Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Reverse (-)

17431154 .. 17433559

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1216000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGTAGCACTGGAAGAAGCGGCAGGTTTCCTTTCACTCCATCTCAGTGGCAGGAGCTTGAGCACCAAGCTCTTATCTACAAGTACATGGTTTCTGGAATCTCCATCCCTCCTGATCTCCTCTTCTCCCTCAAAAGAAGCTCCTGCAGCTTGGACTCCCCTCTCCCTCCAAAGATCTTCTCTCACCACCCTCCTCACATTGGATGGAACTGTTTCCAGATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAAGAGGCGTTTCTGGATTCGAAATACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTCTCAAAACACCACCAATTTCAACACCAAAGTCATCAAACACTTCAACAAGTACCACCAAAATCAACGCTTGTTCTGCTTCTCCAAGTCCTGCAGCTTTTCATTCCCTTTCCTCATCGCTCTCTTCTCTCTCCTCCTCTGATTCCCACCCTTACCCTTTCCTCTATCATCATCACTCACCTTCTTCAAGGCCTCCTGGAATTGGATTCCCACATCAAGAGAGAAACACTACCTCCTTGTTTTTGGACTCTGGTTCTTATCCCCAACCCAGCTCAGAATACAGGTATGCTTATGGGATGAAGGAGGAGGTGGATGAACATGCATTCTTCTCAGAGCCTTCAGGCACAGTGAGAGGCTTCTCTGGCTCTTCATCCATGGACGATTCGTGGCAGTTCACACCGCTCACAATTAGTACTTCTTCGTCGTCGAAACAGAGAAGCTGCTCTGCTTTTCAGAGTGATCAGCAGGATCAGCAGCTTCGGAGCATCAAACATCAAAAGCAAGATCATCATCAGCAGCAGCAGCATTACTACGCTATGGACCGAAATGAAGGATCCCAGAAGACCGTTCATCGATTCTTCGATGAATGGCCCCCTAAAGATAAAGATTCGTGGCTCGATTTGGATGATAAATCATCGAACAGCGGATCGGTTTCCACCACCAGGCTCTCAATCTCCATTCCTACCTCTGGTCATGACTTCCCCGTCTTCACCTCAAGACATCATAATAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

370

Amino Acids

41.69

Weight (kDa)

