Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Reverse (-)

4973472 .. 4975168

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAATAGCAATGGAAGAAACAGCAGGTTTCCTTTCACTCCATCTCAGTGGCAAGAGCTTGAGCACCAAGCTCTTATCTACAAGTACATGGTTTCTGGAATCTCCATCCCTCCTGATCTCCTCTTCTCCCTCAAAAGAAGCACCTACAACTTGGACTCCCCTCTCCCTCCAAAGCTCTTCTCTCACCACCCTCCTCAAATTGGATGGAACTGTTTCCAGATGGGATTAGGGAGAAAAATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAAGAGGCGTTTCCGGATTCGAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAACTTCTCAAAACATCACAAATTTCAACAACAAACTCATCAAACACTTCAACAATTACCACCAGAATCAACACTTCTTCTGATTCTCCTAGTCCTGCAGCCTTTCATTCCCTTTCATCATCACTCTCTTCTCTCTCCTCCTCTGATTCCCACGCTTTCCCTTTCCTCTATCATCATAACTCACCTTCTCCAAGGCCTACTGGAATCGGATTCCCACATCAAGAGAGAAGCACTACTTCCTTGTTTTTGGACTCTGGTTCTTATCCCCAACCCAGCTCAGATTACAGGTATGCTTATGGGATGAAGGAGGAGGTGGATGAGCATGCATTCTTCTCAGAGCCTTCAGGCACAGTGAGAGGCTTCTCTGGTTCTTCATCCATGGACGATTCCTGGCAGTTCACACCGCTAACAATTAGTACTTCTTCGTCTTCAAAACAGAGAAGCTGCTCTGCTTTTCAAAGTGATCAGCAGCTTCAGAGCATCAAACATCAAAAGCAAGATCATCAGCAGCAGCAGCATTACTATGCTTTGGACAGAAACGAAGGATCCCAGAAGACCATTCATCGATTCTTCGACGAATGGCCCCCGAAAGATAAAGATTCATGGCTTGATTTGGATGATAAATCATCGAACGATCGGTTTCCACCACCAGGCTCTCAATCTCCATCCCTACTTCTGCTCATGACTTCCCCATCTTCACCTCAAGACATCATAATAGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

365

Amino Acids

41.2

Weight (kDa)

8.69

Isoelectric Point (pI)

