
Eco57I CTGAAG 2 cut(s) 540, 942
Eco88I CYCGRG 2 cut(s) 165, 1425
EcoO109I RGGNCCY 2 cut(s) 158, 1165
EcoT14I CCWWGG 1 cut(s) 1194
EcoT38I GRGCYC 3 cut(s) 161, 316, 604
ErhI CCWWGG 1 cut(s) 1194
FaeI CATG 8 cut(s) 304, 397, 446, 740, 796, 1208, 1463, 1526
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 3 cut(s) 44, 840, 1178
FatI CATG 8 cut(s) 300, 393, 442, 736, 792, 1204, 1459, 1522
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 2 cut(s) 390, 490
FblI GTMKAC 1 cut(s) 1092
Fnu4HI GCNGC 8 cut(s) 54, 95, 326, 459, 462, 471, 582, 590
FokI GGATG 7 cut(s) 400, 629, 650, 716, 969, 1052, 1157
FriOI GRGCYC 3 cut(s) 161, 316, 604
Fsp4HI GCNGC 8 cut(s) 54, 95, 326, 459, 462, 471, 582, 590
FspBI CTAG 3 cut(s) 1011, 1050, 1220
GlaI GCGC 3 cut(s) 102, 266, 839
GluI GCNGC 8 cut(s) 54, 95, 326, 459, 462, 471, 582, 590
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 2 cut(s) 268, 841
HaeIII GGCC 5 cut(s) 94, 159, 712, 951, 1203
HapII CCGG 3 cut(s) 174, 797, 898
HgaI GACGC 1 cut(s) 1456
HhaI GCGC 3 cut(s) 103, 267, 840
Hin1II CATG 8 cut(s) 304, 397, 446, 740, 796, 1208, 1463, 1526
Hin6I GCGC 3 cut(s) 101, 265, 838
HinP1I GCGC 3 cut(s) 101, 265, 838
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 5 cut(s) 137, 143, 149, 407, 549
HpaII CCGG 3 cut(s) 174, 797, 898
HphI GGTGA 5 cut(s) 125, 232, 497, 949, 1277
Hpy166II GTNNAC 1 cut(s) 1093
Hpy188I TCNGA 3 cut(s) 142, 148, 205
Hpy188III TCNNGA 9 cut(s) 248, 443, 990, 1070, 1137, 1210, 1367, 1444, 1455
Hpy8I GTNNAC 1 cut(s) 1093
HpyCH4III ACNGT 6 cut(s) 34, 255, 962, 1082, 1516, 1542
HpyCH4IV ACGT 1 cut(s) 970
HpyF10VI GCNNNNNNNGC 7 cut(s) 100, 311, 409, 467, 470, 761, 974
HpyF3I CTNAG 4 cut(s) 930, 1226, 1234, 1381
HpySE526I ACGT 1 cut(s) 970
Hsp92II CATG 8 cut(s) 304, 397, 446, 740, 796, 1208, 1463, 1526
HspAI GCGC 3 cut(s) 101, 265, 838
Ksp22I TGATCA 2 cut(s) 390, 490
Kzo9I GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
LmnI GCTCC 2 cut(s) 73, 789
Lsp1109I GCAGC 4 cut(s) 65, 445, 457, 593
LweI GCATC 5 cut(s) 628, 677, 1135, 1139, 1510
MaeI CTAG 3 cut(s) 1011, 1050, 1220
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 4 cut(s) 937, 1076, 1384, 1471
MalI GATC 6 cut(s) 392, 492, 526, 928, 1120, 1569
MboI GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
MboII GAAGA 8 cut(s) 218, 311, 491, 622, 1058, 1067, 1125, 1280
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 2 cut(s) 524, 926
MhlI GDGCHC 3 cut(s) 161, 316, 604
MluCI AATT 4 cut(s) 63, 243, 1355, 1506
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 402, 627
MseI TTAA 5 cut(s) 573, 852, 945, 1295, 1434
MslI CAYNNNNRTG 2 cut(s) 305, 1113
MspA1I CMGCKG 1 cut(s) 934
MspI CCGG 3 cut(s) 174, 797, 898
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 2 cut(s) 547, 1103
