Rorug02G0044700

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007690
Physical Location & Seq
Reverse (-)
3529746 .. 3531333
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0044700.1

Sequence Viewer

Length: 1407 bp
ATGGCTCCTCCATGGGTTCAAGAGCTCCATTTTCCTCACCTGCACATCCCCATCACTATCGACCACATGACTCCAGTCATACCCTCAGGGCCTATTCCGGTAGCTCCTGGCCAAACTCTATACCTTTCGAACCTAGATGACATGATCGGAGCTCGTGTTTTCACTCCGACAGTATATTTCTACTCGTCATATGACCGAAGACCTGTTATGAAAATACTACACGATGCTCTTGCAAGTGTGTTAGTCCCTTACTACCCTTTATCGGGTAGGCTAAGGGAGGCCAGAAATGGGAAACTAGAAGTGTTTTTTGGGCAAGAACAGGGAGCATTGTTGGTGGAGGCACACTCTGAAATGGCCTTGGCTGATCTAGGAGACCTCAAAGTACCAAACCCAGCATGGACACCACTGATCTTTAGGTTCCCAAACGAAGAACCATACAAAGTCCTTGACATGCCATTGGTGATAGCTCAGGTCACTAATTTCAGCTGTGGTGGGTTTAGCATTGGCTTGAGAATCTGCCATTGCATCTGTGACGGTCTTGGTGCTATGCAATTCCTCACCTCATGGGCTGCAACAGCAAGAGCAGGCACATTGATCGCTAACCCTGAGCCATGTTGGGACAGAGAGTTTTTCAGACCTCGCAACCCACCACTCGTGAAATTCCCACACATTGAATTCATGAGAGTAGAAGATGGCTCAAGCCTCACAATAAGTCTATGGCAAACCAAACCGGTTCAAAAGTGCTACCGGATAAGCCGCGAGTTCCAAACCTTGCTGAAAACTCTGGCTCAACCGAAAGATAACATGTCTAATGTTGCATGCAGCGCTTTTGATGCCATGGCAGCTCATGTATGGAGATCATGGGTGAAAGCACTTGATGTAAAACCATTGAACTATGGGCTTAGGCTAACCTTCTCTGCCAATGCCCGCAATAAACTCAAAAACCAGCCACTAAAAGACGGGTTTTATGGCAATGCAGTGTGTCTAGCTTGTGTCACAAGCACTGTGACAAAGCTTGTTCATGGGAGGCTCTCGGAGATTACTCACTTGGTTCGTGAAGCCCGGCTTGGTATCTCCGAAGAGTACTTAAGATCAACGGTGGACTATGTTGAAGTAGACAGACCACGAAAACTGGAATTTGGAGGCAAATTGACAATAACTCAGTGGACTAGATTTCCAATGTATGATTCTGCTGATTTTGGATGGGGAAGGCCTATATATGCTGGTCCGATCGATCTCACTCCAACACCACAAGTCTGTGTTTTTCTGCCGGAAGCTGAGGCTGATCATCCTAGTGGGACAATGCTCGTTTGCATTTGCTTGCCTGAATCTGCTACTCATAGCTTCACAGAACTTCTGTCTCTTACACATTCCGGTGATCTAAATCATGTCAATACTACTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QLQ WRC

Protein Analysis

468

Amino Acids

52.39

Weight (kDa)

