RchiOBHm_Chr2g0094541

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007690
Physical Location & Seq
Reverse (-)
7477312 .. 7479350
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46954

Sequence Viewer

Length: 1119 bp
ATGATGAGTAGTAGTGGTGTGAGAGGCATGAGGTTTCCTTTTACTCCATCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATTTACAAGTACATGGTTTCTGGCATACCAATTCCTCCTGATCTCCTCTTCTCCATCAAAAGAAGCTGCTTGGACTCTCCTCCTCTCTCTTCAAAGCTCTTCTCTCCTCACATTGGGTGGAACTGTTTTCAGATGGGCCTGGGGAGGAAGATAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTTCAAAAGAGGCATTTGCTGATTCTAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAGCAACACCACCAACATCAGCAAATTCAAACTCTAACTCAAACTCAAGCACTTCACCAATCACCAAGATTTTCAACTCACCTTCCAATTCACTAAGCACACCCTTCCATTCACTATCGTCACTCTCACCCAATGAAAGTAGCTACAATAGTAGTAGTTCTGCCCATCTTGATGATCATCATTTCCTTTATTCAAGGCCAAACATGGGGTTTTCACAGCAAGAAAGAGGCACCTCCTTGTTTTTGGAATCTGCTTCGTACAATAATAATCCCCTGCATCCCAACTTAGAATACAGATCAAACAGGTTTGGTTATGGGGTGAAAGAAGACGTGGATGAGCATGCATTCTTCTCAGAGCCTTCAGGGAGTGTTAGAGGCTTCTCTGGCTCTTCTTCATCTTTGGATCATCATCAAAATGAATCCAATTGGCAGCTCACAATGAGTTGTTCCAACTCCTCTTCAAAACAGAGGACGTGCTCTGCTTTACAAGCAGAGCAATACCCTCATTTGCAGCTTCAGAACTTCAGTGACTCCAAAATGGAGAGAAGAGAAGAAACCCAGAGAACCATACATCACTTCTTTGATGAAGGGCCTCCCAAAGAGAGAGATTCATCCTGGCTTGATTTGGATGGTAACAGTAAATCTTCAAACAGTGGATCAGTTTCCACCACCAGGCTCTCAATCTCCATACCAAACTCTGCTCATGACTTCCCCATCTTCAATTCAAGAAATCATCATGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

372

Amino Acids

42.0

Weight (kDa)

