Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

29780114 .. 29785359

Gene Structure 5246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGACGATGGAGGAGGAGGAGGAGAAGCTTCTCTCCTCTATAGCAGCTTCCGAGCCCCCCCAAAACGGCGAAGCAGCAGCCAGGACGACCGACTCCGACTCCGGTTCCGATGACGACGCCGCCGCCGCCGCCGCAGCTCAAGGAGCCTCCTCCGCCGGAGTCGAATACCATATATCCGAAGAGCAAAAAGCGGCGCGAGAGCGACAGGAGAGAGCAATGCAGCAGCTCTTGATGAAGCGCCGCGCTTCCGCCCTCGCCGTCCCCACCAACGACAACGCCGTCCGGACTCGTCTCCGGCGCCTCGGCGAGCCCATGACTCTGTTCGGAGAGCGAGAGATGGAAAGGCGGGACCGGCTCAGGTCGATTCTGGCCAAGCTCGATTCGGCGCAGCTGGAGACGCTGATGAAGGCTCACGACGAGGACGAGGCTTCTGCTGCTGGTGCTCAAGGCCCCGACGATTCTGACTTCGATCAAGAAATTCAGTACCCCTTCTTCACTGAAGCGACCAGGCCCAGAGCTTTGCGTGACGCTAGGGTTCAGATTGCTCACTACTCGATTCCCAGGGCGGCGTTGCGGCTTCAACGTGCGAGGAGGAAGGAGGAGGATCCGGATGAGGATATGGATGCCGAGATCAACTGGGCTTTAGAGCAGGCCTCCAATTTGAAGCTTGATTGCAGTGAGATTGGGGATGATAGGCCACTTTCTGGTTGCTCATTCTCACAAGATGGCAAATTGCTCGCCGCCTGCGCTTTAAGTCCAGTTGCCAAGCTGTGGAGCATGCCTCAAGTAACAAAGGTTGCCACCTTGAAGGGACATACAGAGCGCTTAACCGATGTTGCATTTTCTCCTGTGCAAAATCATCTCTTGGCAACTGCGTCTGCGGATAGGACTGCGAGGTTGTGGAACAGCGAAGGAGCACACCTGATGACATTCGGGGGACATTTGGACCGTCTTGCCCGCATTGCCTTCCATCCCTCAGGAAAGTACTTGGGTACAACTGGCTTTGACAAGACTTGGAGGCTGTGGGACGTAGAGACTGGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTCTATGCAATAGACTTCCACCTGGATGGCTCATTGGTTGCAACTGCTGGATTGGATGCGCTTGCTCGTGTTTGGGACCTCCGTAGTGGTAGAAGTATTCTTACGTTGGAAGGCCATGTCAAAAAAGTTCTTGCACTCAGTTTTTCACCAAATGGTTATTATCTAGCCACTGGGGGTGAAGACAACACTTGTAGGATATGGGATTTAAGGAAAAAGAAATCCATATACATTATTCCAGCACACTCCAATCTCATATCACAGGTCAAATTTGAACCTCAAGAGGGATATTTCTTGGTAACTGGCTCCTATGATATGACAGCAAAGATATGGTCAGCCCGAGATTTTAAGCCTGTCAAGACGCTCTCTGGACACGAATCAAAAGTTACTTCCTTGGATGTTTCAGGAGATGGACATCACATTGCTACTGTATCACATGACCGAACTATCAAACTATGGTCGAGCGGTACCAATGAGAAGGACCAGGAAATGGATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

525

Amino Acids

58.1

Weight (kDa)

5.43

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	94 - 121	5e-11	pre-mRNA processing factor 4 (PRP4) like
Beta-prop_WDR3_2nd	PF25172	222 - 346	3.1e-11	WDR3 second beta-propeller domain
EIF3I	PF24805	229 - 304	9.4e-07	EIF3I
WD40_Gbeta	PF25391	229 - 351	8.9e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	231 - 414	2.9e-41	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	232 - 350	2.2e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	232 - 308	5.3e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	237 - 347	1.5e-18	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	237 - 304	2.7e-07	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	238 - 385	1.4e-21	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	243 - 460	5.1e-55	Prp19 WD40 domain
WD40	PF00400	265 - 302	7.3e-08	WD domain, G-beta repeat
WDR55	PF24796	274 - 409	4.1e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	285 - 386	6e-09	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	287 - 350	1.9e-06	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	307 - 471	6.9e-21	CDC20/Fizzy WD40 domain
