Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Forward (+)

85004604 .. 85006698

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATGAGTAGTAGTGGTGTGAGAGGCATGAGGTTTCCTTTTACCCCATCTCAATGGCAAGAGCTTGAGCACCAAGCTCTGATTTACAAGTACATGGTTTCTGGCATACCAATTCCTCCTGATCTCCTCTTCTCCATCAAAAGAAGCTGCTTGGACTCTCCTCCTCTCTCTTCGAAGCTCTTCTCTCCTCACATTGGGTGGAACTGTTTTCAGATGGGCCTGGGGAGGAAGATAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTTCAAAAGAGGCATTTGCTGATTCTAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAGCAACACCACCAACATCAGCAAATTCAAACTCTAACTCAAACTCAAGCACATCACCAATCACCAAGATTTTCAACTCACCTTCCAATTCACTAAGCACACCCTTCCATTCACTATCTTCACTGTCACCCAATGAAAGTAGCTACAAGAGTAGTAGTTCTGCTCATCTTGATGATCATCATTTCCTTTATTCAAGGCCAAACATGGGGTTTTCACAGCAAGAAAGAGGCACCTCCTTGTTTTTGGAATCTGCTTCGTACAATAATAATCCCCTGCATCCCAACTTAGAATACAGTGTTAGAGGCTTCTCTGGCTCTTCTTCATCTTTGGATCATCATCAAAATGAATCCAATTGGCAGCTCACAATGAGTTGTTCCAACTCCTCTTCAAAACAGAGGACGTGCTCTGCTTTACAAACAGAGCAATACCCTCATTTGCAGCTTCAGAACTTCAGTGACTCCAAAATGGAGAGAAGAGAAGAAACCCAGAGAACCATACATCACTTCTTTGATGAAGGGCCTCCCAAAGATAGAGATTCATCCTGGCTTGATTTGGATGGTAATAATAAATCTTCAAACAGTGGATCAGTTTCCACCACCAGGCTCTCAATCTCCATACCAAACTCTGCTCATGACTTCCCCATCTTCAATTCAAGAAACCATCATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

348

Amino Acids

39.35

Weight (kDa)