8.96

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	11 - 44	1.7e-14	QLQ
WRC	PF08879	82 - 124	4.7e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1076
Acc36I	ACCTGC	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	775
AciI	CCGC	3 cut(s)	21, 773, 1017
AclWI	GGATC	4 cut(s)	849, 921, 934, 1027
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	3 cut(s)	86, 427, 787
AfiI	CCNNNNNNNGG	5 cut(s)	200, 251, 575, 1035, 1061
AgsI	TTSAA	4 cut(s)	357, 396, 420, 561
AjnI	CCWGG	3 cut(s)	250, 568, 1034
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	8 cut(s)	58, 71, 141, 150, 470, 645, 813, 850
AluI	AGCT	8 cut(s)	58, 71, 141, 150, 470, 645, 813, 850
Alw21I	GWGCWC	2 cut(s)	66, 293
AlwI	GGATC	4 cut(s)	849, 921, 934, 1027
AoxI	GGCC	2 cut(s)	563, 962
ApeKI	GCWGC	7 cut(s)	147, 467, 813, 847, 889, 892, 895
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	913, 963
AsuHPI	GGTGA	3 cut(s)	176, 543, 1075
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	926
BbsI	GAAGAC	2 cut(s)	941, 1072
Bbv12I	GWGCWC	2 cut(s)	66, 293
BbvI	GCAGC	7 cut(s)	159, 479, 800, 859, 901, 904, 907
BccI	CCATC	5 cut(s)	49, 113, 198, 214, 266
BciT130I	CCWGG	3 cut(s)	252, 570, 1036
BclI	TGATCA	1 cut(s)	832
BfmI	CTRYAG	2 cut(s)	145, 465
BfuAI	ACCTGC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	8 cut(s)	22, 148, 468, 814, 848, 890, 893, 896
BlsI	GCNGC	8 cut(s)	23, 149, 469, 815, 849, 891, 894, 897
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	3 cut(s)	252, 570, 1036
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	2 cut(s)	913, 963
BmiI	GGNNCC	2 cut(s)	928, 965
BmrFI	CCNGG	3 cut(s)	252, 570, 1036
BmsI	GCATC	1 cut(s)	867
BpiI	GAAGAC	2 cut(s)	941, 1072
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	80, 1072
Bsa29I	ATCGAT	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	882
BsaJI	CCNNGG	1 cut(s)	747
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	5 cut(s)	200, 251, 575, 1035, 1061
Bse1I	ACTGG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	3 cut(s)	252, 570, 1036
BseCI	ATCGAT	1 cut(s)	946
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	6 cut(s)	105, 209, 675, 691, 743, 1003
BseJI	GATNNNNATC	1 cut(s)	882
BseLI	CCNNNNNNNGG	5 cut(s)	200, 251, 575, 1035, 1061
BseMII	CTCAG	3 cut(s)	59, 660, 717
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	5 cut(s)	110, 183, 496, 499, 692
BseXI	GCAGC	7 cut(s)	159, 479, 800, 859, 901, 904, 907
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	565, 964
BshVI	ATCGAT	1 cut(s)	946
BsiHKAI	GWGCWC	2 cut(s)	66, 293
BslI	CCNNNNNNNGG	5 cut(s)	200, 251, 575, 1035, 1061
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	565, 964
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	66, 293
Bsp143I	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	3 cut(s)	21, 773, 1017
BspANI	GGCC	2 cut(s)	565, 964
BspCNI	CTCAG	3 cut(s)	58, 659, 716
BspDI	ATCGAT	1 cut(s)	946
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	2 cut(s)	928, 965
BspMAI	CTGCAG	2 cut(s)	149, 469
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	4 cut(s)	849, 921, 934, 1027
BspQI	GCTCTTC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	747
BssMI	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	3 cut(s)	252, 570, 1036
Bst4CI	ACNGT	4 cut(s)	212, 353, 721, 940
Bst6I	CTCTTC	3 cut(s)	128, 502, 745
BstBI	TTCGAA	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	45, 646, 703
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	6 cut(s)	105, 209, 675, 691, 743, 1003
BstKTI	GATC	7 cut(s)	118, 177, 835, 844, 880, 929, 1022
BstMBI	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 449, 735, 844, 895
BstNI	CCWGG	3 cut(s)	252, 570, 1036
BstNSI	RCATGY	2 cut(s)	337, 695
BstSCI	CCNGG	3 cut(s)	250, 568, 1034
BstSFI	CTRYAG	2 cut(s)	145, 465
BstV1I	GCAGC	7 cut(s)	159, 479, 800, 859, 901, 904, 907
BstV2I	GAAGAC	2 cut(s)	941, 1072
BstX2I	RGATCY	2 cut(s)	174, 926
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstYI	RGATCY	2 cut(s)	174, 926
Bsu15I	ATCGAT	1 cut(s)	946
BsuRI	GGCC	2 cut(s)	565, 964
BsuTUI	ATCGAT	1 cut(s)	946
BtgI	CCRYGG	1 cut(s)	747
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	6 cut(s)	105, 209, 675, 691, 743, 1003
BtsIMutI	CAGTG	3 cut(s)	9, 53, 726
BveI	ACCTGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	1066
Cfr13I	GGNCC	2 cut(s)	913, 963
ClaI	ATCGAT	1 cut(s)	946
Csp6I	GTAC	3 cut(s)	85, 426, 786
CviAII	CATG	5 cut(s)	88, 334, 692, 748, 1067
CviQI	GTAC	3 cut(s)	85, 426, 786
DdeI	CTNAG	3 cut(s)	45, 646, 703
DpnI	GATC	7 cut(s)	117, 176, 834, 843, 879, 928, 1021
DpnII	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
