Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Reverse (-)

19461735 .. 19466909

Gene Structure 5175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGGTGTCTTGCTTGCCAACGTGCTCAAGGAGACACGATGCTGTAAAGGCGATGAGGGTTCTTATTCATCGATCGGCGAGGCATGATCTTAATTCTTTGGTTCAAGGTTTTCAGTTTCCAAAGAAAAGAGATGACGATGGAGGAGGAGGAGGAGAAGCTTCTCTCCTCTATAGCAGCTTCCGAGCCCCCCAAAACGGCGAAGCAGCAGCCAGGACGACCGACTCCGGTTCCGATGACGACGCCGCCGCCGCTCAAGGAGCCTCCTCCGCCGGAGTCGAATACCAGATATCCGAAGAGCAAAAAGCGGCGCGAGAGCGACAGGAGAGAGCAATGCAGCAGCTCTTGATGAAGCGCCGCGCTTCCGCCCTCGCCGTCCCCACCAACGACAACGCCGTCCGGACTCGTCTCCGGCGCCTCGGCGAGCCCATGACTCTGTTCGGAGAGCGAGAGATGGAAAGGCGAGACCGGCTCAGGTCGATTCTGGCCAAGCTCGATTCGGCGCAGCTGGAGACGCTGATGAAGGCTCACGACGAGGACGAGGCTTCCGCTGCGGGTGCTCAAGGCGCCGACGATTCTGACTTCGATCAAGAAATTCAGTACCCCTTCTTCACTGAAGCGACCAGGCCCAGAGCTTTGCGTGACGCTAGGGTTCATATTGCGCAGTACTCGCTTTCCAGGGCGGCGTTGCGGCTTCAACGTGCGAGGAGGAAGGAGGAGGATCCGGATGAGGATATGGATGCCGAGATCAACTGGGCTTTAGAGCAGGCCTCCAATTTGAAGCTTGATTGCAGTGAGATTGGGGATGATAGGCCACTTTCTGGTTGCTCATTCTCACAAGATGGCAAATTGCTTGCCGCCTGCGCTTTAAGTCCAGTTGCCAAGCTGTGGAGCATGCCTCAAGTAACAAAGGTTGCCACCTTGAAGGGACATACAGAGCGCTTAACTGATGTTGCATTTTCTCCTGTGCAAAATCATCTCTTGGCAACTGCGTCTGCGGATAGGACTGCAAGGTTGTGGAACAGCGAAGGGGCACAGCTGATGACATTCGGGGGACATTTGGACCGTCTTGCCCGCATTGCCTTCCATCCCTCAGGAAAGTACTTGGGTACAACTAGCTTTGACAAGACTTGGAGGCTGTGGGATGTAGAGACTGGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTCTATGCTATAGACTTCCACCCAGATGGCTCATTGGTTGCAACTGCTGGATTGGATGCGCTTGCTCGTGTTTGGGACCTCCGTAGTGGTAGAAGTATTCTTACCTTGGAAGGCCATGTCAAAAAAGTTCTTGCACTCAGTTTTTCACCAAATGGTTATTATCTAGCCACTGGGGGTGAAGACAACACTTGTAGGATATGGGATTTAAGGAACAAGAAATCCATATACATTATTCCAGCACACTCCAATCTCATATCACAGGTCAAATTTGAACCTCAAGAGGGATATTTCTTGGTAACTGGCTCCTATGATATGACAGCAAAGATCTGGTCAGCCCGAGATTTTAAGCCTGTCAAGACGCTCTCTGGACACGAATCAAAAGTCACTTCCTTGGATGTTTCAGGAGATGGACATCACATTGCTACTGTATCACATGACCGAACTATCAAACTATGGTCGAGCAGTACCAATGAGAAGGACCAGGAAATGGATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

563

Amino Acids

62.38

Weight (kDa)

6.05

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	132 - 159	5.4e-11	pre-mRNA processing factor 4 (PRP4) like
Beta-prop_WDR3_2nd	PF25172	261 - 384	2.5e-11	WDR3 second beta-propeller domain
EIF3I	PF24805	267 - 342	7.8e-07	EIF3I
WD40_Gbeta	PF25391	267 - 389	1.1e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	267 - 424	3.4e-23	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	269 - 452	4.7e-42	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	270 - 347	4.1e-08	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	270 - 388	2.7e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	275 - 342	3.5e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	276 - 386	2e-19	THOC3 beta-propeller domain
