Rh2BG093100

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007690
Physical Location & Seq
Reverse (-)
7272697 .. 7275496
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG093100.1

Sequence Viewer

Length: 912 bp
ATGGGCCTGGGGAGGAAGATAGACCCAGAACCAGGAAGGTGCAGAAGAACAGATGGGAAGAAATGGAGGTGTTCAAAAGAGGCATTTGCTGATTCTAAGTACTGTGAGAGGCACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTCAAAGCAACACCACCAACATCAGCAAATTCAAACTCTAACTCAAACTCAAACTCAAGCACTTCACCAATCACCAAGATTTTCAACTCACCTTCCAATTCACTAAGCACACCCTTCCATTCACTATCTTCACTCTCACCCAATGAAAGTAGCTACAATAGTAGTAGTTCTGCTCATCTTGATGATCATCATTTCCTTTATTCAAGGCCAAACATGGGGTTTTCACAGCAAGAAAGAGGCACCTCCTTGTTTTTGGAATCTGCTTCGTACAATAATAATCCCCTGCATCCCAACTTAGAATACAGATCAAACAGGTTTGGTTATGGGGTGAAAGAAGACGTGGATGAGCATGCATTCTTCTCAGAGCCTTCAGGGAGTGTTAGAGGCTTCTCTGGCTCTTCTTCATCTTTGGATCATCATCAAAATGAATCCAATTGGCAGCTCACAATGAGTTGTTCCAACTCCTCTTCAAAACAGAGGACGTGCTCTGCTTTACAAACAGAGCAATACCCTCATTTGCAGCTTCAGAACTTCAGTGACTCCAAAATGGAGAGAAGAGAAGAAACCCAGAGAACCATACATCACTTCTTTGATGAAGGGCCTCCCAAAGAGAGAGATTCATCCTGGCTTGATTTGGATGGTAATAATAAATCTTCAAACAGTGGATCAGTTTCCACCACCAGGCTCTCAATCTCCATACCAAACTCTGCTCATGACTTCCCCATCTTCAATTCAAGAAATCATCATGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

303

Amino Acids

34.16

Weight (kDa)