71.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	11 - 44	1.7e-14	QLQ
WRC	PF08879	82 - 124	8.6e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	1 cut(s)	773
AclWI	GGATC	2 cut(s)	909, 922
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	696, 827
AfaI	GTAC	3 cut(s)	86, 320, 787
AfiI	CCNNNNNNNGG	3 cut(s)	200, 251, 1019
AgsI	TTSAA	5 cut(s)	357, 396, 420, 801, 827
AjnI	CCWGG	3 cut(s)	250, 758, 1018
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	7 cut(s)	58, 71, 175, 645, 813, 841, 1092
AluI	AGCT	7 cut(s)	58, 71, 175, 645, 813, 841, 1092
Alw21I	GWGCWC	2 cut(s)	66, 293
AlwI	GGATC	2 cut(s)	909, 922
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	563, 950
ApeKI	GCWGC	6 cut(s)	467, 813, 838, 877, 880, 883
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	951
AsuHPI	GGTGA	3 cut(s)	176, 543, 1059
AsuII	TTCGAA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	789, 929
Bbv12I	GWGCWC	2 cut(s)	66, 293
BbvI	GCAGC	6 cut(s)	479, 800, 850, 889, 892, 895
BccI	CCATC	7 cut(s)	49, 113, 198, 214, 266, 1042, 1069
BciT130I	CCWGG	3 cut(s)	252, 760, 1020
BclI	TGATCA	1 cut(s)	832
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	6 cut(s)	468, 814, 839, 878, 881, 884
BlsI	GCNGC	6 cut(s)	469, 815, 840, 879, 882, 885
BmcAI	AGTACT	2 cut(s)	320, 787
Bme1390I	CCNGG	3 cut(s)	252, 760, 1020
BmgT120I	GGNCC	1 cut(s)	951
BmiI	GGNNCC	2 cut(s)	916, 953
BmrFI	CCNGG	3 cut(s)	252, 760, 1020
BmsI	GCATC	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	789, 929
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	80, 1056
Bsa29I	ATCGAT	1 cut(s)	934
BsaJI	CCNNGG	2 cut(s)	560, 747
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 251, 1019
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	16
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	252, 760, 1020
BseCI	ATCGAT	1 cut(s)	934
BseDI	CCNNGG	2 cut(s)	560, 747
BseGI	GGATG	7 cut(s)	105, 209, 675, 691, 743, 991, 1034
BseLI	CCNNNNNNNGG	3 cut(s)	200, 251, 1019
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	59, 660, 717
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	5 cut(s)	110, 183, 496, 499, 692
BseXI	GCAGC	6 cut(s)	479, 800, 850, 889, 892, 895
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	1006
BshFI	GGCC	2 cut(s)	565, 952
BshVI	ATCGAT	1 cut(s)	934
BsiEI	CGRYCG	1 cut(s)	1006
BsiHKAI	GWGCWC	2 cut(s)	66, 293
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	200, 251, 1019
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	565, 952
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	66, 293
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	115, 832, 868, 914, 1003
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	1 cut(s)	773
BspANI	GGCC	2 cut(s)	565, 952
BspCNI	CTCAG	3 cut(s)	58, 659, 716
BspDI	ATCGAT	1 cut(s)	934
BspEI	TCCGGA	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	1050
BspLI	GGNNCC	2 cut(s)	916, 953
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	909, 922
BspQI	GCTCTTC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	560, 747
BssMI	GATC	5 cut(s)	115, 832, 868, 914, 1003
BssT1I	CCWWGG	2 cut(s)	560, 747
Bst2UI	CCWGG	3 cut(s)	252, 760, 1020
Bst4CI	ACNGT	3 cut(s)	212, 353, 721
Bst6I	CTCTTC	3 cut(s)	128, 182, 502
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	3 cut(s)	45, 646, 703
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	7 cut(s)	105, 209, 675, 691, 743, 991, 1034
BstKTI	GATC	5 cut(s)	118, 835, 871, 917, 1006
BstMBI	GATC	5 cut(s)	115, 832, 868, 914, 1003
BstMCI	CGRYCG	1 cut(s)	1006
BstMWI	GCNNNNNNNGC	1 cut(s)	883
BstNI	CCWGG	3 cut(s)	252, 760, 1020
BstNSI	RCATGY	2 cut(s)	337, 695
BstSCI	CCNGG	3 cut(s)	250, 758, 1018
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	6 cut(s)	479, 800, 850, 889, 892, 895
BstV2I	GAAGAC	2 cut(s)	789, 929
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	914
Bsu15I	ATCGAT	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	565, 952
BsuTUI	ATCGAT	1 cut(s)	934
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	7 cut(s)	105, 209, 675, 691, 743, 991, 1034
BtsIMutI	CAGTG	2 cut(s)	53, 726
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	1 cut(s)	1050
Cfr13I	GGNCC	1 cut(s)	951
ClaI	ATCGAT	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	85, 319, 786
CviAII	CATG	6 cut(s)	88, 334, 692, 748, 972, 1051
CviQI	GTAC	3 cut(s)	85, 319, 786
DdeI	CTNAG	3 cut(s)	45, 646, 703
DpnI	GATC	5 cut(s)	117, 834, 870, 916, 1005