Beta-prop_EML	PF23409	313 - 518	2.1e-13	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	332 - 464	7.7e-13	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	333 - 511	4.5e-30	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st	PF25171	340 - 469	2.5e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	341 - 512	2.8e-36	WDR3 first beta-propeller domain
EIF3I	PF24805	352 - 449	1.5e-11	EIF3I
Beta-prop_THOC3	PF25174	353 - 453	2.4e-21	THOC3 beta-propeller domain
WD40	PF00400	353 - 385	3.1e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	355 - 427	1.4e-09	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	355 - 511	4.6e-25	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	359 - 451	6.6e-13	WDHD1 first WD40 domain
Beta-prop_EIPR1	PF23609	359 - 469	5.4e-08	EIPR1 beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	360 - 469	1e-07	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	360 - 518	3.1e-21	Echinoderm microtubule-associated protein second beta-propeller
ANAPC4_WD40	PF12894	383 - 450	9.8e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR5	PF25175	390 - 516	2.1e-29	WDR5 beta-propeller domain
WD40	PF00400	390 - 427	1.7e-11	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	393 - 513	2.6e-21	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	394 - 515	5.3e-14	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	394 - 456	2.7e-09	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	394 - 515	1.6e-12	MABP1/WDR62 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	414 - 498	8.4e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	416 - 512	7.2e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	432 - 522	1.8e-15	THOC3 beta-propeller domain
EIF3I	PF24805	439 - 517	2.2e-08	EIF3I
WD40_Prp19	PF24814	445 - 512	1.3e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	452 - 520	4.3e-10	WDHD1 first WD40 domain
WD40	PF00400	475 - 512	1.3e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	1541
AccB1I	GGYRCC	2 cut(s)	297, 1541
AccB7I	CCANNNNNTGG	3 cut(s)	704, 771, 1564
AccBSI	CCGCTC	1 cut(s)	1539
AccII	CGCG	2 cut(s)	196, 243
AccIII	TCCGGA	2 cut(s)	282, 607
AclWI	GGATC	2 cut(s)	599, 612
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	477, 1343
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	2 cut(s)	117, 298
AfaI	GTAC	4 cut(s)	485, 986, 994, 1543
AfeI	AGCGCT	1 cut(s)	824
AfiI	CCNNNNNNNGG	5 cut(s)	65, 704, 771, 1358, 1564
AgsI	TTSAA	5 cut(s)	581, 664, 808, 1058, 1349
AjnI	CCWGG	5 cut(s)	80, 506, 560, 1098, 1557
AluBI	AGCT	9 cut(s)	28, 47, 137, 226, 376, 391, 518, 667, 769
AluI	AGCT	9 cut(s)	28, 47, 137, 226, 376, 391, 518, 667, 769
Alw21I	GWGCWC	2 cut(s)	445, 919
Alw26I	GTCTC	3 cut(s)	296, 389, 1028
AlwI	GGATC	2 cut(s)	599, 612
Ama87I	CYCGRG	1 cut(s)	1413
Aor13HI	TCCGGA	2 cut(s)	282, 607
Aor51HI	AGCGCT	1 cut(s)	824
AoxI	GGCC	6 cut(s)	369, 448, 509, 651, 695, 1189
ApeKI	GCWGC	8 cut(s)	44, 74, 77, 134, 220, 223, 388, 434