8.91

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	13 - 46	3.7e-16	QLQ
WRC	PF08879	80 - 122	1.9e-20	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AclWI	GGATC	2 cut(s)	711, 964
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	800, 808
AfaI	GTAC	3 cut(s)	92, 314, 632
AfiI	CCNNNNNNNGG	4 cut(s)	194, 245, 578, 972
AjiI	CACGTC	1 cut(s)	774
AjnI	CCWGG	4 cut(s)	219, 244, 914, 971
AluBI	AGCT	7 cut(s)	64, 77, 147, 178, 516, 733, 814
AluI	AGCT	7 cut(s)	64, 77, 147, 178, 516, 733, 814
Alw21I	GWGCWC	2 cut(s)	72, 779
AlwI	GGATC	2 cut(s)	711, 964
AoxI	GGCC	3 cut(s)	217, 569, 890
ApeKI	GCWGC	3 cut(s)	147, 730, 811
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	217, 890
AsuHPI	GGTGA	4 cut(s)	420, 427, 444, 492
AsuII	TTCGAA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	602
Bbv12I	GWGCWC	2 cut(s)	72, 779
BbvI	GCAGC	3 cut(s)	134, 742, 823
BccI	CCATC	7 cut(s)	55, 143, 208, 260, 923, 1022, 1041
BciT130I	CCWGG	4 cut(s)	221, 246, 916, 973
BclI	TGATCA	1 cut(s)	547
BisI	GCNGC	3 cut(s)	148, 731, 812
BlsI	GCNGC	3 cut(s)	149, 732, 813
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	4 cut(s)	221, 246, 916, 973
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	2 cut(s)	217, 890
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	4 cut(s)	221, 246, 916, 973
BmsI	GCATC	1 cut(s)	658
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	86, 403
BsaBI	GATNNNNATC	2 cut(s)	549, 708
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 245, 578, 972
Bse8I	GATNNNNATC	2 cut(s)	549, 708
BseBI	CCWGG	4 cut(s)	221, 246, 916, 973
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	649, 911, 934
BseJI	GATNNNNATC	2 cut(s)	549, 708
BseLI	CCNNNNNNNGG	4 cut(s)	194, 245, 578, 972
BseRI	GAGGAG	5 cut(s)	116, 150, 153, 177, 745
BseXI	GCAGC	3 cut(s)	134, 742, 823
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	219, 571, 892
BshNI	GGYRCC	1 cut(s)	602
BsiHKAI	GWGCWC	2 cut(s)	72, 779
BslI	CCNNNNNNNGG	4 cut(s)	194, 245, 578, 972
BsnI	GGCC	3 cut(s)	219, 571, 892
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	72, 779
Bsp143I	GATC	4 cut(s)	121, 547, 703, 956
BspANI	GGCC	3 cut(s)	219, 571, 892
BspHI	TCATGA	2 cut(s)	1003, 1036
BspLI	GGNNCC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	711, 964
BspQI	GCTCTTC	2 cut(s)	185, 694
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	121, 547, 703, 956
Bst2UI	CCWGG	4 cut(s)	221, 246, 916, 973
Bst4CI	ACNGT	6 cut(s)	206, 317, 347, 498, 668, 953
Bst6I	CTCTTC	6 cut(s)	134, 175, 185, 694, 763, 841
BstBI	TTCGAA	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	309, 467, 658
BstF5I	GGATG	3 cut(s)	649, 911, 934
BstKTI	GATC	4 cut(s)	124, 550, 706, 959
BstMBI	GATC	4 cut(s)	121, 547, 703, 956
BstMWI	GCNNNNNNNGC	1 cut(s)	684
BstNI	CCWGG	4 cut(s)	221, 246, 916, 973
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	219, 244, 914, 971
BstV1I	GCAGC	3 cut(s)	134, 742, 823
BstXI	CCANNNNNNTGG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	219, 571, 892
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	3 cut(s)	649, 911, 934
BtsIMutI	CAGTG	4 cut(s)	494, 673, 832, 958
CciI	TCATGA	2 cut(s)	1003, 1036
Cfr13I	GGNCC	2 cut(s)	217, 890
Csp6I	GTAC	3 cut(s)	91, 313, 631
CviAII	CATG	6 cut(s)	28, 94, 328, 577, 1004, 1037
CviQI	GTAC	3 cut(s)	91, 313, 631
DdeI	CTNAG	3 cut(s)	309, 467, 658
DpnI	GATC	4 cut(s)	123, 549, 705, 958
DpnII	GATC	4 cut(s)	121, 547, 703, 956
Eam1104I	CTCTTC	6 cut(s)	134, 175, 185, 694, 763, 841
EarI	CTCTTC	6 cut(s)	134, 175, 185, 694, 763, 841