6.73

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 451 5.4e-73 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 1116
AccII CGCG 1 cut(s) 759
AciI CCGC 2 cut(s) 757, 928
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 659, 674, 1136
AfaI GTAC 2 cut(s) 384, 1085
AfeI AGCGCT 1 cut(s) 826
AfiI CCNNNNNNNGG 3 cut(s) 262, 263, 288
AflII CTTAAG 1 cut(s) 1087
AflIII ACRYGT 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 5 cut(s) 20, 674, 737, 892, 1112
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 6 cut(s) 291, 323, 1050, 1082, 1171, 1203
Alw21I GWGCWC 2 cut(s) 27, 154
Alw26I GTCTC 2 cut(s) 366, 1365
Aor51HI AGCGCT 1 cut(s) 826
AoxI GGCC 5 cut(s) 89, 109, 279, 354, 1211
ApeKI GCWGC 3 cut(s) 569, 822, 842
ApoI RAATTY 3 cut(s) 659, 674, 1136
AsiGI ACCGGT 1 cut(s) 730
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 2 cut(s) 89, 1226
AsuC2I CCSGG 1 cut(s) 1063
AsuHPI GGTGA 5 cut(s) 29, 472, 550, 877, 1388
AsuII TTCGAA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 1226
AxyI CCTNAGG 1 cut(s) 85
BalI TGGCCA 1 cut(s) 111
BanII GRGCYC 2 cut(s) 27, 154
BauI CACGAG 2 cut(s) 153, 653
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 27, 154
BbvCI CCTCAGC 1 cut(s) 1278
BbvI GCAGC 3 cut(s) 556, 834, 854
BccI CCATC 3 cut(s) 59, 686, 1197
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 577, 611
BciT130I CCWGG 1 cut(s) 108
BclI TGATCA 1 cut(s) 1285
BcnI CCSGG 1 cut(s) 1063
BcoDI GTCTC 2 cut(s) 366, 1365
BfaI CTAG 6 cut(s) 134, 296, 368, 986, 1170, 1293
BfoI RGCGCY 1 cut(s) 828
BfrI CTTAAG 1 cut(s) 1087
BfuAI ACCTGC 1 cut(s) 48
BisI GCNGC 4 cut(s) 570, 757, 823, 843
BlsI GCNGC 4 cut(s) 571, 758, 824, 844
BmcAI AGTACT 1 cut(s) 1085
Bme1390I CCNGG 2 cut(s) 108, 1063
Bme18I GGWCC 1 cut(s) 1226
BmgT120I GGNCC 2 cut(s) 89, 1226
BmiI GGNNCC 2 cut(s) 6, 419
BmrFI CCNGG 2 cut(s) 108, 1063
BmsI GCATC 3 cut(s) 214, 534, 823
BoxI GACNNNNGTC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 5 cut(s) 272, 468, 606, 902, 1278
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 529, 682
BpuMI CCSGG 1 cut(s) 1063
Bsa29I ATCGAT 1 cut(s) 1233
BsaAI YACGTR 1 cut(s) 1404
BsaBI GATNNNNATC 1 cut(s) 1383
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 11, 357, 837
BsaWI WCCGGW 4 cut(s) 97, 730, 747, 1373
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 263, 288
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 74, 1137
Bse21I CCTNAGG 1 cut(s) 85
Bse3DI GCAATG 2 cut(s) 520, 979
Bse8I GATNNNNATC 1 cut(s) 1383
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 1233
BseDI CCNNGG 3 cut(s) 11, 357, 837
BseGI GGATG 3 cut(s) 45, 1208, 1288
BseJI GATNNNNATC 1 cut(s) 1383
BseLI CCNNNNNNNGG 3 cut(s) 262, 263, 288
BseMI GCAATG 2 cut(s) 520, 979
BseMII CTCAG 5 cut(s) 99, 482, 597, 1175, 1269
BseNI ACTGG 2 cut(s) 74, 1137
BseXI GCAGC 3 cut(s) 556, 834, 854
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 759
Bsh1285I CGRYCG 1 cut(s) 1233
BshFI GGCC 5 cut(s) 91, 111, 281, 356, 1213
BshTI ACCGGT 1 cut(s) 730
BshVI ATCGAT 1 cut(s) 1233
BsiEI CGRYCG 1 cut(s) 1233
BsiHKAI GWGCWC 2 cut(s) 27, 154
BsiSI CCGG 6 cut(s) 98, 731, 748, 1063, 1271, 1374
BslFI GGGAC 3 cut(s) 230, 632, 1312
BslI CCNNNNNNNGG 3 cut(s) 262, 263, 288
BsmAI GTCTC 2 cut(s) 366, 1365
BsmFI GGGAC 3 cut(s) 230, 632, 1312
BsnI GGCC 5 cut(s) 91, 111, 281, 356, 1213
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 27, 154
Bsp19I CCATGG 2 cut(s) 11, 837
BspACI CCGC 2 cut(s) 757, 928
BspANI GGCC 5 cut(s) 91, 111, 281, 356, 1213
BspCNI CTCAG 5 cut(s) 98, 481, 598, 1174, 1270
BspDI ATCGAT 1 cut(s) 1233
BspFNI CGCG 1 cut(s) 759
