Prupe.7G201000_v2.0.a1

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0007690
Physical Location & Seq
Forward (+)
18750960 .. 18753565
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G201000.1

Sequence Viewer

Length: 1140 bp
ATGAGTGGGAGAACCAGGTTTCCTTTTACACCGTCTCAGTGGCAAGAGCTTGAGCACCAAGCTCTTATCTACAAGTACATGGTTTCAGGCATCTCCATCCCACCTGATCTCCTCTTCTCCATCAAAAGAAGCTGCTTGGACTCTCCTCTGCCTTCAAAGCTCTTCTCACACCACCCTCCGCATATTGGATGGAGCTGTTTCCAGATGGGTTTGGGGAGGAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGATGCTCAAAAGAGGCATTTGCTGATTCAAAATACTGTGAGAGACACATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAACACCAATTACAACAAACTCAAACCCATCATCATCATCAACACCAACAACCATCTCATCAATCACCTCCAAGAACAACCCCCCTTCTACATCAACCGCAACCTTCCATTCCCTTTCTTCATCACTCTCATCACTGTCCTCTGACTCCCACCACGCTCAGCCCAACCACTCTAGTTACAATACCAATCTTGATCATCACCCTTTCCTCTATCATCACACATCTTCTTCAAGGCCTCCTGGATTTGGTTTGTCACATCAAGAAAGAAATACTTCCTTGCTTCTGGACTCTGGTTCTTATCCCCAAGCCAGCTCAGAATACAGAAATAGGTATGTTTATGGGCTGAAGGAGGAGGTGGATGAGCATGCATTCTTCTCAGAACCTTCGGGGTCTGTGAGAGACTTCTCTGGCTCTTCATCTATGGATGACTCTTGGCAGTTCACACCACTGACAATGAGTACTTGCACTTCTTCATCTTCAAAACAGAGAAGCTGCTCTGCTTTACAGAGTGAACACTCTCACTTGCAGCTTCAGAGCAATATCACTCCTAAACAGCAGAATTACTATGCTTTGGGTAGTGACATGAAAATGGACAGAAATGAAGGAACCCAGAAAACCATTCATCGCTTCTTTGATGAGTGGCCCCTGAAAGACAAAGATTCATGGCTTGACTTGGATGATAAATCATCAAACAGTGGATCAGTTTCAAACACCAGGCTCTCAATCTCCACTCATGACTTCCCCATCTTCAGCTCAAGAAATCATAATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

380

Amino Acids

42.81

Weight (kDa)