WD40_Prp19	PF24814	282 - 498	1.7e-56	Prp19 WD40 domain
WD40	PF00400	303 - 340	7.9e-08	WD domain, G-beta repeat
WDR55	PF24796	312 - 447	2.1e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	323 - 424	2.1e-09	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	324 - 388	2.9e-07	WDHD1 first WD40 domain
WD40	PF00400	345 - 381	6.3e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	348 - 429	2e-06	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	348 - 549	6.9e-29	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	356 - 491	8.2e-29	THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	366 - 453	4.7e-07	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	370 - 549	6.3e-32	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	377 - 507	8.9e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	379 - 550	1.9e-37	WDR3 first beta-propeller domain
WDR55	PF24796	388 - 502	3.1e-11	WDR55
EIF3I	PF24805	390 - 487	1.3e-11	EIF3I
WD40	PF00400	391 - 423	6.5e-08	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	392 - 459	1.5e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	392 - 555	5.6e-42	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	393 - 497	9.9e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd	PF25172	393 - 465	2.4e-10	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	397 - 507	3.9e-08	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	397 - 476	3.5e-13	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	398 - 557	3.1e-23	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	428 - 465	1.9e-11	WD domain, G-beta repeat
ANAPC4_WD40	PF12894	428 - 488	7.5e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_TEP1_2nd	PF25047	431 - 554	6.1e-14	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	432 - 506	8.2e-10	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	433 - 555	1.3e-12	MABP1/WDR62 first WD40 domain
Beta-prop_EIPR1	PF23609	437 - 507	6.5e-06	EIPR1 beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	452 - 536	6.3e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	454 - 551	6.6e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	472 - 560	1.2e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	475 - 553	3.2e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	477 - 556	1.2e-08	EIF3I
WD40_Prp19	PF24814	482 - 550	1.1e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	485 - 559	1.4e-10	WDHD1 first WD40 domain
WD40	PF00400	513 - 550	1.4e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc16I	TGCGCA	1 cut(s)	660