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 2 cut(s) 6, 419
BspMI ACCTGC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 1087
BspTNI GGTCTC 1 cut(s) 366
BsrDI GCAATG 2 cut(s) 520, 979
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 2 cut(s) 74, 1137
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 11, 357, 837
BssSI CACGAG 2 cut(s) 153, 653
BssT1I CCWWGG 3 cut(s) 11, 357, 837
Bst2BI CACGAG 2 cut(s) 153, 653
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 4 cut(s) 172, 536, 1006, 1099
Bst6I CTCTTC 1 cut(s) 1074
BstAFI CTTAAG 1 cut(s) 1087
BstBAI YACGTR 1 cut(s) 1404
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 586, 820, 928, 1322
BstDEI CTNAG 7 cut(s) 85, 272, 468, 606, 902, 1161, 1278
BstDSI CCRYGG 2 cut(s) 11, 837
BstF5I GGATG 3 cut(s) 45, 1208, 1288
BstFNI CGCG 1 cut(s) 759
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 1 cut(s) 827
BstMAI GTCTC 2 cut(s) 366, 1365
BstMCI CGRYCG 1 cut(s) 1233
BstMWI GCNNNNNNNGC 4 cut(s) 575, 824, 833, 842
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 3 cut(s) 454, 808, 822
BstPAI GACNNNNGTC 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 106, 1061
BstSNI TACGTA 1 cut(s) 1404
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 3 cut(s) 556, 834, 854
BstV2I GAAGAC 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 1233
Bsu36I CCTNAGG 1 cut(s) 85
BsuRI GGCC 5 cut(s) 91, 111, 281, 356, 1213
BsuTUI ATCGAT 1 cut(s) 1233
BtgI CCRYGG 2 cut(s) 11, 837
BtsCI GGATG 3 cut(s) 45, 1208, 1288
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 4 cut(s) 404, 984, 1002, 1169
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 4 cut(s) 586, 820, 928, 1322
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 89, 1226
ClaI ATCGAT 1 cut(s) 1233
Csp6I GTAC 2 cut(s) 383, 1084
CspAI ACCGGT 1 cut(s) 730
CviQI GTAC 2 cut(s) 383, 1084
DdeI CTNAG 7 cut(s) 85, 272, 468, 606, 902, 1161, 1278
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 1074
EarI CTCTTC 1 cut(s) 1074
Ecl136II GAGCTC 2 cut(s) 25, 152
Eco105I TACGTA 1 cut(s) 1404
Eco130I CCWWGG 3 cut(s) 11, 357, 837
Eco147I AGGCCT 1 cut(s) 1213
Eco24I GRGCYC 2 cut(s) 27, 154
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 1226
Eco47III AGCGCT 1 cut(s) 826
Eco53kI GAGCTC 2 cut(s) 25, 152
Eco81I CCTNAGG 1 cut(s) 85
EcoICRI GAGCTC 2 cut(s) 25, 152
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 11, 357, 837
EcoT38I GRGCYC 2 cut(s) 27, 154
ErhI CCWWGG 3 cut(s) 11, 357, 837
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 3 cut(s) 230, 632, 1312
FauI CCCGC 1 cut(s) 935
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 1116
Fnu4HI GCNGC 4 cut(s) 570, 757, 823, 843
FokI GGATG 3 cut(s) 32, 1215, 1275
FriOI GRGCYC 2 cut(s) 27, 154
Fsp4HI GCNGC 4 cut(s) 570, 757, 823, 843
FspBI CTAG 6 cut(s) 134, 296, 368, 986, 1170, 1293
GlaI GCGC 1 cut(s) 826
GluI GCNGC 4 cut(s) 570, 757, 823, 843
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 5 cut(s) 91, 111, 281, 356, 1213
HapII CCGG 6 cut(s) 98, 731, 748, 1063, 1271, 1374
HhaI GCGC 1 cut(s) 827
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 4 cut(s) 70, 513, 1187, 1328
HpaII CCGG 6 cut(s) 98, 731, 748, 1063, 1271, 1374
HphI GGTGA 5 cut(s) 29, 472, 550, 877, 1388
Hpy166II GTNNAC 3 cut(s) 1102, 1117, 1167
Hpy188I TCNGA 7 cut(s) 149, 168, 349, 635, 1036, 1078, 1230
Hpy188III TCNNGA 4 cut(s) 20, 655, 679, 1055
Hpy8I GTNNAC 3 cut(s) 1102, 1117, 1167
HpyAV CCTTC 2 cut(s) 922, 1203
HpyCH4III ACNGT 4 cut(s) 172, 536, 1006, 1099
HpyCH4IV ACGT 1 cut(s) 1403
HpyCH4V TGCA 9 cut(s) 43, 233, 525, 550, 572, 818, 822, 977, 1314