8.58

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 179, 462
AclWI GGATC 1 cut(s) 1069
AcuI CTGAAG 3 cut(s) 728, 878, 1096
AfaI GTAC 2 cut(s) 77, 823
AfiI CCNNNNNNNGG 3 cut(s) 185, 236, 608
AgsI TTSAA 7 cut(s) 156, 300, 342, 364, 594, 843, 1071
AjnI CCWGG 4 cut(s) 14, 235, 601, 1076
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 9 cut(s) 49, 62, 132, 160, 195, 675, 855, 892, 1116
AluI AGCT 9 cut(s) 49, 62, 132, 160, 195, 675, 855, 892, 1116
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 39, 307, 756
AlwI GGATC 1 cut(s) 1069
AoxI GGCC 2 cut(s) 596, 1004
ApeKI GCWGC 3 cut(s) 132, 855, 889
Asp700I GAANNNNTTC 1 cut(s) 634
AspS9I GGNCC 1 cut(s) 1005
AsuHPI GGTGA 2 cut(s) 421, 554
BarI GAAGNNNNNNTAC 2 cut(s) 814, 846
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 119, 842, 901
BccI CCATC 8 cut(s) 104, 128, 183, 199, 251, 400, 425, 1115
BciT130I CCWGG 4 cut(s) 16, 237, 603, 1078
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 39, 307, 756
BfaI CTAG 1 cut(s) 537
BisI GCNGC 3 cut(s) 133, 856, 890
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 3 cut(s) 134, 857, 891
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 4 cut(s) 16, 237, 603, 1078
BmgT120I GGNCC 1 cut(s) 1005
BmiI GGNNCC 2 cut(s) 970, 1007
BmrFI CCNGG 4 cut(s) 16, 237, 603, 1078
BmsI GCATC 2 cut(s) 99, 263
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 71, 1102
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 236, 608
BseBI CCWGG 4 cut(s) 16, 237, 603, 1078
BseGI GGATG 5 cut(s) 96, 194, 727, 793, 1045
BseLI CCNNNNNNNGG 3 cut(s) 185, 236, 608
BseMII CTCAG 4 cut(s) 50, 536, 690, 753
BseRI GAGGAG 3 cut(s) 101, 135, 728
BseXI GCAGC 3 cut(s) 119, 842, 901
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 598, 1006
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 185, 236, 608
BsmAI GTCTC 3 cut(s) 39, 307, 756
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 598, 1006
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 106, 556, 1061
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 2 cut(s) 179, 462
BspANI GGCC 2 cut(s) 598, 1006
BspCNI CTCAG 4 cut(s) 49, 535, 689, 752
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 2 cut(s) 970, 1007
BspPI GGATC 1 cut(s) 1069
BspQI GCTCTTC 2 cut(s) 167, 781
BssMI GATC 3 cut(s) 106, 556, 1061
Bst2UI CCWGG 4 cut(s) 16, 237, 603, 1078
Bst4CI ACNGT 5 cut(s) 33, 308, 338, 501, 1058
Bst6I CTCTTC 3 cut(s) 119, 167, 781
BstC8I GCNNGC 2 cut(s) 673, 729
BstDEI CTNAG 4 cut(s) 36, 522, 676, 739
BstF5I GGATG 5 cut(s) 96, 194, 727, 793, 1045
BstKTI GATC 3 cut(s) 109, 559, 1064
BstMAI GTCTC 3 cut(s) 39, 307, 756
BstMBI GATC 3 cut(s) 106, 556, 1061
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 4 cut(s) 16, 237, 603, 1078
BstNSI RCATGY 2 cut(s) 322, 731
BstSCI CCNGG 4 cut(s) 14, 235, 601, 1076
BstV1I GCAGC 3 cut(s) 119, 842, 901
BsuRI GGCC 2 cut(s) 598, 1006
BtgZI GCGATG 1 cut(s) 971
BtsCI GGATG 5 cut(s) 96, 194, 727, 793, 1045
BtsIMutI CAGTG 4 cut(s) 44, 497, 809, 1063
Cac8I GCNNGC 2 cut(s) 673, 729
CciI TCATGA 1 cut(s) 1096
Cfr13I GGNCC 1 cut(s) 1005
CsiI ACCWGGT 1 cut(s) 14
Csp6I GTAC 2 cut(s) 76, 822
CviAII CATG 6 cut(s) 79, 319, 728, 946, 1026, 1097
CviQI GTAC 2 cut(s) 76, 822
DdeI CTNAG 4 cut(s) 36, 522, 676, 739
DpnI GATC 3 cut(s) 108, 558, 1063
DpnII GATC 3 cut(s) 106, 556, 1061
Eam1104I CTCTTC 3 cut(s) 119, 167, 781
EarI CTCTTC 3 cut(s) 119, 167, 781
Eco147I AGGCCT 1 cut(s) 598
Eco57I CTGAAG 3 cut(s) 728, 878, 1096
EcoRII CCWGG 4 cut(s) 14, 235, 601, 1076
EcoT22I ATGCAT 1 cut(s) 733
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 6 cut(s) 82, 322, 731, 949, 1029, 1100