8.41

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 13 - 46 4.1e-16 QLQ
WRC PF08879 80 - 122 2.1e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 602
AclWI GGATC 2 cut(s) 783, 1036
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 3 cut(s) 717, 872, 880
AfaI GTAC 3 cut(s) 92, 314, 632
AfiI CCNNNNNNNGG 4 cut(s) 194, 245, 578, 1044
AjiI CACGTC 2 cut(s) 703, 846
AjnI CCWGG 4 cut(s) 219, 244, 986, 1043
AluBI AGCT 7 cut(s) 64, 77, 147, 178, 516, 805, 886
AluI AGCT 7 cut(s) 64, 77, 147, 178, 516, 805, 886
Alw21I GWGCWC 2 cut(s) 72, 851
AlwI GGATC 2 cut(s) 783, 1036
AoxI GGCC 3 cut(s) 217, 569, 962
ApeKI GCWGC 3 cut(s) 147, 802, 883
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 217, 962
AsuHPI GGTGA 5 cut(s) 420, 427, 444, 492, 703
BanI GGYRCC 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 72, 851
BbvI GCAGC 3 cut(s) 134, 814, 895
BccI CCATC 7 cut(s) 55, 143, 208, 260, 546, 995, 1094
BciT130I CCWGG 4 cut(s) 221, 246, 988, 1045
BclI TGATCA 1 cut(s) 547
BisI GCNGC 3 cut(s) 148, 803, 884
BlsI GCNGC 3 cut(s) 149, 804, 885
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 4 cut(s) 221, 246, 988, 1045
BmgBI CACGTC 2 cut(s) 703, 846
BmgT120I GGNCC 2 cut(s) 217, 962
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 4 cut(s) 221, 246, 988, 1045
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 86, 403
BsaBI GATNNNNATC 2 cut(s) 549, 780
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 245, 578, 1044
Bse8I GATNNNNATC 2 cut(s) 549, 780
BseBI CCWGG 4 cut(s) 221, 246, 988, 1045
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 4 cut(s) 649, 712, 983, 1006
BseJI GATNNNNATC 2 cut(s) 549, 780
BseLI CCNNNNNNNGG 4 cut(s) 194, 245, 578, 1044
BseMII CTCAG 1 cut(s) 738
BseRI GAGGAG 5 cut(s) 116, 150, 153, 177, 817
BseXI GCAGC 3 cut(s) 134, 814, 895
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 3 cut(s) 219, 571, 964
BshNI GGYRCC 1 cut(s) 602
BsiHKAI GWGCWC 2 cut(s) 72, 851
BslI CCNNNNNNNGG 4 cut(s) 194, 245, 578, 1044
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 219, 571, 964
Bsp1286I GDGCHC 2 cut(s) 72, 851
Bsp143I GATC 5 cut(s) 121, 547, 668, 775, 1028
BspANI GGCC 3 cut(s) 219, 571, 964
BspCNI CTCAG 1 cut(s) 737
BspHI TCATGA 2 cut(s) 1075, 1108
BspLI GGNNCC 1 cut(s) 604
BspPI GGATC 2 cut(s) 783, 1036
BspQI GCTCTTC 2 cut(s) 185, 766
BspT107I GGYRCC 1 cut(s) 602
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 5 cut(s) 121, 547, 668, 775, 1028
Bst2UI CCWGG 4 cut(s) 221, 246, 988, 1045
Bst4CI ACNGT 5 cut(s) 206, 317, 347, 1010, 1025
Bst6I CTCTTC 6 cut(s) 134, 175, 185, 766, 835, 913
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 4 cut(s) 309, 467, 658, 724
BstF5I GGATG 4 cut(s) 649, 712, 983, 1006
BstKTI GATC 5 cut(s) 124, 550, 671, 778, 1031
BstMBI GATC 5 cut(s) 121, 547, 668, 775, 1028
BstMWI GCNNNNNNNGC 2 cut(s) 756, 860
BstNI CCWGG 4 cut(s) 221, 246, 988, 1045
BstNSI RCATGY 2 cut(s) 331, 716
BstSCI CCNGG 4 cut(s) 219, 244, 986, 1043
BstV1I GCAGC 3 cut(s) 134, 814, 895
BstV2I GAAGAC 1 cut(s) 705
BstXI CCANNNNNNTGG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 219, 571, 964
BtrI CACGTC 2 cut(s) 703, 846
BtsCI GGATG 4 cut(s) 649, 712, 983, 1006
BtsIMutI CAGTG 2 cut(s) 904, 1030
Cac8I GCNNGC 1 cut(s) 714
CciI TCATGA 2 cut(s) 1075, 1108
Cfr13I GGNCC 2 cut(s) 217, 962
Csp6I GTAC 3 cut(s) 91, 313, 631
CviAII CATG 7 cut(s) 28, 94, 328, 577, 713, 1076, 1109
CviQI GTAC 3 cut(s) 91, 313, 631
DdeI CTNAG 4 cut(s) 309, 467, 658, 724
DpnI GATC 5 cut(s) 123, 549, 670, 777, 1030
DpnII GATC 5 cut(s) 121, 547, 668, 775, 1028
Eam1104I CTCTTC 6 cut(s) 134, 175, 185, 766, 835, 913
EarI CTCTTC 6 cut(s) 134, 175, 185, 766, 835, 913