AccB1I	GGYRCC	2 cut(s)	411, 563
AccB7I	CCANNNNNTGG	3 cut(s)	818, 885, 1678
AccBSI	CCGCTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	310, 357
AccIII	TCCGGA	2 cut(s)	396, 721
AclWI	GGATC	2 cut(s)	713, 726
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	591, 1457
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	3 cut(s)	240, 412, 564
AfaI	GTAC	5 cut(s)	599, 665, 1100, 1108, 1657
AfeI	AGCGCT	1 cut(s)	938
AfiI	CCNNNNNNNGG	5 cut(s)	194, 818, 885, 1472, 1678
AgsI	TTSAA	6 cut(s)	104, 695, 778, 922, 1172, 1463
AjnI	CCWGG	4 cut(s)	209, 620, 674, 1671
AloI	GAACNNNNNNTCC	2 cut(s)	1394, 1426
Alw21I	GWGCWC	2 cut(s)	26, 559
Alw26I	GTCTC	5 cut(s)	25, 410, 456, 503, 1142
AlwI	GGATC	2 cut(s)	713, 726
Ama87I	CYCGRG	1 cut(s)	1527
Aor13HI	TCCGGA	2 cut(s)	396, 721
Aor51HI	AGCGCT	1 cut(s)	938
AoxI	GGCC	5 cut(s)	483, 623, 765, 809, 1303
ApeKI	GCWGC	7 cut(s)	174, 203, 206, 334, 337, 502, 548
ApoI	RAATTY	2 cut(s)	591, 1457
ArsI	GACNNNNNNTTYG	4 cut(s)	1505, 1537, 1557, 1589
AspS9I	GGNCC	4 cut(s)	624, 1060, 1267, 1669
AsuHPI	GGTGA	3 cut(s)	1166, 1329, 1379
AvaI	CYCGRG	1 cut(s)	1527
AvaII	GGWCC	3 cut(s)	1060, 1267, 1669
AxyI	CCTNAGG	1 cut(s)	1090
BaeGI	GKGCMC	1 cut(s)	1033
BalI	TGGCCA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	718
BanI	GGYRCC	2 cut(s)	411, 563
BanII	GRGCYC	2 cut(s)	187, 426
BarI	GAAGNNNNNNTAC	4 cut(s)	590, 622, 1276, 1308
BauI	CACGAG	1 cut(s)	1257
BbsI	GAAGAC	1 cut(s)	1377
Bbv12I	GWGCWC	2 cut(s)	26, 559
BbvI	GCAGC	7 cut(s)	186, 215, 218, 346, 349, 514, 535
BccI	CCATC	6 cut(s)	131, 445, 833, 1092, 1211, 1592
BceAI	ACGGC	3 cut(s)	211, 356, 377
BciT130I	CCWGG	4 cut(s)	211, 622, 676, 1673
BcoDI	GTCTC	5 cut(s)	25, 410, 456, 503, 1142
BfaI	CTAG	3 cut(s)	645, 1113, 1355
BfmI	CTRYAG	2 cut(s)	169, 1200
BfoI	RGCGCY	4 cut(s)	355, 415, 567, 940
BglII	AGATCT	1 cut(s)	1515
BmcAI	AGTACT	2 cut(s)	665, 1100
Bme1390I	CCNGG	4 cut(s)	211, 622, 676, 1673
Bme18I	GGWCC	3 cut(s)	1060, 1267, 1669
BmeT110I	CYCGRG	1 cut(s)	1527
BmgT120I	GGNCC	4 cut(s)	624, 1060, 1267, 1669
BmiI	GGNNCC	7 cut(s)	229, 259, 413, 565, 720, 1268, 1495
BmrFI	CCNGG	4 cut(s)	211, 622, 676, 1673
BmrI	ACTGGG	2 cut(s)	760, 1371
BmsI	GCATC	3 cut(s)	28, 727, 1237
BmuI	ACTGGG	2 cut(s)	760, 1371
BpiI	GAAGAC	1 cut(s)	1377
BplI	GAGNNNNNCTC	6 cut(s)	453, 485, 752, 784, 880, 912
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	5 cut(s)	10, 237, 543, 882, 1452
Bsa29I	ATCGAT	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	1602
BsaHI	GRCGYC	3 cut(s)	240, 412, 564
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	415, 675, 1296, 1581
