Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Forward (+)

2426176 .. 2427355

Gene Structure 1180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G06200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTACAAGGATTCCATTCACAGAATCACAATGGGAAGAACTTGAAAACCAAGCTCTTGTGTTCAAGTACTTAGCTGCAAATATGCCTGTTCCACCTCATCTTCTCTTCCTCATCAAAAGACCCTTTCTCTTCTCTTCTTCTTCTTCTTCATCTTCTTCTTCAAGCTTCTTCTCTCCCACTCTTTCTCCACACTTTGGGTGGAATGTGTATGAGATGGGAATGGGAAGAAAGATAGATGCAGAGCCAGGAAGATGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCTAAAGAAGCTTACCCTGACTCTAAGTACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCTTCCTCAAGAAAGCCTCCTCCTACTCAATTCACTCCAAATCTCTTTCTCGACTCTTCTTCCAGAAGAAGAAGAAGTGGATACATGGATGATTTCTTCTCCATAGAACCTTCCGGGTCAATCAAAAGCTGCTCTGGCTCAGCAATGGAAGATAATGATGATGGCTCATGTAGAGGCATCAACAACGAGGAGAAGCAGCCGGATCGACATTGCTTCATCCTTGGTACTGACTTGAGGACACGTGAGAGGCCATTGATGTTAGAGGAGAAGCTGAAACAAAGAGATCATGATAATGAAGAAGAGCAAGGAAGCAAGAGGTTTTATAGGTTTCTTGATGAATGGCCTTCTTCTAAATCTTCTGTTTCTACTTCACTCTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

244

Amino Acids

28.21

Weight (kDa)

8.87

Isoelectric Point (pI)