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 7 cut(s) 100, 311, 409, 467, 470, 761, 974
NdeII GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
NlaIII CATG 8 cut(s) 304, 397, 446, 740, 796, 1208, 1463, 1526
NlaIV GGNNCC 4 cut(s) 159, 187, 526, 1166
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 937, 1076
NspI RCATGY 1 cut(s) 796
PaeI GCATGC 1 cut(s) 796
PagI TCATGA 1 cut(s) 442
PctI GAATGC 2 cut(s) 547, 1103
PfeI GAWTC 4 cut(s) 143, 149, 407, 549
Pfl23II CGTACG 1 cut(s) 1172
PflMI CCANNNNNTGG 3 cut(s) 110, 719, 786
PkrI GCNGC 8 cut(s) 55, 96, 327, 460, 463, 472, 583, 591
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 971
PpuMI RGGWCCY 1 cut(s) 1165
Psp5II RGGWCCY 1 cut(s) 1165
PspLI CGTACG 1 cut(s) 1172
PspN4I GGNNCC 4 cut(s) 159, 187, 526, 1166
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 6 cut(s) 157, 158, 949, 958, 1165, 1545
PspPPI RGGWCCY 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 524, 926
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 7 cut(s) 87, 130, 506, 566, 1006, 1174, 1555
RsaNI GTAC 7 cut(s) 86, 129, 505, 565, 1005, 1173, 1554
RseI CAYNNNNRTG 2 cut(s) 305, 1113
SaqAI TTAA 5 cut(s) 573, 852, 945, 1295, 1434
SatI GCNGC 8 cut(s) 54, 95, 326, 459, 462, 471, 582, 590
Sau3AI GATC 6 cut(s) 390, 490, 524, 926, 1118, 1567
Sau96I GGNCC 6 cut(s) 157, 158, 949, 958, 1165, 1545
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 3 cut(s) 161, 316, 604
SfaNI GCATC 5 cut(s) 628, 677, 1135, 1139, 1510
SfcI CTRYAG 1 cut(s) 33
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 3 cut(s) 958, 1165, 1545
SmiMI CAYNNNNRTG 2 cut(s) 305, 1113
SmlI CTYRAG 1 cut(s) 1365
SmoI CTYRAG 1 cut(s) 1365
SpeI ACTAGT 1 cut(s) 1049
SphI GCATGC 1 cut(s) 796
Sse9I AATT 4 cut(s) 63, 243, 1355, 1506
SsiI CCGC 5 cut(s) 95, 155, 325, 462, 589
SspI AATATT 1 cut(s) 998
SspMI CTAG 3 cut(s) 1011, 1050, 1220
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 6 cut(s) 34, 255, 962, 1082, 1516, 1542
TaiI ACGT 1 cut(s) 973
TaqI TCGA 3 cut(s) 76, 552, 604
TaqII GACCGA 1 cut(s) 1542
TasI AATT 4 cut(s) 63, 243, 1355, 1506
TatI WGTACW 1 cut(s) 564
TauI GCSGC 4 cut(s) 97, 328, 464, 592
TfiI GAWTC 4 cut(s) 143, 149, 407, 549
Tru1I TTAA 5 cut(s) 573, 852, 945, 1295, 1434
Tru9I TTAA 5 cut(s) 573, 852, 945, 1295, 1434
TscAI CASTG 3 cut(s) 523, 925, 1264
TseFI GTSAC 2 cut(s) 937, 1076
TseI GCWGC 4 cut(s) 53, 458, 470, 581
Tsp45I GTSAC 2 cut(s) 937, 1076
TspDTI ATGAA 4 cut(s) 275, 431, 554, 1476
TspGWI ACGGA 1 cut(s) 1160
TspRI CASTG 3 cut(s) 523, 925, 1264
Van91I CCANNNNNTGG 3 cut(s) 110, 719, 786
VpaK11BI GGWCC 3 cut(s) 958, 1165, 1545
XapI RAATTY 1 cut(s) 1355
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 1092
XspI CTAG 3 cut(s) 1011, 1050, 1220
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.