DrdI	GACNNNNNNGTC	1 cut(s)	1076
DseDI	GACNNNNNNGTC	1 cut(s)	1076
Eam1104I	CTCTTC	3 cut(s)	128, 502, 745
EarI	CTCTTC	3 cut(s)	128, 502, 745
Eco130I	CCWWGG	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	696
EcoRII	CCWGG	3 cut(s)	250, 568, 1034
EcoT14I	CCWWGG	1 cut(s)	747
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	5 cut(s)	91, 337, 695, 751, 1070
FaiI	YATR	9 cut(s)	89, 335, 660, 666, 693, 749, 911, 1068, 1098
FatI	CATG	5 cut(s)	87, 333, 691, 747, 1066
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	8 cut(s)	22, 148, 468, 814, 848, 890, 893, 896
FokI	GGATG	6 cut(s)	92, 216, 682, 698, 730, 1010
Fsp4HI	GCNGC	8 cut(s)	22, 148, 468, 814, 848, 890, 893, 896
GluI	GCNGC	8 cut(s)	22, 148, 468, 814, 848, 890, 893, 896
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	565, 964
Hin1II	CATG	5 cut(s)	91, 337, 695, 751, 1070
HinfI	GANTC	9 cut(s)	99, 155, 311, 515, 579, 620, 755, 948, 980
HphI	GGTGA	3 cut(s)	176, 543, 1075
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	5 cut(s)	514, 649, 706, 828, 855
Hpy188III	TCNNGA	8 cut(s)	96, 113, 217, 308, 357, 590, 1067, 1089
Hpy8I	GTNNAC	1 cut(s)	768
Hpy99I	CGWCG	2 cut(s)	799, 802
HpyAV	CCTTC	5 cut(s)	249, 564, 667, 720, 917
HpyCH4III	ACNGT	4 cut(s)	212, 353, 721, 940
HpyCH4V	TGCA	5 cut(s)	147, 261, 337, 467, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 449, 735, 844, 895
HpyF3I	CTNAG	3 cut(s)	45, 646, 703
Hsp92II	CATG	5 cut(s)	91, 337, 695, 751, 1070
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
LguI	GCTCTTC	1 cut(s)	745
LmnI	GCTCC	3 cut(s)	55, 146, 855
Lsp1109I	GCAGC	7 cut(s)	159, 479, 800, 859, 901, 904, 907
LweI	GCATC	1 cut(s)	867
MalI	GATC	7 cut(s)	117, 176, 834, 843, 879, 928, 1021
MbiI	CCGCTC	1 cut(s)	775
MboI	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
MflI	RGATCY	2 cut(s)	174, 926
MhlI	GDGCHC	2 cut(s)	66, 293
MluCI	AATT	3 cut(s)	390, 573, 780
MlyI	GAGTC	2 cut(s)	149, 614
Mph1103I	ATGCAT	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	212
MslI	CAYNNNNRTG	2 cut(s)	46, 1101
MspA1I	CMGCKG	1 cut(s)	1017
MspR9I	CCNGG	3 cut(s)	252, 570, 1036
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	3 cut(s)	252, 570, 1036
MwoI	GCNNNNNNNGC	5 cut(s)	147, 449, 735, 844, 895
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
NlaIII	CATG	5 cut(s)	91, 337, 695, 751, 1070
NlaIV	GGNNCC	2 cut(s)	928, 965
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	2 cut(s)	337, 695
NspV	TTCGAA	1 cut(s)	314
PagI	TCATGA	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	745
PctI	GAATGC	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	7 cut(s)	99, 311, 515, 579, 755, 948, 980
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	8 cut(s)	23, 149, 469, 815, 849, 891, 894, 897
PleI	GAGTC	2 cut(s)	149, 614
PpsI	GAGTC	2 cut(s)	149, 614
Psp6I	CCWGG	3 cut(s)	250, 568, 1034
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	3 cut(s)	250, 568, 1034
PspN4I	GGNNCC	2 cut(s)	928, 965
PspPI	GGNCC	2 cut(s)	913, 963
PstI	CTGCAG	2 cut(s)	149, 469
PsuI	RGATCY	2 cut(s)	174, 926
RsaI	GTAC	3 cut(s)	86, 427, 787
RsaNI	GTAC	3 cut(s)	85, 426, 786
RseI	CAYNNNNRTG	2 cut(s)	46, 1101
SapI	GCTCTTC	1 cut(s)	745
SatI	GCNGC	8 cut(s)	22, 148, 468, 814, 848, 890, 893, 896
Sau3AI	GATC	7 cut(s)	115, 174, 832, 841, 877, 926, 1019
Sau96I	GGNCC	2 cut(s)	913, 963
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	2 cut(s)	149, 614
ScrFI	CCNGG	3 cut(s)	252, 570, 1036
SduI	GDGCHC	2 cut(s)	66, 293
SfaNI	GCATC	1 cut(s)	867
SfcI	CTRYAG	2 cut(s)	145, 465
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	1 cut(s)	913
SmiMI	CAYNNNNRTG	2 cut(s)	46, 1101
SmlI	CTYRAG	2 cut(s)	59, 1087
SmoI	CTYRAG	2 cut(s)	59, 1087
Sse9I	AATT	3 cut(s)	390, 573, 780
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	3 cut(s)	21, 773, 1017
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	250, 568, 1034
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	4 cut(s)	212, 353, 721, 940
TaqI	TCGA	6 cut(s)	314, 800, 946, 954, 990, 1010
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	3 cut(s)	390, 573, 780
TatI	WGTACW	2 cut(s)	84, 785
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	7 cut(s)	99, 311, 515, 579, 755, 948, 980
TscAI	CASTG	3 cut(s)	16, 53, 726
TseI	GCWGC	7 cut(s)	147, 467, 813, 847, 889, 892, 895
TspDTI	ATGAA	7 cut(s)	464, 686, 702, 732, 932, 936, 972
TspRI	CASTG	3 cut(s)	16, 53, 726
VpaK11BI	GGWCC	1 cut(s)	913
XceI	RCATGY	2 cut(s)	337, 695
XmnI	GAANNNNTTC	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	787
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.