75.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	9 - 50	6.3e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AclWI	GGATC	1 cut(s)	561
AcvI	CACGTG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	71, 317, 577
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	47, 67, 165
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	338, 370
AluBI	AGCT	6 cut(s)	56, 77, 168, 299, 480, 622
AluI	AGCT	6 cut(s)	56, 77, 168, 299, 480, 622
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	2 cut(s)	599, 692
ApeKI	GCWGC	3 cut(s)	77, 480, 547
AsuC2I	CCSGG	1 cut(s)	466
BbrPI	CACGTG	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	64, 467, 559
BccI	CCATC	3 cut(s)	211, 263, 506
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	425
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	78, 481, 548
BlpI	GCTNAGC	1 cut(s)	490
BlsI	GCNGC	3 cut(s)	79, 482, 549
BmcAI	AGTACT	2 cut(s)	71, 317
Bme1390I	CCNGG	2 cut(s)	249, 466
BmrFI	CCNGG	2 cut(s)	249, 466
BmsI	GCATC	3 cut(s)	229, 275, 537
Bpu1102I	GCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	2 cut(s)	343, 604
BpuMI	CCSGG	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse3DI	GCAATG	2 cut(s)	501, 559
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	445, 567
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	2 cut(s)	501, 559
BseMII	CTCAG	1 cut(s)	504
BseRI	GAGGAG	3 cut(s)	360, 554, 629
BseXI	GCAGC	3 cut(s)	64, 467, 559
BshFI	GGCC	2 cut(s)	601, 694
BsiSI	CCGG	2 cut(s)	465, 551
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	601, 694
Bsp143I	GATC	2 cut(s)	553, 634
Bsp1720I	GCTNAGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	601, 694
BspCNI	CTCAG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	637
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	645
BsrDI	GCAATG	2 cut(s)	501, 559
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	553, 634
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	320, 350
Bst6I	CTCTTC	6 cut(s)	113, 137, 142, 412, 645, 731
BstBAI	YACGTR	1 cut(s)	593
BstDEI	CTNAG	3 cut(s)	73, 312, 490
BstF5I	GGATG	2 cut(s)	445, 567
BstKTI	GATC	2 cut(s)	556, 637
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	553, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	247, 464
BstV1I	GCAGC	3 cut(s)	64, 467, 559
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	601, 694
BtsCI	GGATG	2 cut(s)	445, 567
CciI	TCATGA	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	70, 316, 576
CviAII	CATG	3 cut(s)	436, 519, 638
CviQI	GTAC	3 cut(s)	70, 316, 576
DdeI	CTNAG	3 cut(s)	73, 312, 490
DpnI	GATC	2 cut(s)	555, 636
DpnII	GATC	2 cut(s)	553, 634
Eam1104I	CTCTTC	6 cut(s)	113, 137, 142, 412, 645, 731
EarI	CTCTTC	6 cut(s)	113, 137, 142, 412, 645, 731
Eco130I	CCWWGG	1 cut(s)	571
Eco72I	CACGTG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	571
EcoT22I	ATGCAT	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	3 cut(s)	439, 522, 641
FatI	CATG	3 cut(s)	435, 518, 637
FauNDI	CATATG	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	78, 481, 548
FokI	GGATG	2 cut(s)	452, 554
Fsp4HI	GCNGC	3 cut(s)	78, 481, 548
GluI	GCNGC	3 cut(s)	78, 481, 548
HaeIII	GGCC	2 cut(s)	601, 694
HapII	CCGG	2 cut(s)	465, 551
Hin1II	CATG	3 cut(s)	439, 522, 641
HindIII	AAGCTT	2 cut(s)	166, 297
HinfI	GANTC	4 cut(s)	13, 26, 308, 404
HpaII	CCGG	2 cut(s)	465, 551
Hpy188III	TCNNGA	5 cut(s)	360, 401, 414, 638, 683
HpyAV	CCTTC	2 cut(s)	471, 705
HpyCH4III	ACNGT	2 cut(s)	320, 350
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	3 cut(s)	80, 242, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	3 cut(s)	73, 312, 490
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	3 cut(s)	439, 522, 641
Kzo9I	GATC	2 cut(s)	553, 634
LguI	GCTCTTC	1 cut(s)	645
LpnPI	CCDG	8 cut(s)	102, 234, 261, 318, 427, 471, 478, 564
Lsp1109I	GCAGC	3 cut(s)	64, 467, 559
LweI	GCATC	3 cut(s)	229, 275, 537
MaeII	ACGT	1 cut(s)	592
MalI	GATC	2 cut(s)	555, 636
MboI	GATC	2 cut(s)	553, 634
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	302, 398
Mph1103I	ATGCAT	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	2 cut(s)	465, 551
MspR9I	CCNGG	2 cut(s)	249, 466
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	2 cut(s)	553, 634
NlaIII	CATG	3 cut(s)	439, 522, 641
NsiI	ATGCAT	1 cut(s)	336
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	13, 26
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	79, 482, 549
PleI	GAGTC	2 cut(s)	302, 398
PmaCI	CACGTG	1 cut(s)	593
PmlI	CACGTG	1 cut(s)	593
PpsI	GAGTC	2 cut(s)	302, 398
Ppu21I	YACGTR	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	247
RsaI	GTAC	3 cut(s)	71, 317, 577
RsaNI	GTAC	3 cut(s)	70, 316, 576
RseI	CAYNNNNRTG	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	645
SatI	GCNGC	3 cut(s)	78, 481, 548
Sau3AI	GATC	2 cut(s)	553, 634
ScaI	AGTACT	2 cut(s)	71, 317
SchI	GAGTC	2 cut(s)	302, 398
ScrFI	CCNGG	2 cut(s)	249, 466
SfaNI	GCATC	3 cut(s)	229, 275, 537
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	2 cut(s)	358, 583
SmoI	CTYRAG	2 cut(s)	358, 583
Sse9I	AATT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	247, 464
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	320, 350
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	402, 556
TasI	AATT	1 cut(s)	380
TatI	WGTACW	2 cut(s)	69, 315
TfiI	GAWTC	2 cut(s)	13, 26
TseI	GCWGC	3 cut(s)	77, 480, 547
TspDTI	ATGAA	5 cut(s)	141, 556, 660, 702, 718
Van91I	CCANNNNNTGG	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
ZrmI	AGTACT	2 cut(s)	71, 317
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.