DpnII	GATC	5 cut(s)	115, 832, 868, 914, 1003
Eam1104I	CTCTTC	3 cut(s)	128, 182, 502
EarI	CTCTTC	3 cut(s)	128, 182, 502
Eco130I	CCWWGG	2 cut(s)	560, 747
Eco147I	AGGCCT	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	696, 827
EcoRII	CCWGG	3 cut(s)	250, 758, 1018
EcoT14I	CCWWGG	2 cut(s)	560, 747
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	560, 747
FaeI	CATG	6 cut(s)	91, 337, 695, 751, 975, 1054
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FatI	CATG	6 cut(s)	87, 333, 691, 747, 971, 1050
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	6 cut(s)	468, 814, 839, 878, 881, 884
FokI	GGATG	7 cut(s)	92, 216, 682, 698, 730, 998, 1021
Fsp4HI	GCNGC	6 cut(s)	468, 814, 839, 878, 881, 884
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	6 cut(s)	468, 814, 839, 878, 881, 884
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	565, 952
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	6 cut(s)	91, 337, 695, 751, 975, 1054
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	176, 543, 1059
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	6 cut(s)	451, 514, 578, 649, 706, 846
Hpy188III	TCNNGA	8 cut(s)	96, 113, 217, 308, 357, 590, 1051, 1073
Hpy8I	GTNNAC	1 cut(s)	768
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	5 cut(s)	249, 564, 667, 720, 905
HpyCH4III	ACNGT	3 cut(s)	212, 353, 721
HpyCH4V	TGCA	4 cut(s)	261, 337, 467, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	883
HpyF3I	CTNAG	3 cut(s)	45, 646, 703
Hsp92II	CATG	6 cut(s)	91, 337, 695, 751, 975, 1054
Kpn2I	TCCGGA	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	115, 832, 868, 914, 1003
LguI	GCTCTTC	1 cut(s)	182
Lsp1109I	GCAGC	6 cut(s)	479, 800, 850, 889, 892, 895
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	1 cut(s)	459
MalI	GATC	5 cut(s)	117, 834, 870, 916, 1005
MboI	GATC	5 cut(s)	115, 832, 868, 914, 1003
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	2 cut(s)	66, 293
MluCI	AATT	4 cut(s)	198, 390, 423, 780
MlyI	GAGTC	2 cut(s)	149, 614
Mph1103I	ATGCAT	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	212
MslI	CAYNNNNRTG	2 cut(s)	46, 891
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	252, 760, 1020
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	3 cut(s)	252, 760, 1020
MwoI	GCNNNNNNNGC	1 cut(s)	883
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	5 cut(s)	115, 832, 868, 914, 1003
NlaIII	CATG	6 cut(s)	91, 337, 695, 751, 975, 1054
NlaIV	GGNNCC	2 cut(s)	916, 953
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	2 cut(s)	337, 695
NspV	TTCGAA	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	1050
PceI	AGGCCT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	182
PctI	GAATGC	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	469, 815, 840, 879, 882, 885
Ple19I	CGATCG	1 cut(s)	1006
PleI	GAGTC	2 cut(s)	149, 614
PpsI	GAGTC	2 cut(s)	149, 614
Psp6I	CCWGG	3 cut(s)	250, 758, 1018
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	250, 758, 1018
PspN4I	GGNNCC	2 cut(s)	916, 953
PspPI	GGNCC	1 cut(s)	951
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	914
PvuI	CGATCG	1 cut(s)	1006
RsaI	GTAC	3 cut(s)	86, 320, 787
RsaNI	GTAC	3 cut(s)	85, 319, 786
RseI	CAYNNNNRTG	2 cut(s)	46, 891
SapI	GCTCTTC	1 cut(s)	182
SatI	GCNGC	6 cut(s)	468, 814, 839, 878, 881, 884
Sau3AI	GATC	5 cut(s)	115, 832, 868, 914, 1003
Sau96I	GGNCC	1 cut(s)	951
ScaI	AGTACT	2 cut(s)	320, 787
SchI	GAGTC	2 cut(s)	149, 614
ScrFI	CCNGG	3 cut(s)	252, 760, 1020
SduI	GDGCHC	2 cut(s)	66, 293
SfaNI	GCATC	1 cut(s)	858
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	46, 891
SmlI	CTYRAG	2 cut(s)	59, 1071
SmoI	CTYRAG	2 cut(s)	59, 1071
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	4 cut(s)	198, 390, 423, 780
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	773
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	250, 758, 1018
StyI	CCWWGG	2 cut(s)	560, 747
TaaI	ACNGT	3 cut(s)	212, 353, 721
TaqI	TCGA	4 cut(s)	314, 934, 942, 998
TasI	AATT	4 cut(s)	198, 390, 423, 780
TatI	WGTACW	3 cut(s)	84, 318, 785
TscAI	CASTG	2 cut(s)	53, 726
TseI	GCWGC	6 cut(s)	467, 813, 838, 877, 880, 883
TspDTI	ATGAA	7 cut(s)	17, 464, 474, 686, 732, 920, 960
TspRI	CASTG	2 cut(s)	53, 726
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	2 cut(s)	337, 695
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	2 cut(s)	320, 787
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.