Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0007690

Physical Location & Seq

Genomic Coordinates Forward (+)

177200 .. 178581

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgaggtttccttttactccatctcaatggcaagagcttgagcaccaagctctgatttacaagtacatggtttctggcataccaattcctcctgatctcctcttctccatcaaaagaagctgcttggactctccgcctctctcttcaaagctcttctctcctcacattgggtggaactgttttcagatgggcctggggaggaagatagacccagaaccaggaaggtgcagaagaacagatgggaagaaatggaggtgttcaaaagaggcatttgctgattctaagtactgtgagaggcacatgcatagaggcaaaaaccgttcaagaaagcctgtggaagtcttcaaagcaacaccaccaacatcagcaaattcacactctaactcaaactcaagcacatcaccaatcaccaagattttcaactcaccttccaattcactaagcacacccttccattcactatcttcactctcacccaatgaaagctacaatagtagtagttctgctcatcttgatgatcatcatttcctttattcaaggccaaacatggggttttcacagcaagaaagaggcacctccttgtttttggaatctgcttcgtacaataataatcccctgcatcccaacttagaatacagatcaaacaggtttggttatggggtgaaagaagacgtggatgagcatgcattcttctcagagccttcagggagtgttagaggcttctctggctcttcttcatctttggatcatcatcaaaatgaatccaattggcagctcacaatgagttgttccaactcctcttcaaaacagaggacgtgctctgctttacaaacagagcaataccctcatttgcagcttcagaacttcagtgactccaaaatggagagaagagaagaaacccagagaaccatacatcacttctttgatgaagggcctcccaaagagagagattcatcctggcttgatttggatggtaataataaatcttcaaacagtggatcagtttccaccaccaggctctcaatctccataccaaactctgctcatgacttccccatcttcaattcaagaaatcatcaaggtaattcttttttacctttagggttaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

370

Amino Acids

41.86

Weight (kDa)

