Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

18754751 .. 18758707

Gene Structure 3957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGACCATGGAGGAGGAGGAGGAGAAGCTTCTCTCCACCATCGCCGCTTCCGAGCCAAACGGCGACGCGGCACCGATGACCACCGACTCCGACTCCGACTCCGCCGATCAGGGAGCCGTCGCCTCGGCCGGAGTCGAGTACCAGATATCCGAGGAGCAGAAGCAGTTGCAGGAGCGGCATGAGAGAGCAAAGCAGGAGCTCCTGAGGAAGCGCCGCGCTTCTGCTCTTGCCGTCCCCACCAACGACAATGCCGTCAGGGCTCGTCTCCGGCGCCTAGGCGAGCCGATGACGCTGTTCGGTGAGCGCGAGATGGAGAGGCGCGACCGCCTGAGGATGATTCTGGCCAACCTCGATCCGGCGCAGCAGGAGTCGCTGGTCAAGTCTCATGAGGACGACGAGGCTGCTAATGCCGACGATTCTGACTTCGAGCAAGAAATTGAGTATCCCTTCTTCACCGAAGCGACCAGGCCTAAGGCTTTGCGTGAGGCTAGGGTTCATATTGCGCACTACTCCATGCCACTCGCCGCCTTGCGGCTTCAGCGTGCCAGGAGGAGGGAGGAGGATCCCGATGAGGATATGGATGCTGAGATTAACTGGGCGTTAGGGCAGGCCTCGAATTTGAAGCTCGATTGCAGTGAGATTGGGGATGACAGGCCTCTTTCGGGTTGCTCCTTCTCGCCAGATGGGACATTGCTTGCCACCTGCGCTTTAAGTCCGGTTGCCAAGTTGTGGAACATGCCTCATGTAACTAAGGTTGCCACCTTGAAGGGACACACAGAGCGCTTAACCGATGTCGCATTTTCTCCTGTGCAAAACCACCTCTTGGCTACTGCCTCTGCTGATAGGACTGCGAGGTTGTGGAACAGCGAAGGAGGACACCTGTTGACATTCGGGGGACATTTGGACCGTCTTGCCTGTATTGCCTTCCATCCCTCAGGAAAGTACTTGGGAACAACTAGCTTTGACAAGACTTGGAGACTTTGGGATGTTGAGACCGGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTATATGCCATAGACTTTCACCCAGATGGCTCATTGGTTGCAACTGCTGGATTGGATGCGCTTACTCGTGTTTGGGACCTCCGTAGTGGTAGAAGTATACTTACCTTGGAAGGCCATGTCAAAAAAGTTCTTGCGCTCAGTTTTTCACCAAATGGCTATCATCTAGCCACTGGGGGTGAAGACAACACTTGTAGGATATGGGATTTAAGGAAGAAGAAATCCATATACATTATCCCTGCGCACTCCAATCTCATATCACAGGTCAAATTTGAACCTCAGGAGGGATATTTCTTGGTAACTGGCTCATATGATATGACAGCAAAGATATGGTCATCCCGAGATTTTAAGCCTGTCAGGACGCTCTCTGGACATGAAGCAAAAGTTACTTCTTTGGATGTTTCAGGAGATGGACATCACATTGCTACTGTATCACATGACCGAACCATCAAACTATGGTCAAGTGGTACCACTGAGAAGGACCAGGAAATGGATGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

512

Amino Acids

56.96

Weight (kDa)

5.36

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	85 - 111	6.1e-11	pre-mRNA processing factor 4 (PRP4) like
Beta-prop_WDR3_2nd	PF25172	210 - 332	4.6e-12	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	212 - 268	9.4e-07	Prp19 WD40 domain
EIF3I	PF24805	215 - 295	1.8e-07	EIF3I
WD40_Gbeta	PF25391	216 - 337	4e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	217 - 397	4.6e-43	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	219 - 323	1e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	219 - 336	1e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	219 - 295	5.4e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	222 - 328	2.6e-13	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	223 - 290	2.4e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	223 - 291	2.2e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	232 - 378	1.7e-24	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	251 - 447	1.2e-55	Prp19 WD40 domain
WD40	PF00400	251 - 288	7e-08	WD domain, G-beta repeat
WDR55	PF24796	260 - 391	8.7e-11	WDR55
WD40_WDHD1_1st	PF24817	261 - 336	3.1e-08	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	272 - 372	5.8e-08	MABP1/WDR62 second WD40 domain
Beta-prop_THOC3	PF25174	293 - 334	8.2e-06	THOC3 beta-propeller domain