ApoI	RAATTY	2 cut(s)	477, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	1391, 1423
Asp718I	GGTACC	1 cut(s)	1541
AspLEI	GCGC	8 cut(s)	196, 240, 245, 300, 388, 749, 825, 1138
AspS9I	GGNCC	6 cut(s)	349, 449, 510, 946, 1153, 1555
AsuHPI	GGTGA	3 cut(s)	1052, 1215, 1265
AvaI	CYCGRG	1 cut(s)	1413
AvaII	GGWCC	4 cut(s)	349, 946, 1153, 1555
AxyI	CCTNAGG	1 cut(s)	976
BalI	TGGCCA	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	604
BanI	GGYRCC	2 cut(s)	297, 1541
BanII	GRGCYC	2 cut(s)	57, 312
BarI	GAAGNNNNNNTAC	4 cut(s)	476, 508, 1162, 1194
BauI	CACGAG	1 cut(s)	1143
BbsI	GAAGAC	1 cut(s)	1263
Bbv12I	GWGCWC	2 cut(s)	445, 919
BbvI	GCAGC	8 cut(s)	56, 86, 89, 146, 232, 235, 400, 421
BccI	CCATC	5 cut(s)	331, 719, 978, 1097, 1478
BceAI	ACGGC	3 cut(s)	82, 242, 263
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 718, 752
BciT130I	CCWGG	5 cut(s)	82, 508, 562, 1100, 1559
BcoDI	GTCTC	3 cut(s)	296, 389, 1028
BfaI	CTAG	2 cut(s)	531, 1241
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	3 cut(s)	241, 301, 826
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	5 cut(s)	82, 508, 562, 1100, 1559
Bme18I	GGWCC	4 cut(s)	349, 946, 1153, 1555
BmeT110I	CYCGRG	1 cut(s)	1413
BmgT120I	GGNCC	6 cut(s)	349, 449, 510, 946, 1153, 1555
BmiI	GGNNCC	9 cut(s)	106, 145, 299, 350, 451, 606, 1154, 1381, 1543
BmrFI	CCNGG	5 cut(s)	82, 508, 562, 1100, 1559
BmrI	ACTGGG	2 cut(s)	646, 1257
BmsI	GCATC	2 cut(s)	613, 1123
BmuI	ACTGGG	2 cut(s)	646, 1257
BpiI	GAAGAC	1 cut(s)	1263
BplI	GAGNNNNNCTC	4 cut(s)	638, 670, 766, 798
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	4 cut(s)	123, 429, 768, 1338
BsaBI	GATNNNNATC	1 cut(s)	1488
BsaHI	GRCGYC	2 cut(s)	117, 298
BsaJI	CCNNGG	4 cut(s)	301, 560, 561, 1467
BsaWI	WCCGGW	3 cut(s)	101, 282, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 704, 771, 1358, 1564
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	6 cut(s)	641, 758, 1003, 1042, 1252, 1381
Bse21I	CCTNAGG	1 cut(s)	976
Bse3DI	GCAATG	3 cut(s)	222, 960, 1494
Bse8I	GATNNNNATC	1 cut(s)	1488
BseAI	TCCGGA	2 cut(s)	282, 607
BseBI	CCWGG	5 cut(s)	82, 508, 562, 1100, 1559
BseDI	CCNNGG	4 cut(s)	301, 560, 561, 1467
BseGI	GGATG	8 cut(s)	616, 628, 694, 970, 1108, 1138, 1477, 1573
BseJI	GATNNNNATC	1 cut(s)	1488
BseLI	CCNNNNNNNGG	5 cut(s)	65, 704, 771, 1358, 1564
BseMI	GCAATG	3 cut(s)	222, 960, 1494
BseMII	CTCAG	3 cut(s)	370, 990, 1228
BseNI	ACTGG	6 cut(s)	641, 758, 1003, 1042, 1252, 1381
BseRI	GAGGAG	8 cut(s)	25, 26, 29, 32, 35, 139, 604, 614
BseXI	GCAGC	8 cut(s)	56, 86, 89, 146, 232, 235, 400, 421
Bsh1236I	CGCG	2 cut(s)	196, 243
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	6 cut(s)	371, 450, 511, 653, 697, 1191
BshNI	GGYRCC	2 cut(s)	297, 1541
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	445, 919
BsiHKCI	CYCGRG	1 cut(s)	1413
BsiSI	CCGG	6 cut(s)	102, 156, 283, 295, 352, 608
BslFI	GGGAC	6 cut(s)	245, 362, 825, 951, 1040, 1166
BslI	CCNNNNNNNGG	5 cut(s)	65, 704, 771, 1358, 1564
BsmAI	GTCTC	3 cut(s)	296, 389, 1028