8.61

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06200 AT2G06200 AT2G06200
fragaria_vesca	FvH4_1g08440 FvH4_1g08440
malus_domestica	MD00G1142400.v1.1 MD02G1088700.v1.1 MD02G1088800.v1.1 MD15G1216000.v1.1
prunus_persica	Prupe.7G201000_v2.0.a1
pyrus_communis	pycom02g07120 pycom15g19160
rosa_chinensis	RchiOBHm_Chr2g0094541
rosa_laevigata	RLG00000016500
rosa_multiflora	Rmu_sc0004359.1_g000041
rosa_roxburghii	Rroxscaffold_2G00147080
rosa_rugosa	Rorug02G0044600 Rorug02G0044700 Rorug02G0044800 Rorug02G0044800
rosa_samantha	Rh2AG092900 Rh2BG093100 Rh2CG095600 Rh2DG092000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	753, 1006
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	3 cut(s)	687, 842, 850
AfaI	GTAC	3 cut(s)	65, 287, 602
AfiI	CCNNNNNNNGG	4 cut(s)	167, 218, 548, 1014
AjiI	CACGTC	2 cut(s)	673, 816
AjnI	CCWGG	4 cut(s)	192, 217, 956, 1013
AluBI	AGCT	7 cut(s)	37, 50, 120, 151, 486, 775, 856
AluI	AGCT	7 cut(s)	37, 50, 120, 151, 486, 775, 856
Alw21I	GWGCWC	2 cut(s)	45, 821
AlwI	GGATC	2 cut(s)	753, 1006
AoxI	GGCC	3 cut(s)	190, 539, 932
ApeKI	GCWGC	3 cut(s)	120, 772, 853
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	190, 932
AsuHPI	GGTGA	5 cut(s)	393, 400, 417, 465, 673
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	334, 675
Bbv12I	GWGCWC	2 cut(s)	45, 821
BbvI	GCAGC	3 cut(s)	107, 784, 865
BccI	CCATC	6 cut(s)	28, 116, 181, 233, 965, 1064
BciT130I	CCWGG	4 cut(s)	194, 219, 958, 1015
BclI	TGATCA	1 cut(s)	517
BisI	GCNGC	3 cut(s)	121, 773, 854
BlsI	GCNGC	3 cut(s)	122, 774, 855
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	4 cut(s)	194, 219, 958, 1015
BmgBI	CACGTC	2 cut(s)	673, 816
BmgT120I	GGNCC	2 cut(s)	190, 932
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	4 cut(s)	194, 219, 958, 1015
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	2 cut(s)	334, 675
BpuEI	CTTGAG	2 cut(s)	59, 376
BsaBI	GATNNNNATC	2 cut(s)	519, 750
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 218, 548, 1014
Bse8I	GATNNNNATC	2 cut(s)	519, 750
BseBI	CCWGG	4 cut(s)	194, 219, 958, 1015
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	4 cut(s)	619, 682, 953, 976
BseJI	GATNNNNATC	2 cut(s)	519, 750
BseLI	CCNNNNNNNGG	4 cut(s)	167, 218, 548, 1014
BseMII	CTCAG	1 cut(s)	708
BseRI	GAGGAG	3 cut(s)	89, 150, 787
BseXI	GCAGC	3 cut(s)	107, 784, 865
BsgI	GTGCAG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	192, 541, 934
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	45, 821
BslI	CCNNNNNNNGG	4 cut(s)	167, 218, 548, 1014
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	3 cut(s)	192, 541, 934
Bsp1286I	GDGCHC	2 cut(s)	45, 821
Bsp143I	GATC	5 cut(s)	94, 517, 638, 745, 998
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	192, 541, 934
BspCNI	CTCAG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	753, 1006
BspQI	GCTCTTC	2 cut(s)	158, 736
BspT107I	GGYRCC	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	5 cut(s)	94, 517, 638, 745, 998
Bst2UI	CCWGG	4 cut(s)	194, 219, 958, 1015
Bst4CI	ACNGT	4 cut(s)	179, 290, 320, 995
Bst6I	CTCTTC	6 cut(s)	107, 148, 158, 736, 805, 883
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	4 cut(s)	282, 440, 628, 694
BstF5I	GGATG	4 cut(s)	619, 682, 953, 976
BstKTI	GATC	5 cut(s)	97, 520, 641, 748, 1001
BstMBI	GATC	5 cut(s)	94, 517, 638, 745, 998
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstNI	CCWGG	4 cut(s)	194, 219, 958, 1015
BstNSI	RCATGY	2 cut(s)	304, 686
BstSCI	CCNGG	4 cut(s)	192, 217, 956, 1013
BstV1I	GCAGC	3 cut(s)	107, 784, 865
BstV2I	GAAGAC	2 cut(s)	334, 675
BstXI	CCANNNNNNTGG	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	192, 541, 934
BtrI	CACGTC	2 cut(s)	673, 816
BtsCI	GGATG	4 cut(s)	619, 682, 953, 976
BtsIMutI	CAGTG	2 cut(s)	874, 1000
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	1 cut(s)	1045
Cfr13I	GGNCC	2 cut(s)	190, 932
Csp6I	GTAC	3 cut(s)	64, 286, 601
CviAII	CATG	5 cut(s)	67, 301, 547, 683, 1046
CviQI	GTAC	3 cut(s)	64, 286, 601
DdeI	CTNAG	4 cut(s)	282, 440, 628, 694