HpyF10VI GCNNNNNNNGC 4 cut(s) 575, 824, 833, 842
HpyF3I CTNAG 7 cut(s) 85, 272, 468, 606, 902, 1161, 1278
HpySE526I ACGT 1 cut(s) 1403
HspAI GCGC 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 1285
LmnI GCTCC 5 cut(s) 10, 30, 109, 149, 323
Lsp1109I GCAGC 3 cut(s) 556, 834, 854
LweI GCATC 3 cut(s) 214, 534, 823
MaeI CTAG 6 cut(s) 134, 296, 368, 986, 1170, 1293
MaeII ACGT 1 cut(s) 1403
MaeIII GTNAC 4 cut(s) 472, 530, 994, 1006
MboII GAAGA 4 cut(s) 210, 440, 701, 1091
MhlI GDGCHC 2 cut(s) 27, 154
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 6 cut(s) 478, 551, 659, 674, 1136, 1148
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 2 cut(s) 191, 1268
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 1 cut(s) 1088
MslI CAYNNNNRTG 2 cut(s) 1293, 1374
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 1087
MspI CCGG 6 cut(s) 98, 731, 748, 1063, 1271, 1374
MspR9I CCNGG 2 cut(s) 108, 1063
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 759
MwoI GCNNNNNNNGC 4 cut(s) 575, 824, 833, 842
NciI CCSGG 1 cut(s) 1063
NcoI CCATGG 2 cut(s) 11, 837
NdeI CATATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 6, 419
NmuCI GTSAC 4 cut(s) 472, 530, 994, 1006
NspI RCATGY 3 cut(s) 454, 808, 822
NspV TTCGAA 1 cut(s) 128
PaeI GCATGC 1 cut(s) 822
PagI TCATGA 1 cut(s) 678
PaqCI CACCTGC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 1213
PciI ACATGT 1 cut(s) 804
PfeI GAWTC 3 cut(s) 513, 1187, 1328
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 4 cut(s) 571, 758, 824, 844
Ple19I CGATCG 1 cut(s) 1233
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 1404
PscI ACATGT 1 cut(s) 804
PshAI GACNNNNGTC 1 cut(s) 74
Psp124BI GAGCTC 2 cut(s) 27, 154
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 6, 419
PspPI GGNCC 2 cut(s) 89, 1226
PvuI CGATCG 1 cut(s) 1233
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 2 cut(s) 384, 1085
RsaNI GTAC 2 cut(s) 383, 1084
RseI CAYNNNNRTG 2 cut(s) 1293, 1374
SacI GAGCTC 2 cut(s) 27, 154
SaqAI TTAA 1 cut(s) 1088
SatI GCNGC 4 cut(s) 570, 757, 823, 843
Sau96I GGNCC 2 cut(s) 89, 1226
ScaI AGTACT 1 cut(s) 1085
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 108, 1063
SduI GDGCHC 2 cut(s) 27, 154
SfaNI GCATC 3 cut(s) 214, 534, 823
SfuI TTCGAA 1 cut(s) 128
SinI GGWCC 1 cut(s) 1226
SmiMI CAYNNNNRTG 2 cut(s) 1293, 1374
SmlI CTYRAG 3 cut(s) 508, 697, 1087
SmoI CTYRAG 3 cut(s) 508, 697, 1087
SnaBI TACGTA 1 cut(s) 1404
SphI GCATGC 1 cut(s) 822
Sse9I AATT 6 cut(s) 478, 551, 659, 674, 1136, 1148
SseBI AGGCCT 1 cut(s) 1213
SsiI CCGC 2 cut(s) 757, 928
SspMI CTAG 6 cut(s) 134, 296, 368, 986, 1170, 1293
SstI GAGCTC 2 cut(s) 27, 154
StuI AGGCCT 1 cut(s) 1213
StyD4I CCNGG 2 cut(s) 106, 1061
StyI CCWWGG 3 cut(s) 11, 357, 837
TaaI ACNGT 4 cut(s) 172, 536, 1006, 1099
TaiI ACGT 1 cut(s) 1406
TaqI TCGA 3 cut(s) 60, 128, 1233
TaqII GACCGA 1 cut(s) 210
TasI AATT 6 cut(s) 478, 551, 659, 674, 1136, 1148
TatI WGTACW 1 cut(s) 1083
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 3 cut(s) 513, 1187, 1328
Tru1I TTAA 1 cut(s) 1088
Tru9I TTAA 1 cut(s) 1088
TscAI CASTG 4 cut(s) 411, 984, 1009, 1169
TseFI GTSAC 4 cut(s) 472, 530, 994, 1006
TseI GCWGC 3 cut(s) 569, 822, 842
Tsp45I GTSAC 4 cut(s) 472, 530, 994, 1006
TspDTI ATGAA 3 cut(s) 224, 667, 1010
TspRI CASTG 4 cut(s) 411, 984, 1009, 1169
Vha464I CTTAAG 1 cut(s) 1087
VpaK11BI GGWCC 1 cut(s) 1226
XapI RAATTY 3 cut(s) 659, 674, 1136
XceI RCATGY 3 cut(s) 454, 808, 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 6 cut(s) 134, 296, 368, 986, 1170, 1293
ZrmI AGTACT 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.