Eco57I CTGAAG 3 cut(s) 717, 872, 880
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 4 cut(s) 219, 244, 986, 1043
EcoT22I ATGCAT 2 cut(s) 333, 718
FaeI CATG 7 cut(s) 31, 97, 331, 580, 716, 1079, 1112
FatI CATG 7 cut(s) 27, 93, 327, 576, 712, 1075, 1108
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 148, 803, 884
FokI GGATG 4 cut(s) 636, 719, 970, 1013
Fsp4HI GCNGC 3 cut(s) 148, 803, 884
GluI GCNGC 3 cut(s) 148, 803, 884
HaeIII GGCC 3 cut(s) 219, 571, 964
Hin1II CATG 7 cut(s) 31, 97, 331, 580, 716, 1079, 1112
HinfI GANTC 6 cut(s) 155, 305, 620, 791, 902, 980
HphI GGTGA 5 cut(s) 420, 427, 444, 492, 703
Hpy188I TCNGA 4 cut(s) 81, 213, 727, 891
Hpy188III TCNNGA 6 cut(s) 119, 351, 542, 1076, 1098, 1109
HpyAV CCTTC 5 cut(s) 243, 465, 487, 741, 953
HpyCH4III ACNGT 5 cut(s) 206, 317, 347, 1010, 1025
HpyCH4IV ACGT 2 cut(s) 702, 845
HpyCH4V TGCA 5 cut(s) 255, 331, 649, 716, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 756, 860
HpyF3I CTNAG 4 cut(s) 309, 467, 658, 724
HpySE526I ACGT 2 cut(s) 702, 845
Hsp92II CATG 7 cut(s) 31, 97, 331, 580, 716, 1079, 1112
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 5 cut(s) 121, 547, 668, 775, 1028
LguI GCTCTTC 2 cut(s) 185, 766
Lsp1109I GCAGC 3 cut(s) 134, 814, 895
LweI GCATC 1 cut(s) 658
MaeII ACGT 2 cut(s) 702, 845
MaeIII GTNAC 3 cut(s) 492, 899, 1004
MalI GATC 5 cut(s) 123, 549, 670, 777, 1030
MboI GATC 5 cut(s) 121, 547, 668, 775, 1028
MfeI CAATTG 1 cut(s) 796
MhlI GDGCHC 2 cut(s) 72, 851
MluCI AATT 5 cut(s) 111, 397, 460, 796, 1093
MlyI GAGTC 2 cut(s) 149, 896
MmeI TCCRAC 1 cut(s) 846
Mph1103I ATGCAT 2 cut(s) 333, 718
MslI CAYNNNNRTG 3 cut(s) 52, 543, 786
MspR9I CCNGG 4 cut(s) 221, 246, 988, 1045
MunI CAATTG 1 cut(s) 796
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 4 cut(s) 221, 246, 988, 1045
MwoI GCNNNNNNNGC 2 cut(s) 756, 860
NdeII GATC 5 cut(s) 121, 547, 668, 775, 1028
NlaIII CATG 7 cut(s) 31, 97, 331, 580, 716, 1079, 1112
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 2 cut(s) 492, 899
NsiI ATGCAT 2 cut(s) 333, 718
NspI RCATGY 2 cut(s) 331, 716
PaeI GCATGC 1 cut(s) 716
PagI TCATGA 2 cut(s) 1075, 1108
PciSI GCTCTTC 2 cut(s) 185, 766
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 4 cut(s) 305, 620, 791, 980
PkrI GCNGC 3 cut(s) 149, 804, 885
PleI GAGTC 2 cut(s) 149, 896
PpsI GAGTC 2 cut(s) 149, 896
Psp6I CCWGG 4 cut(s) 219, 244, 986, 1043
PspGI CCWGG 4 cut(s) 219, 244, 986, 1043
PspN4I GGNNCC 1 cut(s) 604
PspPI GGNCC 2 cut(s) 217, 962
RsaI GTAC 3 cut(s) 92, 314, 632
RsaNI GTAC 3 cut(s) 91, 313, 631
RseI CAYNNNNRTG 3 cut(s) 52, 543, 786
SapI GCTCTTC 2 cut(s) 185, 766
SatI GCNGC 3 cut(s) 148, 803, 884
Sau3AI GATC 5 cut(s) 121, 547, 668, 775, 1028
Sau96I GGNCC 2 cut(s) 217, 962
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 2 cut(s) 149, 896
ScrFI CCNGG 4 cut(s) 221, 246, 988, 1045
SduI GDGCHC 2 cut(s) 72, 851
SfaNI GCATC 1 cut(s) 658
SmiMI CAYNNNNRTG 3 cut(s) 52, 543, 786
SmlI CTYRAG 2 cut(s) 65, 418
SmoI CTYRAG 2 cut(s) 65, 418
SphI GCATGC 1 cut(s) 716
Sse9I AATT 5 cut(s) 111, 397, 460, 796, 1093
StyD4I CCNGG 4 cut(s) 219, 244, 986, 1043
TaaI ACNGT 5 cut(s) 206, 317, 347, 1010, 1025
TaiI ACGT 2 cut(s) 705, 848
TasI AATT 5 cut(s) 111, 397, 460, 796, 1093
TatI WGTACW 2 cut(s) 90, 312
TfiI GAWTC 4 cut(s) 305, 620, 791, 980
TscAI CASTG 2 cut(s) 904, 1030
TseFI GTSAC 2 cut(s) 492, 899
TseI GCWGC 3 cut(s) 147, 802, 883
Tsp45I GTSAC 2 cut(s) 492, 899
TspDTI ATGAA 5 cut(s) 522, 756, 804, 972, 972
TspRI CASTG 2 cut(s) 904, 1030
XapI RAATTY 1 cut(s) 397
XceI RCATGY 2 cut(s) 331, 716
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 2 cut(s) 333, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.