WD40	PF00400	294 - 329	5.8e-07	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	297 - 377	2.3e-06	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	298 - 497	4.2e-33	G protein beta WD-40 repeat protein
Beta-prop_EML	PF23409	298 - 504	6e-16	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	299 - 497	9.4e-29	CDC20/Fizzy WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	315 - 400	2.6e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	321 - 455	1.4e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	325 - 455	1.3e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	327 - 498	6.8e-37	WDR3 first beta-propeller domain
WDR55	PF24796	336 - 446	1.5e-11	WDR55
EIF3I	PF24805	338 - 425	7.3e-11	EIF3I
Beta-prop_THOC3	PF25174	339 - 439	1.5e-21	THOC3 beta-propeller domain
WD40	PF00400	339 - 371	1.5e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	340 - 502	7.8e-41	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	341 - 413	3.6e-10	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	345 - 424	3.7e-12	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	346 - 505	2.6e-22	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	376 - 413	4.1e-11	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	379 - 503	2.4e-13	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	380 - 454	1.1e-10	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	381 - 503	4.2e-11	MABP1/WDR62 first WD40 domain
Beta-prop_EIPR1	PF23609	384 - 455	3.1e-06	EIPR1 beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	388 - 499	3.4e-08	MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	399 - 484	4.6e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	402 - 498	1.7e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	420 - 508	4.8e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	423 - 499	2.9e-14	WDR3 second beta-propeller domain
EIF3I	PF24805	425 - 504	8.4e-09	EIF3I
WD40_Prp19	PF24814	430 - 498	2.1e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	433 - 506	4.4e-10	WDHD1 first WD40 domain
WD40	PF00400	461 - 498	1.8e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc16I	TGCGCA	2 cut(s)	504, 1275
Acc36I	ACCTGC	1 cut(s)	710
Acc65I	GGTACC	1 cut(s)	1499
AccB1I	GGYRCC	3 cut(s)	70, 270, 1499
AccB7I	CCANNNNNTGG	3 cut(s)	729, 823, 1522
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	1132
AccII	CGCG	4 cut(s)	68, 216, 306, 321
AciI	CCGC	8 cut(s)	45, 68, 102, 175, 214, 325, 525, 532
AclWI	GGATC	3 cut(s)	347, 557, 570
AcoI	YGGCCR	2 cut(s)	126, 342
AcsI	RAATTY	2 cut(s)	616, 1301
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	271
AfaI	GTAC	3 cut(s)	140, 944, 1501
AfeI	AGCGCT	1 cut(s)	782
AfiI	CCNNNNNNNGG	8 cut(s)	355, 531, 552, 662, 729, 823, 1316, 1522
AgeI	ACCGGT	1 cut(s)	995
AgsI	TTSAA	4 cut(s)	622, 766, 1016, 1307
AjnI	CCWGG	3 cut(s)	464, 545, 1515
AluBI	AGCT	4 cut(s)	28, 199, 625, 960
AluI	AGCT	4 cut(s)	28, 199, 625, 960
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	4 cut(s)	269, 387, 970, 986
AlwI	GGATC	3 cut(s)	347, 557, 570
Ama87I	CYCGRG	1 cut(s)	1371
Aor51HI	AGCGCT	1 cut(s)	782
AoxI	GGCC	6 cut(s)	126, 342, 467, 609, 653, 1147
ApeKI	GCWGC	2 cut(s)	361, 401
ApoI	RAATTY	2 cut(s)	616, 1301