BsmBI	CGTCTC	2 cut(s)	296, 389
BsmFI	GGGAC	6 cut(s)	245, 362, 825, 951, 1040, 1166
BsnI	GGCC	6 cut(s)	371, 450, 511, 653, 697, 1191
BsoBI	CYCGRG	1 cut(s)	1413
Bsp1286I	GDGCHC	4 cut(s)	57, 312, 445, 919
Bsp13I	TCCGGA	2 cut(s)	282, 607
Bsp143I	GATC	3 cut(s)	469, 604, 630
BspANI	GGCC	6 cut(s)	371, 450, 511, 653, 697, 1191
BspCNI	CTCAG	3 cut(s)	369, 989, 1227
BspEI	TCCGGA	2 cut(s)	282, 607
BspFNI	CGCG	2 cut(s)	196, 243
BspLI	GGNNCC	9 cut(s)	106, 145, 299, 350, 451, 606, 1154, 1381, 1543
BspPI	GGATC	2 cut(s)	599, 612
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	297, 1541
BsrBI	CCGCTC	1 cut(s)	1539
BsrDI	GCAATG	3 cut(s)	222, 960, 1494
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	6 cut(s)	641, 758, 1003, 1042, 1252, 1381
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	4 cut(s)	301, 560, 561, 1467
BssMI	GATC	3 cut(s)	469, 604, 630
BssNI	GRCGYC	2 cut(s)	117, 298
BssSI	CACGAG	1 cut(s)	1143
BssT1I	CCWWGG	1 cut(s)	1467
Bst2BI	CACGAG	1 cut(s)	1143
Bst2UI	CCWGG	5 cut(s)	82, 508, 562, 1100, 1559
Bst4CI	ACNGT	3 cut(s)	950, 1070, 1504
Bst6I	CTCTTC	2 cut(s)	174, 1038
BstACI	GRCGYC	2 cut(s)	117, 298
BstC8I	GCNNGC	7 cut(s)	308, 651, 738, 745, 779, 958, 1140
BstDEI	CTNAG	3 cut(s)	356, 976, 1214
BstF5I	GGATG	8 cut(s)	616, 628, 694, 970, 1108, 1138, 1477, 1573
BstFNI	CGCG	2 cut(s)	196, 243
BstH2I	RGCGCY	3 cut(s)	241, 301, 826
BstHHI	GCGC	8 cut(s)	196, 240, 245, 300, 388, 749, 825, 1138
BstKTI	GATC	3 cut(s)	472, 607, 633
BstMAI	GTCTC	3 cut(s)	296, 389, 1028
BstMBI	GATC	3 cut(s)	469, 604, 630
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	5 cut(s)	82, 508, 562, 1100, 1559
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	5 cut(s)	80, 506, 560, 1098, 1557
BstSFI	CTRYAG	1 cut(s)	39
BstUI	CGCG	2 cut(s)	196, 243
BstV1I	GCAGC	8 cut(s)	56, 86, 89, 146, 232, 235, 400, 421
BstV2I	GAAGAC	1 cut(s)	1263
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	1103
BstYI	RGATCY	1 cut(s)	604
Bsu36I	CCTNAGG	1 cut(s)	976
BsuRI	GGCC	6 cut(s)	371, 450, 511, 653, 697, 1191
BtsCI	GGATG	8 cut(s)	616, 628, 694, 970, 1108, 1138, 1477, 1573
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	3 cut(s)	495, 682, 1245
Cac8I	GCNNGC	7 cut(s)	308, 651, 738, 745, 779, 958, 1140
CfoI	GCGC	8 cut(s)	196, 240, 245, 300, 388, 749, 825, 1138
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	6 cut(s)	349, 449, 510, 946, 1153, 1555
CseI	GACGC	5 cut(s)	125, 406, 536, 864, 1444
Csp6I	GTAC	4 cut(s)	484, 985, 993, 1542
CviAII	CATG	4 cut(s)	313, 778, 1193, 1511
CviQI	GTAC	4 cut(s)	484, 985, 993, 1542
DdeI	CTNAG	3 cut(s)	356, 976, 1214
DinI	GGCGCC	1 cut(s)	299
DpnI	GATC	3 cut(s)	471, 606, 632
DpnII	GATC	3 cut(s)	469, 604, 630
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	174, 1038
EarI	CTCTTC	2 cut(s)	174, 1038
EciI	GGCGGA	2 cut(s)	142, 238
Eco130I	CCWWGG	1 cut(s)	1467
Eco147I	AGGCCT	1 cut(s)	653
Eco24I	GRGCYC	2 cut(s)	57, 312
Eco47I	GGWCC	4 cut(s)	349, 946, 1153, 1555
