Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

14806377 .. 14806826

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAGAAAAGAAACCTCTATCAACTGTCATGGACCTATTTGTTGCAGCACCCCAACTTACTCCAATCCGCGCTCTTGTACTCAGATCGCCACCACAAAATGGGGAAGCAAGGACCAACACAAGCGACTCAAATGATTCTAACTCGAAAGAGCCTCATAACCCACCAGCGTCGTCTCGGGTGGGTAGTACAAGGTATCGGAAGAGAGTAGGGTGGTGTAAGAATGGCATGAGAATGCAGGAGCTACTAATGAAGCGTCGTGCTTATACTCTTGTTGTTCCCACCAACGACATGGCCGTGAGGGCTTGGCTTCAACGGCTTGGCGAACCCATTACTTTCTTTAGGGAGAGAGAGATGGAAATACGAGGCAGATTGAGGATAATCATGGTGAGGCTTGATTCCCAAATGAAGTTGAGGAGGAGAAAGTTGTGGCTTCTTCCGTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

150

Amino Acids

17.43

Weight (kDa)

11.3

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	294
AfaI	GTAC	2 cut(s)	81, 190
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	34, 114
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	34, 114
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	2 cut(s)	281, 332
BcoDI	GTCTC	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	34, 114
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	34, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	430, 433
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	72
BssMI	GATC	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 316
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	34, 114
CseI	GACGC	2 cut(s)	159, 245
Csp6I	GTAC	2 cut(s)	80, 189
CviAII	CATG	4 cut(s)	31, 229, 292, 385
CviJI	RGCY	8 cut(s)	154, 244, 296, 305, 310, 319, 394, 433
CviKI_1	RGCY	8 cut(s)	154, 244, 296, 305, 310, 319, 394, 433
CviQI	GTAC	2 cut(s)	80, 189
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	34, 114
Eco88I	CYCGRG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	4 cut(s)	34, 232, 295, 388
FaiI	YATR	6 cut(s)	32, 159, 230, 267, 293, 386
FatI	CATG	4 cut(s)	30, 228, 291, 384
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	296
HgaI	GACGC	2 cut(s)	159, 245
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	34, 232, 295, 388
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	128, 137, 398
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	86, 201
Hpy99I	CGWCG	2 cut(s)	175, 261
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	47, 238, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 316
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	34, 232, 295, 388
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	2 cut(s)	180, 224
Lsp1109I	GCAGC	1 cut(s)	59
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	17, 214, 428
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	8 cut(s)	27, 165, 294, 359, 369, 384, 408, 411
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	2 cut(s)	233, 296
Mva1269I	GAATGC	1 cut(s)	240
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	302, 316
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	34, 232, 295, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	137, 398
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	34, 114
RsaI	GTAC	2 cut(s)	81, 190
RsaNI	GTAC	2 cut(s)	80, 189
RseI	CAYNNNNRTG	2 cut(s)	233, 296
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	34, 114
SchI	GAGTC	1 cut(s)	122
SetI	ASST	4 cut(s)	19, 39, 197, 246
SinI	GGWCC	2 cut(s)	34, 114
SmiMI	CAYNNNNRTG	2 cut(s)	233, 296
SsiI	CCGC	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	146
TatI	WGTACW	2 cut(s)	79, 188
TfiI	GAWTC	2 cut(s)	137, 398
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	266, 422
TspGWI	ACGGA	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	34, 114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.