ArsI	GACNNNNNNTTYG	2 cut(s)	1349, 1381
AsiGI	ACCGGT	1 cut(s)	995
Asp718I	GGTACC	1 cut(s)	1499
AspA2I	CCTAGG	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	904, 1111, 1513
AsuHPI	GGTGA	6 cut(s)	311, 445, 1010, 1046, 1173, 1223
AvaI	CYCGRG	1 cut(s)	1371
AvaII	GGWCC	3 cut(s)	904, 1111, 1513
AvrII	CCTAGG	1 cut(s)	274
AxyI	CCTNAGG	5 cut(s)	203, 329, 471, 934, 1311
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	3 cut(s)	70, 270, 1499
BanII	GRGCYC	2 cut(s)	201, 262
BarI	GAAGNNNNNNTAC	4 cut(s)	434, 466, 1120, 1152
BauI	CACGAG	1 cut(s)	1101
BbsI	GAAGAC	1 cut(s)	1221
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	373, 388
BccI	CCATC	7 cut(s)	47, 304, 677, 936, 1055, 1436, 1487
BceAI	ACGGC	4 cut(s)	76, 101, 215, 236
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	3 cut(s)	466, 547, 1517
BciVI	GTATCC	1 cut(s)	453
BcoDI	GTCTC	4 cut(s)	269, 387, 970, 986
BfaI	CTAG	4 cut(s)	275, 489, 957, 1199
BfoI	RGCGCY	3 cut(s)	214, 274, 784
BfuAI	ACCTGC	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	8 cut(s)	45, 69, 176, 214, 362, 402, 525, 533
BlnI	CCTAGG	1 cut(s)	274
BlsI	GCNGC	8 cut(s)	46, 70, 177, 215, 363, 403, 526, 534
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	3 cut(s)	466, 547, 1517
Bme18I	GGWCC	3 cut(s)	904, 1111, 1513
BmeT110I	CYCGRG	1 cut(s)	1371
BmgT120I	GGNCC	3 cut(s)	904, 1111, 1513
BmiI	GGNNCC	6 cut(s)	72, 115, 272, 564, 1112, 1501
BmrFI	CCNGG	3 cut(s)	466, 547, 1517
BmrI	ACTGGG	2 cut(s)	604, 1215
BmsI	GCATC	2 cut(s)	571, 1081
BmuI	ACTGGG	2 cut(s)	604, 1215
BpiI	GAAGAC	1 cut(s)	1221
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaHI	GRCGYC	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	5 cut(s)	6, 123, 150, 274, 1140
BsaWI	WCCGGW	2 cut(s)	715, 995
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 83, 107, 113
Bsc4I	CCNNNNNNNGG	8 cut(s)	355, 531, 552, 662, 729, 823, 1316, 1522
Bse118I	RCCGGY	1 cut(s)	995
Bse1I	ACTGG	3 cut(s)	599, 1210, 1339
Bse21I	CCTNAGG	5 cut(s)	203, 329, 471, 934, 1311
Bse3DI	GCAATG	2 cut(s)	689, 1452
Bse8I	GATNNNNATC	1 cut(s)	1446
BseBI	CCWGG	3 cut(s)	466, 547, 1517
BseDI	CCNNGG	5 cut(s)	6, 123, 150, 274, 1140
BseGI	GGATG	9 cut(s)	339, 586, 652, 928, 991, 1096, 1367, 1435, 1531
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	8 cut(s)	355, 531, 552, 662, 729, 823, 1316, 1522
BseMI	GCAATG	2 cut(s)	689, 1452
BseMII	CTCAG	7 cut(s)	194, 320, 576, 948, 1186, 1325, 1497
BseNI	ACTGG	3 cut(s)	599, 1210, 1339
BseRI	GAGGAG	7 cut(s)	26, 29, 32, 35, 167, 565, 572
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	373, 388
Bsh1236I	CGCG	4 cut(s)	68, 216, 306, 321
Bsh1285I	CGRYCG	2 cut(s)	129, 325
BshFI	GGCC	6 cut(s)	128, 344, 469, 611, 655, 1149
BshNI	GGYRCC	3 cut(s)	70, 270, 1499
BshTI	ACCGGT	1 cut(s)	995
BsiEI	CGRYCG	2 cut(s)	129, 325
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	1371
BsiSI	CCGG	5 cut(s)	129, 268, 356, 716, 996
BslFI	GGGAC	5 cut(s)	218, 700, 783, 909, 1124
BslI	CCNNNNNNNGG	8 cut(s)	355, 531, 552, 662, 729, 823, 1316, 1522
BsmAI	GTCTC	4 cut(s)	269, 387, 970, 986
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	5 cut(s)	218, 700, 783, 909, 1124