Eco47III	AGCGCT	1 cut(s)	824
Eco57I	CTGAAG	1 cut(s)	519
Eco81I	CCTNAGG	1 cut(s)	976
Eco88I	CYCGRG	1 cut(s)	1413
EcoO109I	RGGNCCY	2 cut(s)	449, 1153
EcoRII	CCWGG	5 cut(s)	80, 506, 560, 1098, 1557
EcoT14I	CCWWGG	1 cut(s)	1467
EcoT38I	GRGCYC	2 cut(s)	57, 312
EgeI	GGCGCC	1 cut(s)	299
EheI	GGCGCC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	1467
Esp3I	CGTCTC	2 cut(s)	296, 389
FaeI	CATG	4 cut(s)	316, 781, 1196, 1514
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FaqI	GGGAC	6 cut(s)	245, 362, 825, 951, 1040, 1166
FatI	CATG	4 cut(s)	312, 777, 1192, 1510
FauI	CCCGC	2 cut(s)	339, 965
FokI	GGATG	7 cut(s)	623, 635, 701, 957, 1115, 1145, 1484
FriOI	GRGCYC	2 cut(s)	57, 312
FspBI	CTAG	2 cut(s)	531, 1241
GlaI	GCGC	8 cut(s)	195, 239, 244, 299, 387, 748, 824, 1137
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	3 cut(s)	241, 301, 826
HaeIII	GGCC	6 cut(s)	371, 450, 511, 653, 697, 1191
HapII	CCGG	6 cut(s)	102, 156, 283, 295, 352, 608
HgaI	GACGC	5 cut(s)	125, 406, 536, 864, 1444
HhaI	GCGC	8 cut(s)	196, 240, 245, 300, 388, 749, 825, 1138
Hin1I	GRCGYC	2 cut(s)	117, 298
Hin1II	CATG	4 cut(s)	316, 781, 1196, 1514
Hin6I	GCGC	8 cut(s)	194, 238, 243, 298, 386, 747, 823, 1136
HinP1I	GCGC	8 cut(s)	194, 238, 243, 298, 386, 747, 823, 1136
HindIII	AAGCTT	2 cut(s)	26, 665
HpaII	CCGG	6 cut(s)	102, 156, 283, 295, 352, 608
HphI	GGTGA	3 cut(s)	1052, 1215, 1265
Hpy188I	TCNGA	7 cut(s)	52, 97, 109, 178, 326, 463, 540
Hpy99I	CGWCG	3 cut(s)	119, 419, 458
HpyAV	CCTTC	9 cut(s)	400, 499, 589, 802, 905, 976, 1055, 1181, 1546
HpyCH4III	ACNGT	3 cut(s)	950, 1070, 1504
HpyCH4IV	ACGT	3 cut(s)	583, 1029, 1181
HpyCH4V	TGCA	7 cut(s)	220, 675, 839, 853, 1085, 1118, 1211
HpyF3I	CTNAG	3 cut(s)	356, 976, 1214
HpySE526I	ACGT	3 cut(s)	583, 1029, 1181
Hsp92I	GRCGYC	2 cut(s)	117, 298
Hsp92II	CATG	4 cut(s)	316, 781, 1196, 1514
HspAI	GCGC	8 cut(s)	194, 238, 243, 298, 386, 747, 823, 1136
KasI	GGCGCC	1 cut(s)	297
Kpn2I	TCCGGA	2 cut(s)	282, 607
KpnI	GGTACC	1 cut(s)	1545
Kzo9I	GATC	3 cut(s)	469, 604, 630
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	4 cut(s)	143, 774, 914, 1385
Lsp1109I	GCAGC	8 cut(s)	56, 86, 89, 146, 232, 235, 400, 421
LweI	GCATC	2 cut(s)	613, 1123
MaeI	CTAG	2 cut(s)	531, 1241
MaeII	ACGT	3 cut(s)	583, 1029, 1181
MaeIII	GTNAC	5 cut(s)	524, 787, 1064, 1372, 1459
MalI	GATC	3 cut(s)	471, 606, 632
MbiI	CCGCTC	1 cut(s)	1539
MboI	GATC	3 cut(s)	469, 604, 630
MboII	GAAGA	5 cut(s)	191, 484, 1046, 1055, 1268
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	4 cut(s)	57, 312, 445, 919
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	4 cut(s)	477, 658, 731, 1343
MluNI	TGGCCA	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	298
MlyI	GAGTC	5 cut(s)	86, 92, 168, 280, 310
MmeI	TCCRAC	2 cut(s)	120, 1164
Mox20I	TGGCCA	1 cut(s)	371
MroI	TCCGGA	2 cut(s)	282, 607
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	4 cut(s)	752, 827, 1283, 1422
MslI	CAYNNNNRTG	1 cut(s)	1101