DpnI	GATC	5 cut(s)	96, 519, 640, 747, 1000
DpnII	GATC	5 cut(s)	94, 517, 638, 745, 998
Eam1104I	CTCTTC	6 cut(s)	107, 148, 158, 736, 805, 883
EarI	CTCTTC	6 cut(s)	107, 148, 158, 736, 805, 883
EciI	GGCGGA	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	687, 842, 850
EcoO109I	RGGNCCY	1 cut(s)	932
EcoRII	CCWGG	4 cut(s)	192, 217, 956, 1013
EcoT22I	ATGCAT	2 cut(s)	306, 688
FaeI	CATG	5 cut(s)	70, 304, 550, 686, 1049
FatI	CATG	5 cut(s)	66, 300, 546, 682, 1045
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	121, 773, 854
FokI	GGATG	4 cut(s)	606, 689, 940, 983
Fsp4HI	GCNGC	3 cut(s)	121, 773, 854
GluI	GCNGC	3 cut(s)	121, 773, 854
HaeIII	GGCC	3 cut(s)	192, 541, 934
Hin1II	CATG	5 cut(s)	70, 304, 550, 686, 1049
HinfI	GANTC	6 cut(s)	128, 278, 590, 761, 872, 950
HphI	GGTGA	5 cut(s)	393, 400, 417, 465, 673
Hpy188I	TCNGA	4 cut(s)	54, 186, 697, 861
Hpy188III	TCNNGA	5 cut(s)	92, 324, 512, 1046, 1068
HpyAV	CCTTC	5 cut(s)	216, 438, 460, 711, 923
HpyCH4III	ACNGT	4 cut(s)	179, 290, 320, 995
HpyCH4IV	ACGT	2 cut(s)	672, 815
HpyCH4V	TGCA	5 cut(s)	228, 304, 619, 686, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	4 cut(s)	282, 440, 628, 694
HpySE526I	ACGT	2 cut(s)	672, 815
Hsp92II	CATG	5 cut(s)	70, 304, 550, 686, 1049
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	94, 517, 638, 745, 998
LguI	GCTCTTC	2 cut(s)	158, 736
Lsp1109I	GCAGC	3 cut(s)	107, 784, 865
LweI	GCATC	1 cut(s)	628
MaeII	ACGT	2 cut(s)	672, 815
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	5 cut(s)	96, 519, 640, 747, 1000
MboI	GATC	5 cut(s)	94, 517, 638, 745, 998
MfeI	CAATTG	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	45, 821
MluCI	AATT	6 cut(s)	84, 370, 433, 766, 1063, 1084
MlyI	GAGTC	2 cut(s)	122, 866
MmeI	TCCRAC	1 cut(s)	816
Mph1103I	ATGCAT	2 cut(s)	306, 688
MseI	TTAA	1 cut(s)	1106
MslI	CAYNNNNRTG	3 cut(s)	25, 513, 756
MspR9I	CCNGG	4 cut(s)	194, 219, 958, 1015
MunI	CAATTG	1 cut(s)	766
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	4 cut(s)	194, 219, 958, 1015
MwoI	GCNNNNNNNGC	1 cut(s)	726
NdeII	GATC	5 cut(s)	94, 517, 638, 745, 998
NlaIII	CATG	5 cut(s)	70, 304, 550, 686, 1049
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	869
NsiI	ATGCAT	2 cut(s)	306, 688
NspI	RCATGY	2 cut(s)	304, 686
PaeI	GCATGC	1 cut(s)	686
PagI	TCATGA	1 cut(s)	1045
PciSI	GCTCTTC	2 cut(s)	158, 736
PctI	GAATGC	1 cut(s)	686
PfeI	GAWTC	4 cut(s)	278, 590, 761, 950
PkrI	GCNGC	3 cut(s)	122, 774, 855
PleI	GAGTC	2 cut(s)	122, 866
PpsI	GAGTC	2 cut(s)	122, 866
Psp6I	CCWGG	4 cut(s)	192, 217, 956, 1013
PspGI	CCWGG	4 cut(s)	192, 217, 956, 1013
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	2 cut(s)	190, 932
RsaI	GTAC	3 cut(s)	65, 287, 602
RsaNI	GTAC	3 cut(s)	64, 286, 601
RseI	CAYNNNNRTG	3 cut(s)	25, 513, 756
SapI	GCTCTTC	2 cut(s)	158, 736
SaqAI	TTAA	1 cut(s)	1106
SatI	GCNGC	3 cut(s)	121, 773, 854
Sau3AI	GATC	5 cut(s)	94, 517, 638, 745, 998
Sau96I	GGNCC	2 cut(s)	190, 932
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	2 cut(s)	122, 866
ScrFI	CCNGG	4 cut(s)	194, 219, 958, 1015
SduI	GDGCHC	2 cut(s)	45, 821
SfaNI	GCATC	1 cut(s)	628
SmiMI	CAYNNNNRTG	3 cut(s)	25, 513, 756
SmlI	CTYRAG	2 cut(s)	38, 391
SmoI	CTYRAG	2 cut(s)	38, 391
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	84, 370, 433, 766, 1063, 1084
SsiI	CCGC	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	192, 217, 956, 1013
TaaI	ACNGT	4 cut(s)	179, 290, 320, 995
TaiI	ACGT	2 cut(s)	675, 818
TasI	AATT	6 cut(s)	84, 370, 433, 766, 1063, 1084
TatI	WGTACW	2 cut(s)	63, 285
TfiI	GAWTC	4 cut(s)	278, 590, 761, 950
Tru1I	TTAA	1 cut(s)	1106
Tru9I	TTAA	1 cut(s)	1106
TscAI	CASTG	2 cut(s)	874, 1000
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	3 cut(s)	120, 772, 853
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	5 cut(s)	495, 726, 774, 942, 942
TspRI	CASTG	2 cut(s)	874, 1000
XapI	RAATTY	1 cut(s)	370
XceI	RCATGY	2 cut(s)	304, 686
ZrmI	AGTACT	1 cut(s)	287
Zsp2I	ATGCAT	2 cut(s)	306, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.