Eco57I	CTGAAG	2 cut(s)	800, 808
EcoO109I	RGGNCCY	1 cut(s)	890
EcoRII	CCWGG	4 cut(s)	219, 244, 914, 971
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	6 cut(s)	31, 97, 331, 580, 1007, 1040
FatI	CATG	6 cut(s)	27, 93, 327, 576, 1003, 1036
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	3 cut(s)	148, 731, 812
FokI	GGATG	3 cut(s)	636, 898, 941
Fsp4HI	GCNGC	3 cut(s)	148, 731, 812
GluI	GCNGC	3 cut(s)	148, 731, 812
HaeIII	GGCC	3 cut(s)	219, 571, 892
Hin1II	CATG	6 cut(s)	31, 97, 331, 580, 1007, 1040
HinfI	GANTC	6 cut(s)	155, 305, 620, 719, 830, 908
HphI	GGTGA	4 cut(s)	420, 427, 444, 492
Hpy188I	TCNGA	3 cut(s)	81, 213, 819
Hpy188III	TCNNGA	6 cut(s)	119, 351, 542, 1004, 1026, 1037
HpyAV	CCTTC	4 cut(s)	243, 465, 487, 881
HpyCH4III	ACNGT	6 cut(s)	206, 317, 347, 498, 668, 953
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	4 cut(s)	255, 331, 649, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	684
HpyF3I	CTNAG	3 cut(s)	309, 467, 658
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	6 cut(s)	31, 97, 331, 580, 1007, 1040
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	121, 547, 703, 956
LguI	GCTCTTC	2 cut(s)	185, 694
Lsp1109I	GCAGC	3 cut(s)	134, 742, 823
LweI	GCATC	1 cut(s)	658
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	2 cut(s)	498, 827
MalI	GATC	4 cut(s)	123, 549, 705, 958
MboI	GATC	4 cut(s)	121, 547, 703, 956
MfeI	CAATTG	1 cut(s)	724
MhlI	GDGCHC	2 cut(s)	72, 779
MluCI	AATT	5 cut(s)	111, 397, 460, 724, 1021
MlyI	GAGTC	2 cut(s)	149, 824
MmeI	TCCRAC	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	179
MslI	CAYNNNNRTG	3 cut(s)	52, 543, 714
MspR9I	CCNGG	4 cut(s)	221, 246, 916, 973
MunI	CAATTG	1 cut(s)	724
MvaI	CCWGG	4 cut(s)	221, 246, 916, 973
MwoI	GCNNNNNNNGC	1 cut(s)	684
NdeII	GATC	4 cut(s)	121, 547, 703, 956
NlaIII	CATG	6 cut(s)	31, 97, 331, 580, 1007, 1040
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	2 cut(s)	498, 827
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	173
PagI	TCATGA	2 cut(s)	1003, 1036
PciSI	GCTCTTC	2 cut(s)	185, 694
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	305, 620, 719, 908
PkrI	GCNGC	3 cut(s)	149, 732, 813
PleI	GAGTC	2 cut(s)	149, 824
PpsI	GAGTC	2 cut(s)	149, 824
Psp6I	CCWGG	4 cut(s)	219, 244, 914, 971
PspGI	CCWGG	4 cut(s)	219, 244, 914, 971
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	2 cut(s)	217, 890
RsaI	GTAC	3 cut(s)	92, 314, 632
RsaNI	GTAC	3 cut(s)	91, 313, 631
RseI	CAYNNNNRTG	3 cut(s)	52, 543, 714
SapI	GCTCTTC	2 cut(s)	185, 694
SatI	GCNGC	3 cut(s)	148, 731, 812
Sau3AI	GATC	4 cut(s)	121, 547, 703, 956
Sau96I	GGNCC	2 cut(s)	217, 890
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	149, 824
ScrFI	CCNGG	4 cut(s)	221, 246, 916, 973
SduI	GDGCHC	2 cut(s)	72, 779
SfaNI	GCATC	1 cut(s)	658
SfuI	TTCGAA	1 cut(s)	173
SmiMI	CAYNNNNRTG	3 cut(s)	52, 543, 714
SmlI	CTYRAG	2 cut(s)	65, 418
SmoI	CTYRAG	2 cut(s)	65, 418
Sse9I	AATT	5 cut(s)	111, 397, 460, 724, 1021
StyD4I	CCNGG	4 cut(s)	219, 244, 914, 971
TaaI	ACNGT	6 cut(s)	206, 317, 347, 498, 668, 953
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	1 cut(s)	173
TasI	AATT	5 cut(s)	111, 397, 460, 724, 1021
TatI	WGTACW	2 cut(s)	90, 312
TfiI	GAWTC	4 cut(s)	305, 620, 719, 908
TscAI	CASTG	4 cut(s)	501, 673, 832, 958
TseFI	GTSAC	2 cut(s)	498, 827
TseI	GCWGC	3 cut(s)	147, 730, 811
Tsp45I	GTSAC	2 cut(s)	498, 827
TspDTI	ATGAA	5 cut(s)	522, 684, 732, 900, 900
TspRI	CASTG	4 cut(s)	501, 673, 832, 958
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.