BsnI	GGCC	6 cut(s)	128, 344, 469, 611, 655, 1149
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	1371
Bsp1286I	GDGCHC	2 cut(s)	201, 262
Bsp143I	GATC	3 cut(s)	106, 352, 562
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	8 cut(s)	45, 68, 102, 175, 214, 325, 525, 532
BspANI	GGCC	6 cut(s)	128, 344, 469, 611, 655, 1149
BspCNI	CTCAG	7 cut(s)	195, 321, 577, 947, 1185, 1324, 1498
BspFNI	CGCG	4 cut(s)	68, 216, 306, 321
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	6 cut(s)	72, 115, 272, 564, 1112, 1501
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	347, 557, 570
BspT107I	GGYRCC	3 cut(s)	70, 270, 1499
BspTNI	GGTCTC	1 cut(s)	986
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	689, 1452
BsrFI	RCCGGY	1 cut(s)	995
BsrI	ACTGG	3 cut(s)	599, 1210, 1339
BssAI	RCCGGY	1 cut(s)	995
BssECI	CCNNGG	5 cut(s)	6, 123, 150, 274, 1140
BssMI	GATC	3 cut(s)	106, 352, 562
BssNAI	GTATAC	1 cut(s)	1133
BssNI	GRCGYC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	1101
BssT1I	CCWWGG	3 cut(s)	6, 274, 1140
Bst1107I	GTATAC	1 cut(s)	1133
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	3 cut(s)	466, 547, 1517
Bst4CI	ACNGT	3 cut(s)	908, 1028, 1462
Bst6I	CTCTTC	1 cut(s)	996
BstACI	GRCGYC	1 cut(s)	271
BstC8I	GCNNGC	4 cut(s)	281, 543, 609, 696
BstDEI	CTNAG	9 cut(s)	203, 329, 471, 585, 750, 934, 1172, 1311, 1506
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	9 cut(s)	339, 586, 652, 928, 991, 1096, 1367, 1435, 1531
BstFNI	CGCG	4 cut(s)	68, 216, 306, 321
BstH2I	RGCGCY	3 cut(s)	214, 274, 784
BstKTI	GATC	3 cut(s)	109, 355, 565
BstMAI	GTCTC	4 cut(s)	269, 387, 970, 986
BstMBI	GATC	3 cut(s)	106, 352, 562
BstMCI	CGRYCG	2 cut(s)	129, 325
BstMWI	GCNNNNNNNGC	8 cut(s)	175, 257, 289, 370, 407, 538, 704, 920
BstNI	CCWGG	3 cut(s)	466, 547, 1517
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	3 cut(s)	464, 545, 1515
BstUI	CGCG	4 cut(s)	68, 216, 306, 321
BstV1I	GCAGC	2 cut(s)	373, 388
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZ17I	GTATAC	1 cut(s)	1133
BstZI	CGGCCG	1 cut(s)	126
Bsu36I	CCTNAGG	5 cut(s)	203, 329, 471, 934, 1311
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	6 cut(s)	128, 344, 469, 611, 655, 1149
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	9 cut(s)	339, 586, 652, 928, 991, 1096, 1367, 1435, 1531
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	640, 1203, 1503
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	4 cut(s)	281, 543, 609, 696
CciI	TCATGA	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	995
Cfr13I	GGNCC	3 cut(s)	904, 1111, 1513
CseI	GACGC	3 cut(s)	74, 298, 1402
Csp6I	GTAC	3 cut(s)	139, 943, 1500
CspAI	ACCGGT	1 cut(s)	995
CviAII	CATG	9 cut(s)	7, 179, 386, 514, 736, 743, 1151, 1406, 1469
CviQI	GTAC	3 cut(s)	139, 943, 1500
DdeI	CTNAG	9 cut(s)	203, 329, 471, 585, 750, 934, 1172, 1311, 1506
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	3 cut(s)	108, 354, 564
DpnII	GATC	3 cut(s)	106, 352, 562
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	126, 342
EagI	CGGCCG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	3 cut(s)	6, 274, 1140
Eco147I	AGGCCT	3 cut(s)	469, 611, 655
Eco24I	GRGCYC	2 cut(s)	201, 262