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	6 cut(s)	102, 156, 283, 295, 352, 608
MspR9I	CCNGG	5 cut(s)	82, 508, 562, 1100, 1559
MteI	GCGCNGCGC	1 cut(s)	241
MvaI	CCWGG	5 cut(s)	82, 508, 562, 1100, 1559
MvnI	CGCG	2 cut(s)	196, 243
NarI	GGCGCC	1 cut(s)	298
NdeII	GATC	3 cut(s)	469, 604, 630
NlaIII	CATG	4 cut(s)	316, 781, 1196, 1514
NlaIV	GGNNCC	9 cut(s)	106, 145, 299, 350, 451, 606, 1154, 1381, 1543
NmeAIII	GCCGAG	2 cut(s)	282, 652
NmuCI	GTSAC	2 cut(s)	524, 1064
NspI	RCATGY	1 cut(s)	781
PaeI	GCATGC	1 cut(s)	781
PasI	CCCWGGG	1 cut(s)	561
PceI	AGGCCT	1 cut(s)	653
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 420
PfeI	GAWTC	5 cut(s)	364, 380, 458, 556, 1451
PflMI	CCANNNNNTGG	3 cut(s)	704, 771, 1564
PleI	GAGTC	5 cut(s)	86, 92, 167, 280, 310
PluTI	GGCGCC	1 cut(s)	301
PpsI	GAGTC	5 cut(s)	86, 92, 167, 280, 310
PpuMI	RGGWCCY	1 cut(s)	1153
Psp5II	RGGWCCY	1 cut(s)	1153
Psp6I	CCWGG	5 cut(s)	80, 506, 560, 1098, 1557
PspGI	CCWGG	5 cut(s)	80, 506, 560, 1098, 1557
PspN4I	GGNNCC	9 cut(s)	106, 145, 299, 350, 451, 606, 1154, 1381, 1543
PspPI	GGNCC	6 cut(s)	349, 449, 510, 946, 1153, 1555
PspPPI	RGGWCCY	1 cut(s)	1153
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	4 cut(s)	485, 986, 994, 1543
RsaNI	GTAC	4 cut(s)	484, 985, 993, 1542
RseI	CAYNNNNRTG	1 cut(s)	1101
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	752, 827, 1283, 1422
Sau3AI	GATC	3 cut(s)	469, 604, 630
Sau96I	GGNCC	6 cut(s)	349, 449, 510, 946, 1153, 1555
ScaI	AGTACT	1 cut(s)	986
SchI	GAGTC	5 cut(s)	86, 92, 168, 280, 310
ScrFI	CCNGG	5 cut(s)	82, 508, 562, 1100, 1559
SduI	GDGCHC	4 cut(s)	57, 312, 445, 919
SfaNI	GCATC	2 cut(s)	613, 1123
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	299
SinI	GGWCC	4 cut(s)	349, 946, 1153, 1555
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	4 cut(s)	138, 444, 783, 1353
SmoI	CTYRAG	4 cut(s)	138, 444, 783, 1353
SphI	GCATGC	1 cut(s)	781
Sse9I	AATT	4 cut(s)	477, 658, 731, 1343
SseBI	AGGCCT	1 cut(s)	653
SspDI	GGCGCC	1 cut(s)	297
SspMI	CTAG	2 cut(s)	531, 1241
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	5 cut(s)	80, 506, 560, 1098, 1557
StyI	CCWWGG	1 cut(s)	1467
TaaI	ACNGT	3 cut(s)	950, 1070, 1504
TaiI	ACGT	3 cut(s)	586, 1032, 1184
TaqI	TCGA	6 cut(s)	162, 362, 378, 468, 554, 1535
TaqII	GACCGA	2 cut(s)	104, 1530
TasI	AATT	4 cut(s)	477, 658, 731, 1343
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	5 cut(s)	364, 380, 458, 556, 1451
Tru1I	TTAA	4 cut(s)	752, 827, 1283, 1422
Tru9I	TTAA	4 cut(s)	752, 827, 1283, 1422
TscAI	CASTG	3 cut(s)	502, 682, 1252
TseFI	GTSAC	2 cut(s)	524, 1064
TseI	GCWGC	8 cut(s)	44, 74, 77, 134, 220, 223, 388, 434
Tsp45I	GTSAC	2 cut(s)	524, 1064
TspDTI	ATGAA	2 cut(s)	248, 419
TspGWI	ACGGA	1 cut(s)	1148
TspRI	CASTG	3 cut(s)	502, 682, 1252
Van91I	CCANNNNNTGG	3 cut(s)	704, 771, 1564
VpaK11BI	GGWCC	4 cut(s)	349, 946, 1153, 1555
XapI	RAATTY	2 cut(s)	477, 1343
XceI	RCATGY	1 cut(s)	781
XspI	CTAG	2 cut(s)	531, 1241
ZrmI	AGTACT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.