BsaWI	WCCGGW	3 cut(s)	224, 396, 721
Bsc4I	CCNNNNNNNGG	5 cut(s)	194, 818, 885, 1472, 1678
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	5 cut(s)	755, 872, 1156, 1366, 1495
Bse21I	CCTNAGG	1 cut(s)	1090
Bse3DI	GCAATG	3 cut(s)	336, 1074, 1608
Bse8I	GATNNNNATC	1 cut(s)	1602
BseAI	TCCGGA	2 cut(s)	396, 721
BseBI	CCWGG	4 cut(s)	211, 622, 676, 1673
BseCI	ATCGAT	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	415, 675, 1296, 1581
BseGI	GGATG	8 cut(s)	730, 742, 808, 1084, 1147, 1252, 1591, 1687
BseJI	GATNNNNATC	1 cut(s)	1602
BseLI	CCNNNNNNNGG	5 cut(s)	194, 818, 885, 1472, 1678
BseMI	GCAATG	3 cut(s)	336, 1074, 1608
BseMII	CTCAG	3 cut(s)	484, 1104, 1342
BseNI	ACTGG	5 cut(s)	755, 872, 1156, 1366, 1495
BseRI	GAGGAG	8 cut(s)	155, 156, 159, 162, 165, 253, 718, 728
BseSI	GKGCMC	1 cut(s)	1033
BseXI	GCAGC	7 cut(s)	186, 215, 218, 346, 349, 514, 535
Bsh1236I	CGCG	2 cut(s)	310, 357
Bsh1285I	CGRYCG	2 cut(s)	74, 219
BshFI	GGCC	5 cut(s)	485, 625, 767, 811, 1305
BshNI	GGYRCC	2 cut(s)	411, 563
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	2 cut(s)	74, 219
BsiHKAI	GWGCWC	2 cut(s)	26, 559
BsiHKCI	CYCGRG	1 cut(s)	1527
BsiSI	CCGG	6 cut(s)	225, 270, 397, 409, 466, 722
BslFI	GGGAC	4 cut(s)	359, 939, 1065, 1280
BslI	CCNNNNNNNGG	5 cut(s)	194, 818, 885, 1472, 1678
BsmAI	GTCTC	5 cut(s)	25, 410, 456, 503, 1142
BsmBI	CGTCTC	2 cut(s)	410, 503
BsmFI	GGGAC	4 cut(s)	359, 939, 1065, 1280
BsnI	GGCC	5 cut(s)	485, 625, 767, 811, 1305
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	1527
Bsp1286I	GDGCHC	5 cut(s)	26, 187, 426, 559, 1033
Bsp13I	TCCGGA	2 cut(s)	396, 721
Bsp143I	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
BspANI	GGCC	5 cut(s)	485, 625, 767, 811, 1305
BspCNI	CTCAG	3 cut(s)	483, 1103, 1341
BspDI	ATCGAT	1 cut(s)	70
BspEI	TCCGGA	2 cut(s)	396, 721
BspFNI	CGCG	2 cut(s)	310, 357
BspLI	GGNNCC	7 cut(s)	229, 259, 413, 565, 720, 1268, 1495
BspPI	GGATC	2 cut(s)	713, 726
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	411, 563
BspTNI	GGTCTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	3 cut(s)	336, 1074, 1608
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	5 cut(s)	755, 872, 1156, 1366, 1495
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	4 cut(s)	415, 675, 1296, 1581
BssMI	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
BssNI	GRCGYC	3 cut(s)	240, 412, 564
BssSI	CACGAG	1 cut(s)	1257
BssT1I	CCWWGG	2 cut(s)	1296, 1581
Bst2BI	CACGAG	1 cut(s)	1257
Bst2UI	CCWGG	4 cut(s)	211, 622, 676, 1673
Bst4CI	ACNGT	3 cut(s)	1064, 1184, 1618
Bst6I	CTCTTC	2 cut(s)	288, 1152
BstACI	GRCGYC	3 cut(s)	240, 412, 564