Eco31I	GGTCTC	1 cut(s)	986
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	3 cut(s)	904, 1111, 1513
Eco47III	AGCGCT	1 cut(s)	782
Eco52I	CGGCCG	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	521
Eco81I	CCTNAGG	5 cut(s)	203, 329, 471, 934, 1311
Eco88I	CYCGRG	1 cut(s)	1371
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	1111
EcoRII	CCWGG	3 cut(s)	464, 545, 1515
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	3 cut(s)	6, 274, 1140
EcoT38I	GRGCYC	2 cut(s)	201, 262
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
ErhI	CCWWGG	3 cut(s)	6, 274, 1140
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	9 cut(s)	10, 182, 389, 517, 739, 746, 1154, 1409, 1472
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	5 cut(s)	218, 700, 783, 909, 1124
FatI	CATG	9 cut(s)	6, 178, 385, 513, 735, 742, 1150, 1405, 1468
FauNDI	CATATG	1 cut(s)	1342
FblI	GTMKAC	1 cut(s)	1132
Fnu4HI	GCNGC	8 cut(s)	45, 69, 176, 214, 362, 402, 525, 533
FokI	GGATG	8 cut(s)	346, 593, 659, 915, 998, 1103, 1354, 1442
FriOI	GRGCYC	2 cut(s)	201, 262
Fsp4HI	GCNGC	8 cut(s)	45, 69, 176, 214, 362, 402, 525, 533
FspBI	CTAG	4 cut(s)	275, 489, 957, 1199
FspI	TGCGCA	2 cut(s)	504, 1275
GluI	GCNGC	8 cut(s)	45, 69, 176, 214, 362, 402, 525, 533
HaeII	RGCGCY	3 cut(s)	214, 274, 784
HaeIII	GGCC	6 cut(s)	128, 344, 469, 611, 655, 1149
HapII	CCGG	5 cut(s)	129, 268, 356, 716, 996
HgaI	GACGC	3 cut(s)	74, 298, 1402
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	9 cut(s)	10, 182, 389, 517, 739, 746, 1154, 1409, 1472
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	7 cut(s)	86, 92, 98, 132, 337, 368, 416
HpaII	CCGG	5 cut(s)	129, 268, 356, 716, 996
HphI	GGTGA	6 cut(s)	311, 445, 1010, 1046, 1173, 1223
Hpy166II	GTNNAC	2 cut(s)	885, 1133
Hpy188I	TCNGA	5 cut(s)	52, 91, 97, 151, 421
Hpy8I	GTNNAC	2 cut(s)	885, 1133
Hpy99I	CGWCG	4 cut(s)	68, 122, 398, 416
HpyAV	CCTTC	8 cut(s)	457, 682, 760, 863, 934, 1013, 1139, 1504
HpyCH4III	ACNGT	3 cut(s)	908, 1028, 1462
HpyCH4V	TGCA	4 cut(s)	169, 633, 811, 1076
HpyF10VI	GCNNNNNNNGC	8 cut(s)	175, 257, 289, 370, 407, 538, 704, 920
HpyF3I	CTNAG	9 cut(s)	203, 329, 471, 585, 750, 934, 1172, 1311, 1506
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	9 cut(s)	10, 182, 389, 517, 739, 746, 1154, 1409, 1472
KasI	GGCGCC	1 cut(s)	270
KpnI	GGTACC	1 cut(s)	1503
Kzo9I	GATC	3 cut(s)	106, 352, 562
LmnI	GCTCC	6 cut(s)	113, 154, 172, 196, 204, 674
Lsp1109I	GCAGC	2 cut(s)	373, 388
LweI	GCATC	2 cut(s)	571, 1081
MaeI	CTAG	4 cut(s)	275, 489, 957, 1199
MaeIII	GTNAC	4 cut(s)	745, 1022, 1330, 1417
MalI	GATC	3 cut(s)	108, 354, 564
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	3 cut(s)	106, 352, 562
MboII	GAAGA	6 cut(s)	442, 1004, 1013, 1226, 1258, 1261
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	201, 262
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	435, 616, 1301
MluNI	TGGCCA	1 cut(s)	344
Mly113I	GGCGCC	1 cut(s)	271
MlyI	GAGTC	5 cut(s)	80, 86, 92, 141, 377
MmeI	TCCRAC	2 cut(s)	114, 120
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	6 cut(s)	591, 710, 785, 1241, 1380, 1534
MslI	CAYNNNNRTG	1 cut(s)	1059
Msp20I	TGGCCA	1 cut(s)	344
