Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

18839879 .. 18840283

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCACTACCTACTACTTTTGAGCACGGGTGTTTCATACATCTGGCGGCTTCTGTTGGAGGATGCCTGTGTGCATTTGATTTACAAAATGTTAAGGCTAGTGGCTCTATCTATATGTGGGTCATGAGAGAATATGGGGTGGCTGACTCCTGGACTAAGCTCTTCAACTTTAAGGTCTCCAGTCAGCCCGAGGATATATGTATTTGGGGGCCGATATTCCTTGGGGACACTAGTATAATTTTTGAGTTTCAGAATGCGATTAAAGAGATTGTTGGTGGCAGGATACGTATGAATGATTTCATGTTGATAAGGAGTGTTCATGAGAACGAAGAGAAGCTTGAAACGTGTGCCTCGCGAGAGTTCATGATTGCATATGAAGAGACCCTACTTTGGCTAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

4.77

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	166, 341
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	160, 337
AluI	AGCT	2 cut(s)	160, 337
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	181, 374
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
Bbv12I	GWGCWC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	181, 374
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	2 cut(s)	99, 231
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	287
BsaI	GGTCTC	2 cut(s)	181, 374
BsaJI	CCNNGG	2 cut(s)	189, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	189, 220
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	181, 374
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	2 cut(s)	181, 374
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp68I	TCGCGA	1 cut(s)	355
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	355
BspHI	TCATGA	3 cut(s)	123, 319, 363
BspLI	GGNNCC	1 cut(s)	210
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	2 cut(s)	181, 374
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	189, 220
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	151
Bst6I	CTCTTC	3 cut(s)	167, 324, 372
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	181, 374
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	287
BstUI	CGCG	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	68
BtuMI	TCGCGA	1 cut(s)	355
CciI	TCATGA	3 cut(s)	123, 319, 363
Cfr13I	GGNCC	1 cut(s)	209
CviAII	CATG	4 cut(s)	124, 301, 320, 364
CviJI	RGCY	9 cut(s)	50, 98, 105, 143, 160, 187, 211, 337, 394
CviKI_1	RGCY	9 cut(s)	50, 98, 105, 143, 160, 187, 211, 337, 394
DdeI	CTNAG	1 cut(s)	156
Eam1104I	CTCTTC	3 cut(s)	167, 324, 372
EarI	CTCTTC	3 cut(s)	167, 324, 372
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	220
Eco31I	GGTCTC	2 cut(s)	181, 374
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	127, 304, 323, 367
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	123, 300, 319, 363
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	99, 231
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	4 cut(s)	127, 304, 323, 367
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	124, 320, 354, 364
HpyCH4IV	ACGT	2 cut(s)	286, 344
HpyCH4V	TGCA	2 cut(s)	74, 371
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	286, 344
Hsp92II	CATG	4 cut(s)	127, 304, 323, 367
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	6 cut(s)	29, 80, 136, 163, 193, 265
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	99, 231
MaeII	ACGT	2 cut(s)	286, 344
MboII	GAAGA	3 cut(s)	154, 341, 389
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	53, 184, 361
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	3 cut(s)	93, 171, 261
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	373
NlaIII	CATG	4 cut(s)	127, 304, 323, 367
NlaIV	GGNNCC	1 cut(s)	210
NruI	TCGCGA	1 cut(s)	355
PagI	TCATGA	3 cut(s)	123, 319, 363
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	93, 171, 261
SatI	GCNGC	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	13, 162, 177, 289, 339, 347
SfaNI	GCATC	1 cut(s)	53
SnaBI	TACGTA	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	2 cut(s)	99, 231
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	2 cut(s)	289, 347
TasI	AATT	1 cut(s)	237
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	93, 171, 261
Tru9I	TTAA	3 cut(s)	93, 171, 261
TspDTI	ATGAA	6 cut(s)	25, 289, 305, 308, 352, 390
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	99, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.