7.78

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 9 - 51 1.6e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AclWI GGATC 2 cut(s) 576, 829
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 3 cut(s) 510, 665, 673
AfaI GTAC 2 cut(s) 101, 425
AfiI CCNNNNNNNGG 3 cut(s) 32, 371, 837
AjiI CACGTC 2 cut(s) 496, 639
AjnI CCWGG 4 cut(s) 6, 31, 779, 836
AluBI AGCT 3 cut(s) 309, 598, 679
AluI AGCT 3 cut(s) 309, 598, 679
Alw21I GWGCWC 1 cut(s) 644
AlwI GGATC 2 cut(s) 576, 829
AoxI GGCC 3 cut(s) 4, 362, 755
ApeKI GCWGC 2 cut(s) 595, 676
ApoI RAATTY 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 4, 755
AsuHPI GGTGA 5 cut(s) 213, 220, 237, 285, 496
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 2 cut(s) 607, 688
BccI CCATC 3 cut(s) 47, 788, 887
BciT130I CCWGG 4 cut(s) 8, 33, 781, 838
BclI TGATCA 1 cut(s) 340
BisI GCNGC 2 cut(s) 596, 677
BlsI GCNGC 2 cut(s) 597, 678
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 4 cut(s) 8, 33, 781, 838
BmgBI CACGTC 2 cut(s) 496, 639
BmgT120I GGNCC 2 cut(s) 4, 755
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 4 cut(s) 8, 33, 781, 838
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 342, 573
BsaJI CCNNGG 1 cut(s) 7
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 371, 837
Bse8I GATNNNNATC 2 cut(s) 342, 573
BseBI CCWGG 4 cut(s) 8, 33, 781, 838
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 4 cut(s) 442, 505, 776, 799
BseJI GATNNNNATC 2 cut(s) 342, 573
BseLI CCNNNNNNNGG 3 cut(s) 32, 371, 837
BseMII CTCAG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 610
BseXI GCAGC 2 cut(s) 607, 688
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 3 cut(s) 6, 364, 757
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 644
BslI CCNNNNNNNGG 3 cut(s) 32, 371, 837
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 3 cut(s) 6, 364, 757
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 4 cut(s) 340, 461, 568, 821
BspANI GGCC 3 cut(s) 6, 364, 757
BspCNI CTCAG 1 cut(s) 530
BspHI TCATGA 2 cut(s) 868, 901
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 2 cut(s) 576, 829
BspQI GCTCTTC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 4 cut(s) 340, 461, 568, 821
Bst2UI CCWGG 4 cut(s) 8, 33, 781, 838
Bst4CI ACNGT 3 cut(s) 104, 134, 818
Bst6I CTCTTC 3 cut(s) 559, 628, 706
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 4 cut(s) 96, 260, 451, 517
BstF5I GGATG 4 cut(s) 442, 505, 776, 799
BstKTI GATC 4 cut(s) 343, 464, 571, 824
BstMBI GATC 4 cut(s) 340, 461, 568, 821
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstNI CCWGG 4 cut(s) 8, 33, 781, 838
BstNSI RCATGY 2 cut(s) 118, 509
BstSCI CCNGG 4 cut(s) 6, 31, 779, 836
BstV1I GCAGC 2 cut(s) 607, 688
BstV2I GAAGAC 1 cut(s) 498
BsuRI GGCC 3 cut(s) 6, 364, 757
BtrI CACGTC 2 cut(s) 496, 639
BtsCI GGATG 4 cut(s) 442, 505, 776, 799
BtsIMutI CAGTG 2 cut(s) 697, 823
Cac8I GCNNGC 1 cut(s) 507
CciI TCATGA 2 cut(s) 868, 901
Cfr13I GGNCC 2 cut(s) 4, 755
Csp6I GTAC 2 cut(s) 100, 424
CviAII CATG 5 cut(s) 115, 370, 506, 869, 902
CviQI GTAC 2 cut(s) 100, 424
DdeI CTNAG 4 cut(s) 96, 260, 451, 517
DpnI GATC 4 cut(s) 342, 463, 570, 823
DpnII GATC 4 cut(s) 340, 461, 568, 821
Eam1104I CTCTTC 3 cut(s) 559, 628, 706
EarI CTCTTC 3 cut(s) 559, 628, 706
Eco57I CTGAAG 3 cut(s) 510, 665, 673
EcoO109I RGGNCCY 1 cut(s) 755
EcoRII CCWGG 4 cut(s) 6, 31, 779, 836
EcoT22I ATGCAT 2 cut(s) 120, 511
FaeI CATG 5 cut(s) 118, 373, 509, 872, 905
FaiI YATR 9 cut(s) 116, 120, 371, 480, 507, 734, 854, 870, 903
FatI CATG 5 cut(s) 114, 369, 505, 868, 901
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 596, 677
FokI GGATG 4 cut(s) 429, 512, 763, 806
Fsp4HI GCNGC 2 cut(s) 596, 677
GluI GCNGC 2 cut(s) 596, 677
HaeIII GGCC 3 cut(s) 6, 364, 757
Hin1II CATG 5 cut(s) 118, 373, 509, 872, 905
HinfI GANTC 5 cut(s) 92, 413, 584, 695, 773
HphI GGTGA 5 cut(s) 213, 220, 237, 285, 496
Hpy188I TCNGA 2 cut(s) 520, 684
Hpy188III TCNNGA 5 cut(s) 138, 335, 869, 891, 902
HpyAV CCTTC 5 cut(s) 30, 258, 280, 534, 746
HpyCH4III ACNGT 3 cut(s) 104, 134, 818
HpyCH4IV ACGT 2 cut(s) 495, 638
HpyCH4V TGCA 5 cut(s) 42, 118, 442, 509, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 4 cut(s) 96, 260, 451, 517
HpySE526I ACGT 2 cut(s) 495, 638
Hsp92II CATG 5 cut(s) 118, 373, 509, 872, 905
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 4 cut(s) 340, 461, 568, 821
LguI GCTCTTC 1 cut(s) 559
Lsp1109I GCAGC 2 cut(s) 607, 688
LweI GCATC 1 cut(s) 451
MaeII ACGT 2 cut(s) 495, 638
MaeIII GTNAC 1 cut(s) 692
MalI GATC 4 cut(s) 342, 463, 570, 823
MboI GATC 4 cut(s) 340, 461, 568, 821
MfeI CAATTG 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 4 cut(s) 184, 253, 589, 886
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 1 cut(s) 639
Mph1103I ATGCAT 2 cut(s) 120, 511
MslI CAYNNNNRTG 2 cut(s) 336, 579
MspR9I CCNGG 4 cut(s) 8, 33, 781, 838
MunI CAATTG 1 cut(s) 589
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 4 cut(s) 8, 33, 781, 838
MwoI GCNNNNNNNGC 1 cut(s) 549
NdeII GATC 4 cut(s) 340, 461, 568, 821
NlaIII CATG 5 cut(s) 118, 373, 509, 872, 905
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 2 cut(s) 120, 511
NspI RCATGY 2 cut(s) 118, 509
PaeI GCATGC 1 cut(s) 509
PagI TCATGA 2 cut(s) 868, 901
PciSI GCTCTTC 1 cut(s) 559
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 92, 413, 584, 773
PkrI GCNGC 2 cut(s) 597, 678
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp6I CCWGG 4 cut(s) 6, 31, 779, 836
PspGI CCWGG 4 cut(s) 6, 31, 779, 836
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 2 cut(s) 4, 755
RsaI GTAC 2 cut(s) 101, 425
RsaNI GTAC 2 cut(s) 100, 424
RseI CAYNNNNRTG 2 cut(s) 336, 579
SapI GCTCTTC 1 cut(s) 559
SatI GCNGC 2 cut(s) 596, 677
Sau3AI GATC 4 cut(s) 340, 461, 568, 821
Sau96I GGNCC 2 cut(s) 4, 755
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 4 cut(s) 8, 33, 781, 838
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 336, 579
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 509
Sse9I AATT 4 cut(s) 184, 253, 589, 886
StyD4I CCNGG 4 cut(s) 6, 31, 779, 836
TaaI ACNGT 3 cut(s) 104, 134, 818
TaiI ACGT 2 cut(s) 498, 641
TasI AATT 4 cut(s) 184, 253, 589, 886
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 4 cut(s) 92, 413, 584, 773
TscAI CASTG 2 cut(s) 697, 823
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 2 cut(s) 595, 676
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 315, 549, 597, 765, 765
TspRI CASTG 2 cut(s) 697, 823
XapI RAATTY 1 cut(s) 184
XceI RCATGY 2 cut(s) 118, 509
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 2 cut(s) 120, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.