BstC8I	GCNNGC	8 cut(s)	14, 422, 765, 852, 859, 893, 1072, 1254
BstDEI	CTNAG	3 cut(s)	470, 1090, 1328
BstF5I	GGATG	8 cut(s)	730, 742, 808, 1084, 1147, 1252, 1591, 1687
BstFNI	CGCG	2 cut(s)	310, 357
BstH2I	RGCGCY	4 cut(s)	355, 415, 567, 940
BstKTI	GATC	6 cut(s)	74, 88, 586, 721, 747, 1518
BstMAI	GTCTC	5 cut(s)	25, 410, 456, 503, 1142
BstMBI	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
BstMCI	CGRYCG	2 cut(s)	74, 219
BstNI	CCWGG	4 cut(s)	211, 622, 676, 1673
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	4 cut(s)	209, 620, 674, 1671
BstSFI	CTRYAG	2 cut(s)	169, 1200
BstSLI	GKGCMC	1 cut(s)	1033
BstUI	CGCG	2 cut(s)	310, 357
BstV1I	GCAGC	7 cut(s)	186, 215, 218, 346, 349, 514, 535
BstV2I	GAAGAC	1 cut(s)	1377
BstX2I	RGATCY	2 cut(s)	718, 1515
BstXI	CCANNNNNNTGG	1 cut(s)	1217
BstYI	RGATCY	2 cut(s)	718, 1515
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	1090
BsuRI	GGCC	5 cut(s)	485, 625, 767, 811, 1305
BsuTUI	ATCGAT	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	8 cut(s)	730, 742, 808, 1084, 1147, 1252, 1591, 1687
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	3 cut(s)	609, 796, 1359
Cac8I	GCNNGC	8 cut(s)	14, 422, 765, 852, 859, 893, 1072, 1254
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	4 cut(s)	624, 1060, 1267, 1669
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	5 cut(s)	248, 520, 650, 978, 1558
Csp6I	GTAC	5 cut(s)	598, 664, 1099, 1107, 1656
CviAII	CATG	5 cut(s)	83, 427, 892, 1307, 1625
CviQI	GTAC	5 cut(s)	598, 664, 1099, 1107, 1656
DdeI	CTNAG	3 cut(s)	470, 1090, 1328
DinI	GGCGCC	2 cut(s)	413, 565
DpnI	GATC	6 cut(s)	73, 87, 585, 720, 746, 1517
DpnII	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	2 cut(s)	288, 1152
EarI	CTCTTC	2 cut(s)	288, 1152
EciI	GGCGGA	2 cut(s)	256, 352
Eco130I	CCWWGG	2 cut(s)	1296, 1581
Eco147I	AGGCCT	1 cut(s)	767
Eco24I	GRGCYC	2 cut(s)	187, 426
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	288
Eco47I	GGWCC	3 cut(s)	1060, 1267, 1669
Eco47III	AGCGCT	1 cut(s)	938
Eco57I	CTGAAG	1 cut(s)	633
Eco81I	CCTNAGG	1 cut(s)	1090
Eco88I	CYCGRG	1 cut(s)	1527
EcoO109I	RGGNCCY	1 cut(s)	1267
EcoRII	CCWGG	4 cut(s)	209, 620, 674, 1671
EcoRV	GATATC	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	1296, 1581
EcoT38I	GRGCYC	2 cut(s)	187, 426
EgeI	GGCGCC	2 cut(s)	413, 565
EheI	GGCGCC	2 cut(s)	413, 565
ErhI	CCWWGG	2 cut(s)	1296, 1581
Esp3I	CGTCTC	2 cut(s)	410, 503
FaeI	CATG	5 cut(s)	86, 430, 895, 1310, 1628
FalI	AAGNNNNNCTT	2 cut(s)	1149, 1181
FaqI	GGGAC	4 cut(s)	359, 939, 1065, 1280
FatI	CATG	5 cut(s)	82, 426, 891, 1306, 1624
FauI	CCCGC	2 cut(s)	544, 1079
