Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Reverse (-)

6988585 .. 6989541

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1088700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACGATTCCTGGCAGTTCACACCGCTCACAATTAGTACTTCTTCGTCTTCGAAACAGAGAAGCTGCTCTGCTTTTCAAAGTGATCAGCAGCTTCAGAGCATCAAACATCAAAAGCAAGATCATCATCAGCAGCAGCAGCATTACTATGCTTTGGACAGAAACGAAGGATCCCAGAAGACCATTCATCGATTCTTCGACGAATGGCCCCCGAAAGATAAAGATTCATGGCTCGATTTGGATGATAAATCATCAAACAGCGGATCGGTTTCTACAACCAGGCTCTCAATCTCCATCCCTACTTCTGCTCATGACTTCCCCATCTTCACCTCAAGACATCATAATAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

118

Amino Acids

13.58

Weight (kDa)

6.2

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 261
AclWI	GGATC	3 cut(s)	165, 178, 271
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	11, 278
AluBI	AGCT	2 cut(s)	66, 94
AluI	AGCT	2 cut(s)	66, 94
AlwI	GGATC	3 cut(s)	165, 178, 271
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	5 cut(s)	66, 91, 133, 136, 139
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	170
BbsI	GAAGAC	2 cut(s)	42, 185
BbvI	GCAGC	5 cut(s)	53, 103, 145, 148, 151
BccI	CCATC	2 cut(s)	302, 329
BciT130I	CCWGG	2 cut(s)	13, 280
BclI	TGATCA	1 cut(s)	85
BisI	GCNGC	5 cut(s)	67, 92, 134, 137, 140
BlsI	GCNGC	5 cut(s)	68, 93, 135, 138, 141
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	13, 280
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	172, 209
BmrFI	CCNGG	2 cut(s)	13, 280
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	2 cut(s)	42, 185
Bpu14I	TTCGAA	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	13, 280
BseCI	ATCGAT	1 cut(s)	190
BseGI	GGATG	2 cut(s)	247, 294
BseJI	GATNNNNATC	1 cut(s)	126
BseXI	GCAGC	5 cut(s)	53, 103, 145, 148, 151
BshFI	GGCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	190
BsnI	GGCC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	85, 121, 170, 263
BspACI	CCGC	2 cut(s)	26, 261
BspANI	GGCC	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	172, 209
BspPI	GGATC	3 cut(s)	165, 178, 271
BspT104I	TTCGAA	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	28
BssMI	GATC	4 cut(s)	85, 121, 170, 263
Bst2UI	CCWGG	2 cut(s)	13, 280
BstBI	TTCGAA	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	247, 294
BstKTI	GATC	4 cut(s)	88, 124, 173, 266
BstMBI	GATC	4 cut(s)	85, 121, 170, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	13, 280
BstSCI	CCNGG	2 cut(s)	11, 278
BstV1I	GCAGC	5 cut(s)	53, 103, 145, 148, 151
BstV2I	GAAGAC	2 cut(s)	42, 185
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	247, 294
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	228, 311
CviJI	RGCY	5 cut(s)	66, 94, 208, 232, 283
CviKI_1	RGCY	5 cut(s)	66, 94, 208, 232, 283
CviQI	GTAC	1 cut(s)	39
DpnI	GATC	4 cut(s)	87, 123, 172, 265
DpnII	GATC	4 cut(s)	85, 121, 170, 263
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	11, 278
FaeI	CATG	2 cut(s)	231, 314
FaiI	YATR	4 cut(s)	150, 229, 312, 342
FatI	CATG	2 cut(s)	227, 310
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	5 cut(s)	67, 92, 134, 137, 140
FokI	GGATG	2 cut(s)	254, 281
Fsp4HI	GCNGC	5 cut(s)	67, 92, 134, 137, 140
GluI	GCNGC	5 cut(s)	67, 92, 134, 137, 140
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	231, 314
HinfI	GANTC	3 cut(s)	8, 192, 224
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	2 cut(s)	311, 333
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	231, 314
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	85, 121, 170, 263
LpnPI	CCDG	4 cut(s)	25, 188, 265, 292
Lsp1109I	GCAGC	5 cut(s)	53, 103, 145, 148, 151
LweI	GCATC	1 cut(s)	111
MalI	GATC	4 cut(s)	87, 123, 172, 265
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	4 cut(s)	85, 121, 170, 263
MboII	GAAGA	5 cut(s)	36, 42, 187, 190, 316
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	1 cut(s)	340
MslI	CAYNNNNRTG	2 cut(s)	147, 345
MspA1I	CMGCKG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	13, 280
MvaI	CCWGG	2 cut(s)	13, 280
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	4 cut(s)	85, 121, 170, 263
NlaIII	CATG	2 cut(s)	231, 314
NlaIV	GGNNCC	2 cut(s)	172, 209
NspV	TTCGAA	1 cut(s)	53
PagI	TCATGA	1 cut(s)	310
PfeI	GAWTC	3 cut(s)	8, 192, 224
PkrI	GCNGC	5 cut(s)	68, 93, 135, 138, 141
Psp6I	CCWGG	2 cut(s)	11, 278
PspGI	CCWGG	2 cut(s)	11, 278
PspN4I	GGNNCC	2 cut(s)	172, 209
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	147, 345
SatI	GCNGC	5 cut(s)	67, 92, 134, 137, 140
Sau3AI	GATC	4 cut(s)	85, 121, 170, 263
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	13, 280
SetI	ASST	3 cut(s)	68, 96, 332
SfaNI	GCATC	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	147, 345
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	2 cut(s)	26, 261
StyD4I	CCNGG	2 cut(s)	11, 278
TaqI	TCGA	4 cut(s)	53, 190, 198, 234
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	8, 192, 224
TseI	GCWGC	5 cut(s)	66, 91, 133, 136, 139
TspDTI	ATGAA	2 cut(s)	176, 216
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.