MspI	CCGG	5 cut(s)	129, 268, 356, 716, 996
MspR9I	CCNGG	3 cut(s)	466, 547, 1517
MteI	GCGCNGCGC	1 cut(s)	214
MvaI	CCWGG	3 cut(s)	466, 547, 1517
MvnI	CGCG	4 cut(s)	68, 216, 306, 321
MwoI	GCNNNNNNNGC	8 cut(s)	175, 257, 289, 370, 407, 538, 704, 920
NarI	GGCGCC	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	3 cut(s)	106, 352, 562
NlaIII	CATG	9 cut(s)	10, 182, 389, 517, 739, 746, 1154, 1409, 1472
NlaIV	GGNNCC	6 cut(s)	72, 115, 272, 564, 1112, 1501
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	1022
NsbI	TGCGCA	2 cut(s)	504, 1275
NspI	RCATGY	1 cut(s)	739
PagI	TCATGA	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	710
PceI	AGGCCT	3 cut(s)	469, 611, 655
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 249, 303
PfeI	GAWTC	2 cut(s)	337, 416
PflMI	CCANNNNNTGG	3 cut(s)	729, 823, 1522
PinAI	ACCGGT	1 cut(s)	995
PkrI	GCNGC	8 cut(s)	46, 70, 177, 215, 363, 403, 526, 534
PleI	GAGTC	5 cut(s)	80, 86, 92, 140, 376
PluTI	GGCGCC	1 cut(s)	274
PpsI	GAGTC	5 cut(s)	80, 86, 92, 140, 376
PpuMI	RGGWCCY	1 cut(s)	1111
Psp124BI	GAGCTC	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	1111
Psp6I	CCWGG	3 cut(s)	464, 545, 1515
PspGI	CCWGG	3 cut(s)	464, 545, 1515
PspN4I	GGNNCC	6 cut(s)	72, 115, 272, 564, 1112, 1501
PspPI	GGNCC	3 cut(s)	904, 1111, 1513
PspPPI	RGGWCCY	1 cut(s)	1111
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	3 cut(s)	140, 944, 1501
RsaNI	GTAC	3 cut(s)	139, 943, 1500
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	6 cut(s)	591, 710, 785, 1241, 1380, 1534
SatI	GCNGC	8 cut(s)	45, 69, 176, 214, 362, 402, 525, 533
Sau3AI	GATC	3 cut(s)	106, 352, 562
Sau96I	GGNCC	3 cut(s)	904, 1111, 1513
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	5 cut(s)	80, 86, 92, 141, 377
ScrFI	CCNGG	3 cut(s)	466, 547, 1517
SduI	GDGCHC	2 cut(s)	201, 262
SfaNI	GCATC	2 cut(s)	571, 1081
SfoI	GGCGCC	1 cut(s)	272
SinI	GGWCC	3 cut(s)	904, 1111, 1513
SmiMI	CAYNNNNRTG	1 cut(s)	1059
Sse9I	AATT	3 cut(s)	435, 616, 1301
SseBI	AGGCCT	3 cut(s)	469, 611, 655
SsiI	CCGC	8 cut(s)	45, 68, 102, 175, 214, 325, 525, 532
SspDI	GGCGCC	1 cut(s)	270
SspMI	CTAG	4 cut(s)	275, 489, 957, 1199
SstI	GAGCTC	1 cut(s)	201
StuI	AGGCCT	3 cut(s)	469, 611, 655
StyD4I	CCNGG	3 cut(s)	464, 545, 1515
StyI	CCWWGG	3 cut(s)	6, 274, 1140
TaaI	ACNGT	3 cut(s)	908, 1028, 1462
TaqI	TCGA	5 cut(s)	135, 351, 426, 614, 627
TaqII	GACCGA	1 cut(s)	1488
TasI	AATT	3 cut(s)	435, 616, 1301
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	6 cut(s)	47, 71, 178, 216, 527, 535
TfiI	GAWTC	2 cut(s)	337, 416
Tru1I	TTAA	6 cut(s)	591, 710, 785, 1241, 1380, 1534
Tru9I	TTAA	6 cut(s)	591, 710, 785, 1241, 1380, 1534
TscAI	CASTG	3 cut(s)	640, 1210, 1510
TseFI	GTSAC	1 cut(s)	1022
TseI	GCWGC	2 cut(s)	361, 401
Tsp45I	GTSAC	1 cut(s)	1022
TspDTI	ATGAA	2 cut(s)	485, 1422
TspGWI	ACGGA	1 cut(s)	1106
TspRI	CASTG	3 cut(s)	640, 1210, 1510
Van91I	CCANNNNNTGG	3 cut(s)	729, 823, 1522
VpaK11BI	GGWCC	3 cut(s)	904, 1111, 1513
XapI	RAATTY	2 cut(s)	616, 1301
XceI	RCATGY	1 cut(s)	739
XmaJI	CCTAGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	1132
XspI	CTAG	4 cut(s)	275, 489, 957, 1199
ZrmI	AGTACT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.