FokI	GGATG	7 cut(s)	737, 749, 815, 1071, 1154, 1259, 1598
FriOI	GRGCYC	2 cut(s)	187, 426
FspBI	CTAG	3 cut(s)	645, 1113, 1355
FspI	TGCGCA	1 cut(s)	660
GsuI	CTGGAG	1 cut(s)	527
HaeII	RGCGCY	4 cut(s)	355, 415, 567, 940
HaeIII	GGCC	5 cut(s)	485, 625, 767, 811, 1305
HapII	CCGG	6 cut(s)	225, 270, 397, 409, 466, 722
HgaI	GACGC	5 cut(s)	248, 520, 650, 978, 1558
Hin1I	GRCGYC	3 cut(s)	240, 412, 564
Hin1II	CATG	5 cut(s)	86, 430, 895, 1310, 1628
HindIII	AAGCTT	2 cut(s)	156, 779
HinfI	GANTC	8 cut(s)	221, 273, 400, 430, 478, 494, 572, 1565
HpaII	CCGG	6 cut(s)	225, 270, 397, 409, 466, 722
HphI	GGTGA	3 cut(s)	1166, 1329, 1379
Hpy188I	TCNGA	5 cut(s)	182, 232, 292, 440, 577
Hpy99I	CGWCG	3 cut(s)	242, 533, 572
HpyAV	CCTTC	9 cut(s)	514, 613, 703, 916, 1019, 1090, 1169, 1295, 1660
HpyCH4III	ACNGT	3 cut(s)	1064, 1184, 1618
HpyCH4IV	ACGT	2 cut(s)	20, 697
HpyCH4V	TGCA	7 cut(s)	334, 789, 953, 967, 1007, 1232, 1325
HpyF3I	CTNAG	3 cut(s)	470, 1090, 1328
HpySE526I	ACGT	2 cut(s)	20, 697
Hsp92I	GRCGYC	3 cut(s)	240, 412, 564
Hsp92II	CATG	5 cut(s)	86, 430, 895, 1310, 1628
KasI	GGCGCC	2 cut(s)	411, 563
Kpn2I	TCCGGA	2 cut(s)	396, 721
Kzo9I	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	3 cut(s)	257, 888, 1499
Lsp1109I	GCAGC	7 cut(s)	186, 215, 218, 346, 349, 514, 535
LweI	GCATC	3 cut(s)	28, 727, 1237
MaeI	CTAG	3 cut(s)	645, 1113, 1355
MaeII	ACGT	2 cut(s)	20, 697
MaeIII	GTNAC	5 cut(s)	638, 901, 1178, 1486, 1573
MalI	GATC	6 cut(s)	73, 87, 585, 720, 746, 1517
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
MboII	GAAGA	5 cut(s)	305, 598, 1160, 1169, 1382
MflI	RGATCY	2 cut(s)	718, 1515
MhlI	GDGCHC	5 cut(s)	26, 187, 426, 559, 1033
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	5 cut(s)	91, 591, 772, 845, 1457
MluNI	TGGCCA	1 cut(s)	485
Mly113I	GGCGCC	2 cut(s)	412, 564
MlyI	GAGTC	4 cut(s)	215, 282, 394, 424
Mox20I	TGGCCA	1 cut(s)	485
MroI	TCCGGA	2 cut(s)	396, 721
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	5 cut(s)	90, 866, 941, 1397, 1536
MslI	CAYNNNNRTG	1 cut(s)	1215
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	3 cut(s)	505, 548, 1036
MspI	CCGG	6 cut(s)	225, 270, 397, 409, 466, 722
MspR9I	CCNGG	4 cut(s)	211, 622, 676, 1673
MteI	GCGCNGCGC	1 cut(s)	355
MvaI	CCWGG	4 cut(s)	211, 622, 676, 1673
MvnI	CGCG	2 cut(s)	310, 357
NarI	GGCGCC	2 cut(s)	412, 564
NdeII	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
NlaIII	CATG	5 cut(s)	86, 430, 895, 1310, 1628
NlaIV	GGNNCC	7 cut(s)	229, 259, 413, 565, 720, 1268, 1495
NmeAIII	GCCGAG	2 cut(s)	396, 766
NmuCI	GTSAC	3 cut(s)	638, 1178, 1573
NsbI	TGCGCA	1 cut(s)	660
NspI	RCATGY	1 cut(s)	895