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 6 cut(s) 78, 318, 727, 945, 1025, 1096
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 133, 856, 890
FokI GGATG 5 cut(s) 83, 201, 734, 800, 1052
Fsp4HI GCNGC 3 cut(s) 133, 856, 890
FspBI CTAG 1 cut(s) 537
GluI GCNGC 3 cut(s) 133, 856, 890
HaeIII GGCC 2 cut(s) 598, 1006
Hin1II CATG 6 cut(s) 82, 322, 731, 949, 1029, 1100
HinfI GANTC 6 cut(s) 140, 296, 509, 650, 791, 1022
HphI GGTGA 2 cut(s) 421, 554
Hpy166II GTNNAC 3 cut(s) 226, 804, 875
Hpy188I TCNGA 4 cut(s) 508, 679, 742, 897
Hpy188III TCNNGA 7 cut(s) 202, 342, 554, 623, 647, 1097, 1119
Hpy8I GTNNAC 3 cut(s) 226, 804, 875
HpyAV CCTTC 7 cut(s) 162, 234, 459, 478, 703, 756, 959
HpyCH4III ACNGT 5 cut(s) 33, 308, 338, 501, 1058
HpyCH4V TGCA 5 cut(s) 246, 322, 731, 828, 889
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 4 cut(s) 36, 522, 676, 739
Hsp92II CATG 6 cut(s) 82, 322, 731, 949, 1029, 1100
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 106, 556, 1061
LguI GCTCTTC 2 cut(s) 167, 781
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 3 cut(s) 119, 842, 901
LweI GCATC 2 cut(s) 99, 263
MabI ACCWGGT 1 cut(s) 14
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 3 cut(s) 539, 615, 941
MalI GATC 3 cut(s) 108, 558, 1063
MboI GATC 3 cut(s) 106, 556, 1061
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 372, 922
MlyI GAGTC 4 cut(s) 134, 503, 644, 785
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 634
MslI CAYNNNNRTG 2 cut(s) 950, 1131
MspR9I CCNGG 4 cut(s) 16, 237, 603, 1078
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 4 cut(s) 16, 237, 603, 1078
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 3 cut(s) 106, 556, 1061
NlaIII CATG 6 cut(s) 82, 322, 731, 949, 1029, 1100
NlaIV GGNNCC 2 cut(s) 970, 1007
NmuCI GTSAC 2 cut(s) 615, 941
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 2 cut(s) 322, 731
PaeI GCATGC 1 cut(s) 731
PagI TCATGA 1 cut(s) 1096
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 2 cut(s) 167, 781
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 296, 1022
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 3 cut(s) 134, 857, 891
PleI GAGTC 4 cut(s) 134, 503, 644, 785
PpsI GAGTC 4 cut(s) 134, 503, 644, 785
Psp6I CCWGG 4 cut(s) 14, 235, 601, 1076
PspGI CCWGG 4 cut(s) 14, 235, 601, 1076
PspN4I GGNNCC 2 cut(s) 970, 1007
PspPI GGNCC 1 cut(s) 1005
RsaI GTAC 2 cut(s) 77, 823
RsaNI GTAC 2 cut(s) 76, 822
RseI CAYNNNNRTG 2 cut(s) 950, 1131
SapI GCTCTTC 2 cut(s) 167, 781
SatI GCNGC 3 cut(s) 133, 856, 890
Sau3AI GATC 3 cut(s) 106, 556, 1061
Sau96I GGNCC 1 cut(s) 1005
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 4 cut(s) 134, 503, 644, 785
ScrFI CCNGG 4 cut(s) 16, 237, 603, 1078
SduI GDGCHC 1 cut(s) 57
SexAI ACCWGGT 1 cut(s) 14
SfaNI GCATC 2 cut(s) 99, 263
SmiMI CAYNNNNRTG 2 cut(s) 950, 1131
SmlI CTYRAG 2 cut(s) 50, 1117
SmoI CTYRAG 2 cut(s) 50, 1117
SphI GCATGC 1 cut(s) 731
Sse9I AATT 2 cut(s) 372, 922
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 2 cut(s) 179, 462
SspMI CTAG 1 cut(s) 537
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 4 cut(s) 14, 235, 601, 1076
TaaI ACNGT 5 cut(s) 33, 308, 338, 501, 1058
TasI AATT 2 cut(s) 372, 922
TatI WGTACW 2 cut(s) 75, 821
TfiI GAWTC 2 cut(s) 296, 1022
TscAI CASTG 4 cut(s) 44, 504, 816, 1063
TseFI GTSAC 2 cut(s) 615, 941
TseI GCWGC 3 cut(s) 132, 855, 889
Tsp45I GTSAC 2 cut(s) 615, 941
TspDTI ATGAA 7 cut(s) 474, 768, 825, 962, 974, 978, 1014
TspRI CASTG 4 cut(s) 44, 504, 816, 1063
XceI RCATGY 2 cut(s) 322, 731
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 634
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 823
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.