PaeI	GCATGC	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 534
PfeI	GAWTC	4 cut(s)	478, 494, 572, 1565
PflMI	CCANNNNNTGG	3 cut(s)	818, 885, 1678
Ple19I	CGATCG	1 cut(s)	74
PleI	GAGTC	4 cut(s)	215, 281, 394, 424
PluTI	GGCGCC	2 cut(s)	415, 567
PpsI	GAGTC	4 cut(s)	215, 281, 394, 424
PpuMI	RGGWCCY	1 cut(s)	1267
Psp5II	RGGWCCY	1 cut(s)	1267
Psp6I	CCWGG	4 cut(s)	209, 620, 674, 1671
PspGI	CCWGG	4 cut(s)	209, 620, 674, 1671
PspN4I	GGNNCC	7 cut(s)	229, 259, 413, 565, 720, 1268, 1495
PspPI	GGNCC	4 cut(s)	624, 1060, 1267, 1669
PspPPI	RGGWCCY	1 cut(s)	1267
PsuI	RGATCY	2 cut(s)	718, 1515
PvuI	CGATCG	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	505, 1036
RsaI	GTAC	5 cut(s)	599, 665, 1100, 1108, 1657
RsaNI	GTAC	5 cut(s)	598, 664, 1099, 1107, 1656
RseI	CAYNNNNRTG	1 cut(s)	1215
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	5 cut(s)	90, 866, 941, 1397, 1536
Sau3AI	GATC	6 cut(s)	71, 85, 583, 718, 744, 1515
Sau96I	GGNCC	4 cut(s)	624, 1060, 1267, 1669
ScaI	AGTACT	2 cut(s)	665, 1100
SchI	GAGTC	4 cut(s)	215, 282, 394, 424
ScrFI	CCNGG	4 cut(s)	211, 622, 676, 1673
SduI	GDGCHC	5 cut(s)	26, 187, 426, 559, 1033
SfaNI	GCATC	3 cut(s)	28, 727, 1237
SfcI	CTRYAG	2 cut(s)	169, 1200
SfoI	GGCGCC	2 cut(s)	413, 565
SinI	GGWCC	3 cut(s)	1060, 1267, 1669
SmiMI	CAYNNNNRTG	1 cut(s)	1215
SmlI	CTYRAG	5 cut(s)	25, 252, 558, 897, 1467
SmoI	CTYRAG	5 cut(s)	25, 252, 558, 897, 1467
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	5 cut(s)	91, 591, 772, 845, 1457
SseBI	AGGCCT	1 cut(s)	767
SspDI	GGCGCC	2 cut(s)	411, 563
SspMI	CTAG	3 cut(s)	645, 1113, 1355
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	4 cut(s)	209, 620, 674, 1671
StyI	CCWWGG	2 cut(s)	1296, 1581
TaaI	ACNGT	3 cut(s)	1064, 1184, 1618
TaiI	ACGT	2 cut(s)	23, 700
TaqI	TCGA	6 cut(s)	70, 276, 476, 492, 582, 1649
TaqII	GACCGA	2 cut(s)	233, 1644
TasI	AATT	5 cut(s)	91, 591, 772, 845, 1457
TatI	WGTACW	2 cut(s)	663, 1098
TauI	GCSGC	8 cut(s)	245, 248, 251, 308, 357, 683, 691, 857
TfiI	GAWTC	4 cut(s)	478, 494, 572, 1565
Tru1I	TTAA	5 cut(s)	90, 866, 941, 1397, 1536
Tru9I	TTAA	5 cut(s)	90, 866, 941, 1397, 1536
TscAI	CASTG	3 cut(s)	616, 796, 1366
TseFI	GTSAC	3 cut(s)	638, 1178, 1573
TseI	GCWGC	7 cut(s)	174, 203, 206, 334, 337, 502, 548
Tsp45I	GTSAC	3 cut(s)	638, 1178, 1573
TspDTI	ATGAA	4 cut(s)	56, 362, 533, 641
TspGWI	ACGGA	1 cut(s)	1262
TspRI	CASTG	3 cut(s)	616, 796, 1366
Van91I	CCANNNNNTGG	3 cut(s)	818, 885, 1678
VpaK11BI	GGWCC	3 cut(s)	1060, 1267, 1669
XapI	RAATTY	2 cut(s)	591, 1457
XceI	RCATGY	1 cut(s)	895
XspI	CTAG	3 cut(s)	645, 1113, 1355
ZrmI	AGTACT	2 cut(s)	665, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.